Rh3AG013700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000189
Physical Location & Seq
Reverse (-)
845011 .. 847481
2471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG013700.1

Sequence Viewer

Length: 672 bp
ATGTCTATATATATATGCTATATTCCTATGATGGTGACTGTTCTTGACATTGTGCAGAGCTTTTCACTAGACAAATGGAGTGGGAAAAAATGTTACATGGTATCTGCAAGGGACCTTGTGATTGTTTGGGCTGATACTCCTAACTATTGGAAGTGGATTTCTCTGCCCGAGTCCAGATTTGAGGAGGTTGCTGAGCTTGTTGGTGTTTGCTGGCTTGAAATCCGTGGCAAAATTGACACTCGCTTGCTGTCCCCATCGACTGTGTACAAAGCTTACCTTGTGTTCAAGTCAACTGCAGCGGCTTATGGATTTGACTACCAACCAGCCGAGGTCAGTGTAGGTCTGGTTGGAGGAGCAGAACCCACAAAGAAGACTGTGTTTCTTGACGCCGATAGAGGCCGGACTCAGAGCTACCAGATTGTGCCAAGGCGTCTTGGCCTACACCTGAGAAACCGCATTTTGGTACAAGTATCCCAGCCCAGAGAGATCAATGACAATCAATACCCGAAGGAAAGAGCAGACGGGTGGTTGGAGATTGAGCTGGGTGAGTTCTTCTGTGAAGGAGGAGTAGATGGGGAGTTGGAAATGACTTGTTTGGAAACCGGGGGTGGTCAGTGGAAGGGTGGTCTTATTGTTCAAGGCATTGAGGTCAGGCCAAAGAGGAAGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

223

Amino Acids

25.27

Weight (kDa)

5.99

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 29 - 219 3.9e-59 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 299, 454
AcyI GRCGYC 2 cut(s) 387, 430
AfaI GTAC 2 cut(s) 266, 465
AfiI CCNNNNNNNGG 1 cut(s) 460
AgsI TTSAA 3 cut(s) 218, 286, 638
AluBI AGCT 5 cut(s) 60, 196, 272, 411, 541
AluI AGCT 5 cut(s) 60, 196, 272, 411, 541
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 3 cut(s) 397, 436, 653
ApeKI GCWGC 1 cut(s) 296
ArsI GACNNNNNNTTYG 1 cut(s) 650
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 604
AsuHPI GGTGA 2 cut(s) 46, 557
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 377
BbvI GCAGC 1 cut(s) 308
BccI CCATC 3 cut(s) 25, 262, 566
BciVI GTATCC 1 cut(s) 481
BcnI CCSGG 1 cut(s) 604
BfaI CTAG 2 cut(s) 68, 670
BfmI CTRYAG 1 cut(s) 294
BfuI GTATCC 1 cut(s) 481
BisI GCNGC 2 cut(s) 297, 300
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 2 cut(s) 298, 301
Bme1390I CCNGG 1 cut(s) 604
Bme18I GGWCC 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 604
BpiI GAAGAC 1 cut(s) 377
Bpu1102I GCTNAGC 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 604
BsaHI GRCGYC 2 cut(s) 387, 430
BsaJI CCNNGG 4 cut(s) 223, 327, 425, 603
Bsc4I CCNNNNNNNGG 1 cut(s) 460
BseDI CCNNGG 4 cut(s) 223, 327, 425, 603
BseLI CCNNNNNNNGG 1 cut(s) 460
BseMII CTCAG 3 cut(s) 183, 419, 437
BseRI GAGGAG 3 cut(s) 197, 366, 579
BseXI GCAGC 1 cut(s) 308
BseYI CCCAGC 2 cut(s) 474, 541
BsgI GTGCAG 1 cut(s) 74
BshFI GGCC 3 cut(s) 399, 438, 655
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 2 cut(s) 400, 603
BslFI GGGAC 2 cut(s) 125, 235
BslI CCNNNNNNNGG 1 cut(s) 460
BsmFI GGGAC 2 cut(s) 125, 235
BsnI GGCC 3 cut(s) 399, 438, 655
BsoBI CYCGRG 1 cut(s) 167
Bsp1407I TGTACA 1 cut(s) 264
Bsp143I GATC 1 cut(s) 486
Bsp1720I GCTNAGC 1 cut(s) 192
BspACI CCGC 2 cut(s) 299, 454
BspANI GGCC 3 cut(s) 399, 438, 655
BspCNI CTCAG 3 cut(s) 184, 418, 438
BspLI GGNNCC 1 cut(s) 113
BspMAI CTGCAG 1 cut(s) 298
BsrGI TGTACA 1 cut(s) 264
BssECI CCNNGG 4 cut(s) 223, 327, 425, 603
BssMI GATC 1 cut(s) 486
BssNI GRCGYC 2 cut(s) 387, 430
BssT1I CCWWGG 1 cut(s) 425
Bst4CI ACNGT 3 cut(s) 40, 262, 376
BstACI GRCGYC 2 cut(s) 387, 430
BstAUI TGTACA 1 cut(s) 264
BstC8I GCNNGC 2 cut(s) 212, 245
BstDEI CTNAG 3 cut(s) 192, 405, 446
BstDSI CCRYGG 1 cut(s) 223
BstKTI GATC 1 cut(s) 489
BstMBI GATC 1 cut(s) 486
BstSCI CCNGG 1 cut(s) 602
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 308
BstV2I GAAGAC 1 cut(s) 377
BsuI GTATCC 1 cut(s) 481
BsuRI GGCC 3 cut(s) 399, 438, 655
BtgI CCRYGG 1 cut(s) 223
BtsIMutI CAGTG 2 cut(s) 340, 620
Cac8I GCNNGC 2 cut(s) 212, 245
Cfr13I GGNCC 1 cut(s) 112
CseI GACGC 2 cut(s) 395, 419
Csp6I GTAC 2 cut(s) 265, 464
CspCI CAANNNNNGTGG 2 cut(s) 61, 96
CviAII CATG 1 cut(s) 97
CviQI GTAC 2 cut(s) 265, 464
DdeI CTNAG 3 cut(s) 192, 405, 446
DpnI GATC 1 cut(s) 488
DpnII GATC 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 425
Eco47I GGWCC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 425
ErhI CCWWGG 1 cut(s) 425
FaeI CATG 1 cut(s) 100
FaiI YATR 9 cut(s) 8, 10, 12, 14, 16, 21, 29, 98, 306
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FaqI GGGAC 2 cut(s) 125, 235
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 2 cut(s) 297, 300
Fsp4HI GCNGC 2 cut(s) 297, 300
FspBI CTAG 2 cut(s) 68, 670
GluI GCNGC 2 cut(s) 297, 300
GsaI CCCAGC 2 cut(s) 478, 545
HaeIII GGCC 3 cut(s) 399, 438, 655
HapII CCGG 2 cut(s) 400, 603
HgaI GACGC 2 cut(s) 395, 419
Hin1I GRCGYC 2 cut(s) 387, 430
Hin1II CATG 1 cut(s) 100
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HindIII AAGCTT 1 cut(s) 270
HinfI GANTC 2 cut(s) 170, 403
HpaII CCGG 2 cut(s) 400, 603
HphI GGTGA 2 cut(s) 46, 557
Hpy166II GTNNAC 2 cut(s) 265, 291
Hpy188I TCNGA 1 cut(s) 408
Hpy188III TCNNGA 3 cut(s) 44, 174, 383
Hpy8I GTNNAC 2 cut(s) 265, 291
HpyAV CCTTC 3 cut(s) 502, 554, 613
HpyCH4III ACNGT 3 cut(s) 40, 262, 376
HpyCH4V TGCA 3 cut(s) 55, 107, 296
HpyF3I CTNAG 3 cut(s) 192, 405, 446
Hsp92I GRCGYC 2 cut(s) 387, 430
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 1 cut(s) 486
LmnI GCTCC 1 cut(s) 353
Lsp1109I GCAGC 1 cut(s) 308
MaeI CTAG 2 cut(s) 68, 670
MaeIII GTNAC 2 cut(s) 34, 92
MalI GATC 1 cut(s) 488
MboI GATC 1 cut(s) 486
MboII GAAGA 2 cut(s) 382, 544
MluCI AATT 1 cut(s) 231
MlyI GAGTC 2 cut(s) 179, 397
MmeI TCCRAC 3 cut(s) 328, 510, 561
MnlI CCTC 8 cut(s) 175, 178, 322, 344, 389, 557, 640, 654
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 2 cut(s) 400, 603
MspR9I CCNGG 1 cut(s) 604
NciI CCSGG 1 cut(s) 604
NdeII GATC 1 cut(s) 486
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 113
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 34
PkrI GCNGC 2 cut(s) 298, 301
PleI GAGTC 2 cut(s) 178, 397
PpsI GAGTC 2 cut(s) 178, 397
PpuMI RGGWCCY 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 112
PspFI CCCAGC 2 cut(s) 474, 541
PspN4I GGNNCC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 112
PspPPI RGGWCCY 1 cut(s) 112
PstI CTGCAG 1 cut(s) 298
RsaI GTAC 2 cut(s) 266, 465
RsaNI GTAC 2 cut(s) 265, 464
SatI GCNGC 2 cut(s) 297, 300
Sau3AI GATC 1 cut(s) 486
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 2 cut(s) 179, 397
ScrFI CCNGG 1 cut(s) 604
SfcI CTRYAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 112
Sse9I AATT 1 cut(s) 231
SsiI CCGC 2 cut(s) 299, 454
SspMI CTAG 2 cut(s) 68, 670
StyD4I CCNGG 1 cut(s) 602
StyI CCWWGG 1 cut(s) 425
TaaI ACNGT 3 cut(s) 40, 262, 376
TaqI TCGA 1 cut(s) 257
TasI AATT 1 cut(s) 231
TatI WGTACW 1 cut(s) 264
TauI GCSGC 1 cut(s) 302
TscAI CASTG 2 cut(s) 340, 620
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 34
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 340, 620
VpaK11BI GGWCC 1 cut(s) 112
XspI CTAG 2 cut(s) 68, 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.