Rroxscaffold_6G00426910

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000189
Physical Location & Seq
Reverse (-)
47558219 .. 47559910
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00426910.1

Sequence Viewer

Length: 891 bp
ATGCGTAACGATGAAGAAGATGGACGAGGAGGAGGAGGAATCACCTGCGGCGCTGTGACGGTGGAGATGGATCTGCAGGCTTTGCCGGAGGGATGCATAGCCAACGTCATCTCCCTGACGACTCCTCCCGATGCGTGCCGGCTGTCGTCGGTTTCGAGGAGTTTCAGGTCGGCCGCCGAATCCGACGCCGTTTGGAGCAGGTTCCTGCCGCCGGAGATTCCCACGATCCTGTCTCACTCGGGGCCTCACGCCCCCAGTTGCCGATCCAAATCCAAGGAGTTCTACCTCGCTCTCTGCGACAATCCGGTGCTCATTGACGATGGCAAAATGAGCTTTTCACTAGACAAATGGAGTGGGAAAAAATGTTACATGGTATCTGCAAGAGCCCTTGTGATTGTTTGGGCTGATACTCCTAGCTATTGGAAATGGATTTCTCTCCCCGAGTCCAGATTTGAGGAGGTTGCTGAGCTTGTTGGTGTTTGCTGGCTTGAAATCCGTGGCAAAATTGACACTCGCTTGCTGTCCCCATCGACTGTGTACAAAGCTTACCTTGTGTTCAAGTCAACTGCAGCGGCTTATGGATTTGACTACCAATCTGCCGAGGTCAGTGTAGGTCTGGTTGGAGGAGCAGAACCCACAAAGAATATTGTGTTTCTTGACGCCGATAGAGGCCGGATTTTGGTGCAAGTGTCCCAGCCCAGAGAGATCAATGGCAATCAATACCCGAAGGAAAGAGCAGACGGGTGGTTGGAGATTGAGCTGGGTGAGTTCTTCTGTGAAGGAGGAGTAGATGGGGAGTTGGAAATGACTTGTTTGGAAACCAGGGGTGGTCAGTGGAAGGGTGGTCTTATTGTTCAAGGCATTGAGGTCAGGCCAAAGAGGAAGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

296

Amino Acids

32.53

Weight (kDa)

5.14

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 26 - 68 2.5e-06 F-box-like
F-box PF00646 26 - 66 3.7e-06 F-box domain
PP2 PF14299 120 - 292 2.1e-58 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 53
Acc36I ACCTGC 2 cut(s) 53, 189
AciI CCGC 4 cut(s) 48, 174, 209, 572
AclWI GGATC 3 cut(s) 78, 220, 258
AcoI YGGCCR 1 cut(s) 171
AcyI GRCGYC 2 cut(s) 186, 660
AfaI GTAC 1 cut(s) 539
AfiI CCNNNNNNNGG 2 cut(s) 211, 679
AgsI TTSAA 3 cut(s) 491, 559, 857
AjnI CCWGG 1 cut(s) 821
AluBI AGCT 5 cut(s) 333, 417, 469, 545, 760
AluI AGCT 5 cut(s) 333, 417, 469, 545, 760
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 3 cut(s) 78, 220, 258
Ama87I CYCGRG 2 cut(s) 238, 440
AoxI GGCC 4 cut(s) 171, 242, 670, 872
ApeKI GCWGC 1 cut(s) 569
ArsI GACNNNNNNTTYG 1 cut(s) 869
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 34, 776
AvaI CYCGRG 2 cut(s) 238, 440
BanII GRGCYC 1 cut(s) 388
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 581
BccI CCATC 5 cut(s) 14, 61, 314, 535, 785
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 823
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 3 cut(s) 341, 414, 889
BfmI CTRYAG 2 cut(s) 74, 567
BfoI RGCGCY 1 cut(s) 54
BfuAI ACCTGC 2 cut(s) 53, 189
BisI GCNGC 5 cut(s) 49, 174, 209, 570, 573
BlpI GCTNAGC 1 cut(s) 465
BlsI GCNGC 5 cut(s) 50, 175, 210, 571, 574
Bme1390I CCNGG 1 cut(s) 823
BmeT110I CYCGRG 2 cut(s) 238, 440
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 2 cut(s) 203, 243
BmrFI CCNGG 1 cut(s) 823
BmrI ACTGGG 1 cut(s) 249
BmsI GCATC 2 cut(s) 83, 121
BmuI ACTGGG 1 cut(s) 249
Bpu1102I GCTNAGC 1 cut(s) 465
BsaBI GATNNNNATC 1 cut(s) 268
BsaHI GRCGYC 2 cut(s) 186, 660
BsaJI CCNNGG 4 cut(s) 273, 496, 600, 822
BsaWI WCCGGW 1 cut(s) 304
BsaXI ACNNNNNCTCC 4 cut(s) 95, 109, 125, 139
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 679
Bse118I RCCGGY 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 255
Bse8I GATNNNNATC 1 cut(s) 268
BseBI CCWGG 1 cut(s) 823
BseDI CCNNGG 4 cut(s) 273, 496, 600, 822
BseGI GGATG 1 cut(s) 98
BseJI GATNNNNATC 1 cut(s) 268
BseLI CCNNNNNNNGG 2 cut(s) 211, 679
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 1 cut(s) 255
BseRI GAGGAG 8 cut(s) 42, 45, 48, 114, 172, 470, 639, 798
BseX3I CGGCCG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 581
BseYI CCCAGC 2 cut(s) 693, 760
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 4 cut(s) 173, 244, 672, 874
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 2 cut(s) 238, 440
BsiSI CCGG 5 cut(s) 86, 139, 212, 305, 673
BslFI GGGAC 2 cut(s) 508, 676
BslI CCNNNNNNNGG 2 cut(s) 211, 679
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 2 cut(s) 508, 676
BsnI GGCC 4 cut(s) 173, 244, 672, 874
BsoBI CYCGRG 2 cut(s) 238, 440
Bsp1286I GDGCHC 2 cut(s) 312, 388
Bsp1407I TGTACA 1 cut(s) 537
Bsp143I GATC 4 cut(s) 70, 225, 263, 705
Bsp1720I GCTNAGC 1 cut(s) 465
BspACI CCGC 4 cut(s) 48, 174, 209, 572
BspANI GGCC 4 cut(s) 173, 244, 672, 874
BspCNI CTCAG 1 cut(s) 457
BspLI GGNNCC 2 cut(s) 203, 243
BspMAI CTGCAG 2 cut(s) 78, 571
BspMI ACCTGC 2 cut(s) 53, 189
BspPI GGATC 3 cut(s) 78, 220, 258
BsrFI RCCGGY 1 cut(s) 138
BsrGI TGTACA 1 cut(s) 537
BsrI ACTGG 1 cut(s) 255
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 4 cut(s) 273, 496, 600, 822
BssMI GATC 4 cut(s) 70, 225, 263, 705
BssNI GRCGYC 2 cut(s) 186, 660
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 823
Bst4CI ACNGT 2 cut(s) 61, 535
BstACI GRCGYC 2 cut(s) 186, 660
BstAPI GCANNNNNTGC 1 cut(s) 82
BstAUI TGTACA 1 cut(s) 537
BstC8I GCNNGC 5 cut(s) 78, 136, 140, 485, 518
BstDEI CTNAG 1 cut(s) 465
BstDSI CCRYGG 1 cut(s) 496
BstF5I GGATG 1 cut(s) 98
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 4 cut(s) 73, 228, 266, 708
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 4 cut(s) 70, 225, 263, 705
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 2 cut(s) 82, 330
BstNI CCWGG 1 cut(s) 823
BstSCI CCNGG 1 cut(s) 821
BstSFI CTRYAG 2 cut(s) 74, 567
BstV1I GCAGC 1 cut(s) 581
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BstZI CGGCCG 1 cut(s) 171
BsuRI GGCC 4 cut(s) 173, 244, 672, 874
BtgI CCRYGG 1 cut(s) 496
BtsCI GGATG 1 cut(s) 98
BtsIMutI CAGTG 2 cut(s) 613, 839
BveI ACCTGC 2 cut(s) 53, 189
Cac8I GCNNGC 5 cut(s) 78, 136, 140, 485, 518
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 242
CseI GACGC 2 cut(s) 194, 668
Csp6I GTAC 1 cut(s) 538
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 1 cut(s) 370
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 1 cut(s) 465
DpnI GATC 4 cut(s) 72, 227, 265, 707
DpnII GATC 4 cut(s) 70, 225, 263, 705
EaeI YGGCCR 1 cut(s) 171
EagI CGGCCG 1 cut(s) 171
EclXI CGGCCG 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 388
Eco52I CGGCCG 1 cut(s) 171
Eco88I CYCGRG 2 cut(s) 238, 440
EcoO109I RGGNCCY 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 821
EcoT14I CCWWGG 1 cut(s) 273
EcoT22I ATGCAT 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 1 cut(s) 373
FaiI YATR 3 cut(s) 98, 371, 579
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FaqI GGGAC 2 cut(s) 508, 676
FatI CATG 1 cut(s) 369
Fnu4HI GCNGC 5 cut(s) 49, 174, 209, 570, 573
FokI GGATG 1 cut(s) 105
FriOI GRGCYC 1 cut(s) 388
Fsp4HI GCNGC 5 cut(s) 49, 174, 209, 570, 573
FspBI CTAG 3 cut(s) 341, 414, 889
GlaI GCGC 1 cut(s) 52
GluI GCNGC 5 cut(s) 49, 174, 209, 570, 573
GsaI CCCAGC 2 cut(s) 697, 764
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 4 cut(s) 173, 244, 672, 874
HapII CCGG 5 cut(s) 86, 139, 212, 305, 673
HgaI GACGC 2 cut(s) 194, 668
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 2 cut(s) 186, 660
Hin1II CATG 1 cut(s) 373
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 564
HindII GTYRAC 1 cut(s) 564
HindIII AAGCTT 1 cut(s) 543
HinfI GANTC 5 cut(s) 39, 121, 179, 217, 443
HpaII CCGG 5 cut(s) 86, 139, 212, 305, 673
HphI GGTGA 2 cut(s) 34, 776
Hpy166II GTNNAC 2 cut(s) 538, 564
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 3 cut(s) 128, 447, 656
Hpy8I GTNNAC 2 cut(s) 538, 564
Hpy99I CGWCG 2 cut(s) 151, 188
HpyAV CCTTC 3 cut(s) 721, 773, 832
HpyCH4III ACNGT 2 cut(s) 61, 535
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 5 cut(s) 76, 96, 380, 569, 685
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 330
HpyF3I CTNAG 1 cut(s) 465
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 2 cut(s) 186, 660
Hsp92II CATG 1 cut(s) 373
HspAI GCGC 1 cut(s) 51
KroI GCCGGC 1 cut(s) 138
KroNI GCCGGC 1 cut(s) 140
Kzo9I GATC 4 cut(s) 70, 225, 263, 705
LmnI GCTCC 2 cut(s) 195, 626
Lsp1109I GCAGC 1 cut(s) 581
LweI GCATC 2 cut(s) 83, 121
MaeI CTAG 3 cut(s) 341, 414, 889
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 3 cut(s) 5, 55, 365
MalI GATC 4 cut(s) 72, 227, 265, 707
MboI GATC 4 cut(s) 70, 225, 263, 705
MboII GAAGA 3 cut(s) 26, 29, 763
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 2 cut(s) 312, 388
MluCI AATT 1 cut(s) 504
MlyI GAGTC 2 cut(s) 115, 452
MmeI TCCRAC 4 cut(s) 207, 601, 729, 780
Mph1103I ATGCAT 1 cut(s) 98
MroNI GCCGGC 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 572
MspI CCGG 5 cut(s) 86, 139, 212, 305, 673
MspR9I CCNGG 1 cut(s) 823
MvaI CCWGG 1 cut(s) 823
MwoI GCNNNNNNNGC 2 cut(s) 82, 330
NaeI GCCGGC 1 cut(s) 140
NdeII GATC 4 cut(s) 70, 225, 263, 705
NgoMIV GCCGGC 1 cut(s) 138
NlaIII CATG 1 cut(s) 373
NlaIV GGNNCC 2 cut(s) 203, 243
NmeAIII GCCGAG 1 cut(s) 625
NmuCI GTSAC 1 cut(s) 55
NsiI ATGCAT 1 cut(s) 98
PaqCI CACCTGC 1 cut(s) 53
PcsI WCGNNNNNNNCGW 2 cut(s) 152, 294
PdiI GCCGGC 1 cut(s) 140
PfeI GAWTC 3 cut(s) 39, 179, 217
PkrI GCNGC 5 cut(s) 50, 175, 210, 571, 574
PleI GAGTC 2 cut(s) 115, 451
PpsI GAGTC 2 cut(s) 115, 451
Psp6I CCWGG 1 cut(s) 821
PspFI CCCAGC 2 cut(s) 693, 760
PspGI CCWGG 1 cut(s) 821
PspN4I GGNNCC 2 cut(s) 203, 243
PspPI GGNCC 1 cut(s) 242
PstI CTGCAG 2 cut(s) 78, 571
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
SatI GCNGC 5 cut(s) 49, 174, 209, 570, 573
Sau3AI GATC 4 cut(s) 70, 225, 263, 705
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 2 cut(s) 115, 452
ScrFI CCNGG 1 cut(s) 823
SduI GDGCHC 2 cut(s) 312, 388
SfaNI GCATC 2 cut(s) 83, 121
SfcI CTRYAG 2 cut(s) 74, 567
Sse9I AATT 1 cut(s) 504
SsiI CCGC 4 cut(s) 48, 174, 209, 572
SspI AATATT 1 cut(s) 646
SspMI CTAG 3 cut(s) 341, 414, 889
StyD4I CCNGG 1 cut(s) 821
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 2 cut(s) 61, 535
TaiI ACGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 155, 530
TasI AATT 1 cut(s) 504
TatI WGTACW 1 cut(s) 537
TauI GCSGC 4 cut(s) 51, 176, 211, 575
TfiI GAWTC 3 cut(s) 39, 179, 217
TscAI CASTG 2 cut(s) 613, 839
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 569
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 1 cut(s) 485
TspRI CASTG 2 cut(s) 613, 839
XspI CTAG 3 cut(s) 341, 414, 889
Zsp2I ATGCAT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.