Rroxscaffold_6G00426760

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000189
Physical Location & Seq
Forward (+)
47442448 .. 47443771
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00426760.1

Sequence Viewer

Length: 678 bp
ATGAGATCCTATCCCACTGCCACCGCCTCCGCTGCCAAATCCAAGAAAGAGCTCTACATGTCTCTCGGCCACGGCCCCGTCCTCATCGACGATGGCACTATGCTTTTCTCTGGAAAATTAAAATGGACTGGAAAGAAATGTTACATGATAGCTGCAAAGCGCCTTCGGATTGCTTGGGGTGATACTCCTCGATATTGGCAATGGATTACTCTGCCTAGCACCAGGTTCGAGGAAGTAGCTGAGCTTCAGTGGGTTGGTTGGTTTGAAATTCGTGGGAGAATTGCTATACGCATGCTTACCCCATCAACTCTATATAAAGCTTATCTTGCGTACAAGTTTACTGGAAGCGCATGGGGATTTGACAACTATCCTGTGGTGGTGGCGGTTTCTGCAAGGGATTATGGCTTTGATTATGAAAGCCCTAGTTTGAGAGAAATTGTTGATGGAGGAGACCTTAAGCACACTTCCTTTCTGGTGAATCCCGAGAGAGGAATCAGTGATGATCAGCATTTTCCAAAGGAAACAGCAGATGGCTGGTTGGAGATGAAGCTGGGTGAATTTTTCTGTGGTGGAGGAGAAGATGGAGAGTTGGAGATGATTTGTTGTGAGATTGATATTAGTAGCAAGAGTGGCATCATTGTGCAAGGGATTGAGATCAGACCGTGCGATTGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

225

Amino Acids

25.47

Weight (kDa)

5.5

Isoelectric Point (pI)

33.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 45 - 221 3.9e-46 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 24, 30, 383
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 2 cut(s) 267, 557
AcuI CTGAAG 1 cut(s) 230
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 488
AflII CTTAAG 1 cut(s) 455
AflIII ACRYGT 1 cut(s) 57
AgsI TTSAA 1 cut(s) 266
AjnI CCWGG 1 cut(s) 221
AluBI AGCT 6 cut(s) 52, 152, 239, 244, 320, 550
AluI AGCT 6 cut(s) 52, 152, 239, 244, 320, 550
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 2 cut(s) 66, 444
Ama87I CYCGRG 1 cut(s) 482
AoxI GGCC 2 cut(s) 67, 73
ApeKI GCWGC 2 cut(s) 32, 152
ApoI RAATTY 2 cut(s) 267, 557
AspLEI GCGC 2 cut(s) 162, 350
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 3 cut(s) 191, 487, 566
AvaI CYCGRG 1 cut(s) 482
BanII GRGCYC 1 cut(s) 54
BarI GAAGNNNNNNTAC 2 cut(s) 228, 260
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 19, 139
BccI CCATC 5 cut(s) 86, 310, 437, 524, 575
BceAI ACGGC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 1 cut(s) 223
BclI TGATCA 1 cut(s) 502
BcoDI GTCTC 2 cut(s) 66, 444
BfaI CTAG 3 cut(s) 216, 423, 676
BfoI RGCGCY 1 cut(s) 163
BfrI CTTAAG 1 cut(s) 455
BisI GCNGC 2 cut(s) 33, 153
BlpI GCTNAGC 1 cut(s) 240
BlsI GCNGC 2 cut(s) 34, 154
Bme1390I CCNGG 1 cut(s) 223
BmeT110I CYCGRG 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 223
BmsI GCATC 1 cut(s) 642
Bpu1102I GCTNAGC 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 653
BsaI GGTCTC 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse1I ACTGG 2 cut(s) 133, 346
Bse3DI GCAATG 1 cut(s) 206
Bse8I GATNNNNATC 1 cut(s) 653
BseBI CCWGG 1 cut(s) 223
BseDI CCNNGG 1 cut(s) 70
BseJI GATNNNNATC 1 cut(s) 653
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMI GCAATG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 2 cut(s) 133, 346
BseRI GAGGAG 3 cut(s) 177, 462, 588
BseXI GCAGC 2 cut(s) 19, 139
BseYI CCCAGC 1 cut(s) 550
BshFI GGCC 2 cut(s) 69, 75
BsiHKAI GWGCWC 1 cut(s) 54
BsiHKCI CYCGRG 1 cut(s) 482
BslI CCNNNNNNNGG 1 cut(s) 488
BsmAI GTCTC 2 cut(s) 66, 444
BsnI GGCC 2 cut(s) 69, 75
Bso31I GGTCTC 1 cut(s) 444
BsoBI CYCGRG 1 cut(s) 482
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 3 cut(s) 5, 502, 654
Bsp1720I GCTNAGC 1 cut(s) 240
BspACI CCGC 3 cut(s) 24, 30, 383
BspANI GGCC 2 cut(s) 69, 75
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 76
BspTI CTTAAG 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 444
BsrDI GCAATG 1 cut(s) 206
BsrI ACTGG 2 cut(s) 133, 346
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 3 cut(s) 5, 502, 654
Bst2UI CCWGG 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 663
BstAFI CTTAAG 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 293
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 2 cut(s) 162, 350
BstKTI GATC 3 cut(s) 8, 505, 657
BstMAI GTCTC 2 cut(s) 66, 444
BstMBI GATC 3 cut(s) 5, 502, 654
BstMWI GCNNNNNNNGC 4 cut(s) 32, 326, 389, 630
BstNI CCWGG 1 cut(s) 223
BstNSI RCATGY 2 cut(s) 61, 295
BstSCI CCNGG 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 19, 139
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BsuRI GGCC 2 cut(s) 69, 75
BtgI CCRYGG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 3 cut(s) 15, 254, 502
Cac8I GCNNGC 1 cut(s) 293
CfoI GCGC 2 cut(s) 162, 350
Cfr13I GGNCC 1 cut(s) 74
CsiI ACCWGGT 1 cut(s) 221
Csp6I GTAC 1 cut(s) 331
CviAII CATG 4 cut(s) 58, 145, 292, 351
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 1 cut(s) 240
DpnI GATC 3 cut(s) 7, 504, 656
DpnII GATC 3 cut(s) 5, 502, 654
EaeI YGGCCR 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 444
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 230
Eco88I CYCGRG 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 221
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 4 cut(s) 61, 148, 295, 354
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FatI CATG 4 cut(s) 57, 144, 291, 350
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 2 cut(s) 33, 153
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 2 cut(s) 33, 153
FspBI CTAG 3 cut(s) 216, 423, 676
GlaI GCGC 2 cut(s) 161, 349
GluI GCNGC 2 cut(s) 33, 153
GsaI CCCAGC 1 cut(s) 554
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 2 cut(s) 69, 75
HhaI GCGC 2 cut(s) 162, 350
Hin1II CATG 4 cut(s) 61, 148, 295, 354
Hin6I GCGC 2 cut(s) 160, 348
HinP1I GCGC 2 cut(s) 160, 348
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 2 cut(s) 478, 492
HphI GGTGA 3 cut(s) 191, 487, 566
Hpy166II GTNNAC 1 cut(s) 339
Hpy188I TCNGA 2 cut(s) 168, 659
Hpy188III TCNNGA 2 cut(s) 111, 482
Hpy8I GTNNAC 1 cut(s) 339
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 663
HpyCH4V TGCA 3 cut(s) 155, 392, 643
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 326, 389, 630
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 4 cut(s) 61, 148, 295, 354
HspAI GCGC 2 cut(s) 160, 348
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 3 cut(s) 5, 502, 654
LpnPI CCDG 9 cut(s) 96, 114, 208, 235, 327, 384, 458, 520, 536
Lsp1109I GCAGC 2 cut(s) 19, 139
LweI GCATC 1 cut(s) 642
MabI ACCWGGT 1 cut(s) 221
MaeI CTAG 3 cut(s) 216, 423, 676
MaeIII GTNAC 1 cut(s) 140
MalI GATC 3 cut(s) 7, 504, 656
MboI GATC 3 cut(s) 5, 502, 654
MboII GAAGA 1 cut(s) 590
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 5 cut(s) 116, 267, 279, 435, 557
MmeI TCCRAC 2 cut(s) 519, 570
MnlI CCTC 7 cut(s) 37, 92, 198, 223, 440, 482, 566
MseI TTAA 2 cut(s) 119, 456
MslI CAYNNNNRTG 1 cut(s) 638
MspA1I CMGCKG 1 cut(s) 32
MspCI CTTAAG 1 cut(s) 455
MspR9I CCNGG 1 cut(s) 223
MvaI CCWGG 1 cut(s) 223
MwoI GCNNNNNNNGC 4 cut(s) 32, 326, 389, 630
NdeII GATC 3 cut(s) 5, 502, 654
NlaIII CATG 4 cut(s) 61, 148, 295, 354
NlaIV GGNNCC 1 cut(s) 76
NmeAIII GCCGAG 1 cut(s) 45
NspI RCATGY 2 cut(s) 61, 295
PaeI GCATGC 1 cut(s) 295
PciI ACATGT 1 cut(s) 57
PfeI GAWTC 2 cut(s) 478, 492
PkrI GCNGC 2 cut(s) 34, 154
PscI ACATGT 1 cut(s) 57
Psp124BI GAGCTC 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 221
PspFI CCCAGC 1 cut(s) 550
PspGI CCWGG 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 74
PsuI RGATCY 1 cut(s) 5
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
RseI CAYNNNNRTG 1 cut(s) 638
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 119, 456
SatI GCNGC 2 cut(s) 33, 153
Sau3AI GATC 3 cut(s) 5, 502, 654
Sau96I GGNCC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 223
SduI GDGCHC 1 cut(s) 54
SetI ASST 8 cut(s) 54, 154, 227, 241, 246, 322, 456, 552
SexAI ACCWGGT 1 cut(s) 221
SfaNI GCATC 1 cut(s) 642
SmiMI CAYNNNNRTG 1 cut(s) 638
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SphI GCATGC 1 cut(s) 295
Sse9I AATT 5 cut(s) 116, 267, 279, 435, 557
SsiI CCGC 3 cut(s) 24, 30, 383
SspMI CTAG 3 cut(s) 216, 423, 676
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 663
TaqI TCGA 3 cut(s) 87, 190, 228
TasI AATT 5 cut(s) 116, 267, 279, 435, 557
TfiI GAWTC 2 cut(s) 478, 492
Tru1I TTAA 2 cut(s) 119, 456
Tru9I TTAA 2 cut(s) 119, 456
TscAI CASTG 3 cut(s) 22, 254, 502
TseI GCWGC 2 cut(s) 32, 152
TspDTI ATGAA 2 cut(s) 429, 560
TspRI CASTG 3 cut(s) 22, 254, 502
Vha464I CTTAAG 1 cut(s) 455
XapI RAATTY 2 cut(s) 267, 557
XceI RCATGY 2 cut(s) 61, 295
XspI CTAG 3 cut(s) 216, 423, 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.