Rh2DG050700

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000189
Physical Location & Seq
Reverse (-)
3633483 .. 3634145
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG050700.1

Sequence Viewer

Length: 663 bp
ATGGCTCGGTGCGACACCCCCGTCCTCATTGACGAGGGCTACACGAGCTTTTCACTAGACAAATGGAGTGGGAAGGAGTGCTATATGATAGCTGCAAAGCGCCTTCGGATTGCTTGGGGTGATACTCGTCGATATTGGAGATGGAAATCTCTGACTCAGTCCAGGTTTAAGGAGGTGGCCGAGCTTCGTGTCGTATGTTGGCTTGAAATCCGTGGGAGAATTGAAACGCGCATGCTGTCCCCATCCACGACTTATAAAGCTTATCTGGTGTACGAGTTAATTGAAAGCACTGAACGAGACTGGGCCTGTGAGCCTGTCGTGGTCACAGTAGGTGCAAGAGCTTATGGGTTTGATTATGAATGCCCTGGTTTGAAGGAACTAACTGCAGGCATTAAGCACACTGCGTTTCTGGGCCCCAAAGAGAAATACAAGCACAGGCTGCACAGCAAAGGGAAATACAAGCACAGTTTGCAAGAAATCGGTGAAGCTAAATTTCCAAATGAAAGCAGGGCGGATGGGTGGCTGGAGATGGAGCTGGGTGAGTATCACTGTCAAGGGGATGAAGACGGGGAATTGGAGATGATTTGTTGTGAGATTGAGACTGGTATGGGTAAGGGTGGTCTCATTGTTCAAGGGATTGAGGTCAGACCGAAAAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

220

Amino Acids

25.39

Weight (kDa)

6.95

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 25 - 217 2e-47 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AasI GACNNNNNNGTC 1 cut(s) 20
AccII CGCG 1 cut(s) 229
AciI CCGC 1 cut(s) 512
AcoI YGGCCR 1 cut(s) 177
AcsI RAATTY 1 cut(s) 491
AfaI GTAC 1 cut(s) 272
AgsI TTSAA 5 cut(s) 206, 224, 284, 373, 632
AjnI CCWGG 2 cut(s) 161, 364
AluBI AGCT 7 cut(s) 48, 92, 184, 260, 341, 488, 535
AluI AGCT 7 cut(s) 48, 92, 184, 260, 341, 488, 535
Alw26I GTCTC 3 cut(s) 291, 593, 626
AoxI GGCC 3 cut(s) 177, 303, 412
ApaI GGGCCC 1 cut(s) 416
ApeKI GCWGC 2 cut(s) 92, 439
ApoI RAATTY 1 cut(s) 491
AspLEI GCGC 2 cut(s) 102, 231
AspS9I GGNCC 3 cut(s) 303, 412, 413
AsuHPI GGTGA 3 cut(s) 131, 494, 551
BaeGI GKGCMC 1 cut(s) 416
BanII GRGCYC 1 cut(s) 416
BauI CACGAG 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 570
BbvI GCAGC 2 cut(s) 79, 426
BccI CCATC 4 cut(s) 135, 250, 509, 523
BciT130I CCWGG 2 cut(s) 163, 366
BcoDI GTCTC 3 cut(s) 291, 593, 626
BfaI CTAG 2 cut(s) 56, 661
BfmI CTRYAG 1 cut(s) 384
BfoI RGCGCY 1 cut(s) 103
BisI GCNGC 2 cut(s) 93, 440
BlsI GCNGC 2 cut(s) 94, 441
Bme1390I CCNGG 2 cut(s) 163, 366
BmgT120I GGNCC 3 cut(s) 303, 412, 413
BmiI GGNNCC 2 cut(s) 414, 415
BmrFI CCNGG 2 cut(s) 163, 366
BmrI ACTGGG 1 cut(s) 310
BmuI ACTGGG 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 570
BpmI CTGGAG 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 145
BsaI GGTCTC 1 cut(s) 626
BsaJI CCNNGG 2 cut(s) 211, 364
Bse1I ACTGG 2 cut(s) 305, 607
Bse8I GATNNNNATC 1 cut(s) 145
BseBI CCWGG 2 cut(s) 163, 366
BseDI CCNNGG 2 cut(s) 211, 364
BseGI GGATG 3 cut(s) 242, 520, 565
BseJI GATNNNNATC 1 cut(s) 145
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 2 cut(s) 305, 607
BseSI GKGCMC 1 cut(s) 416
BseXI GCAGC 2 cut(s) 79, 426
BseYI CCCAGC 1 cut(s) 535
BsgI GTGCAG 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 229
BshFI GGCC 3 cut(s) 179, 305, 414
BslFI GGGAC 1 cut(s) 223
BsmAI GTCTC 3 cut(s) 291, 593, 626
BsmFI GGGAC 1 cut(s) 223
BsmI GAATGC 1 cut(s) 365
BsnI GGCC 3 cut(s) 179, 305, 414
Bso31I GGTCTC 1 cut(s) 626
Bsp120I GGGCCC 1 cut(s) 412
Bsp1286I GDGCHC 1 cut(s) 416
BspACI CCGC 1 cut(s) 512
BspANI GGCC 3 cut(s) 179, 305, 414
BspCNI CTCAG 1 cut(s) 169
BspFNI CGCG 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 414, 415
BspMAI CTGCAG 1 cut(s) 388
BspTNI GGTCTC 1 cut(s) 626
BsrI ACTGG 2 cut(s) 305, 607
BssECI CCNNGG 2 cut(s) 211, 364
BssSI CACGAG 1 cut(s) 43
Bst2BI CACGAG 1 cut(s) 43
Bst2UI CCWGG 2 cut(s) 163, 366
Bst4CI ACNGT 3 cut(s) 328, 467, 551
BstAPI GCANNNNNTGC 2 cut(s) 439, 469
BstC8I GCNNGC 2 cut(s) 233, 388
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 3 cut(s) 242, 520, 565
BstFNI CGCG 1 cut(s) 229
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 2 cut(s) 102, 231
BstMAI GTCTC 3 cut(s) 291, 593, 626
BstMWI GCNNNNNNNGC 3 cut(s) 45, 439, 469
BstNI CCWGG 2 cut(s) 163, 366
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 2 cut(s) 161, 364
BstSFI CTRYAG 1 cut(s) 384
BstSLI GKGCMC 1 cut(s) 416
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 2 cut(s) 79, 426
BstV2I GAAGAC 1 cut(s) 570
BsuRI GGCC 3 cut(s) 179, 305, 414
BtgI CCRYGG 1 cut(s) 211
BtsCI GGATG 3 cut(s) 242, 520, 565
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 3 cut(s) 288, 399, 547
Cac8I GCNNGC 2 cut(s) 233, 388
CfoI GCGC 2 cut(s) 102, 231
Cfr13I GGNCC 3 cut(s) 303, 412, 413
Csp6I GTAC 1 cut(s) 271
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 1 cut(s) 232
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 1 cut(s) 156
DrdI GACNNNNNNGTC 1 cut(s) 20
DseDI GACNNNNNNGTC 1 cut(s) 20
EaeI YGGCCR 1 cut(s) 177
EciI GGCGGA 1 cut(s) 527
Eco24I GRGCYC 1 cut(s) 416
Eco31I GGTCTC 1 cut(s) 626
EcoO109I RGGNCCY 1 cut(s) 413
EcoRII CCWGG 2 cut(s) 161, 364
EcoT38I GRGCYC 1 cut(s) 416
FaeI CATG 1 cut(s) 235
FaiI YATR 8 cut(s) 84, 86, 196, 233, 255, 345, 357, 608
FaqI GGGAC 1 cut(s) 223
FatI CATG 1 cut(s) 231
Fnu4HI GCNGC 2 cut(s) 93, 440
FokI GGATG 3 cut(s) 229, 527, 572
FriOI GRGCYC 1 cut(s) 416
Fsp4HI GCNGC 2 cut(s) 93, 440
FspBI CTAG 2 cut(s) 56, 661
GlaI GCGC 2 cut(s) 101, 230
GluI GCNGC 2 cut(s) 93, 440
GsaI CCCAGC 1 cut(s) 539
GsuI CTGGAG 1 cut(s) 545
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 3 cut(s) 179, 305, 414
HhaI GCGC 2 cut(s) 102, 231
Hin1II CATG 1 cut(s) 235
Hin6I GCGC 2 cut(s) 100, 229
HinP1I GCGC 2 cut(s) 100, 229
HindIII AAGCTT 1 cut(s) 258
HinfI GANTC 1 cut(s) 154
HphI GGTGA 3 cut(s) 131, 494, 551
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 3 cut(s) 108, 153, 647
Hpy8I GTNNAC 1 cut(s) 271
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 3 cut(s) 67, 113, 367
HpyCH4III ACNGT 3 cut(s) 328, 467, 551
HpyCH4V TGCA 5 cut(s) 95, 335, 386, 442, 472
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 439, 469
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 1 cut(s) 235
HspAI GCGC 2 cut(s) 100, 229
LmnI GCTCC 1 cut(s) 532
Lsp1109I GCAGC 2 cut(s) 79, 426
MaeI CTAG 2 cut(s) 56, 661
MaeIII GTNAC 1 cut(s) 322
MboII GAAGA 1 cut(s) 575
MhlI GDGCHC 1 cut(s) 416
MluCI AATT 4 cut(s) 219, 279, 491, 572
MlyI GAGTC 1 cut(s) 148
MnlI CCTC 4 cut(s) 28, 35, 166, 634
MseI TTAA 3 cut(s) 168, 278, 393
MspR9I CCNGG 2 cut(s) 163, 366
Mva1269I GAATGC 1 cut(s) 365
MvaI CCWGG 2 cut(s) 163, 366
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 3 cut(s) 45, 439, 469
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 2 cut(s) 414, 415
NmeAIII GCCGAG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 322
NspI RCATGY 1 cut(s) 235
PaeI GCATGC 1 cut(s) 235
PctI GAATGC 1 cut(s) 365
PflFI GACNNNGTC 1 cut(s) 157
PkrI GCNGC 2 cut(s) 94, 441
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PsiI TTATAA 1 cut(s) 255
Psp6I CCWGG 2 cut(s) 161, 364
PspFI CCCAGC 1 cut(s) 535
PspGI CCWGG 2 cut(s) 161, 364
PspN4I GGNNCC 2 cut(s) 414, 415
PspOMI GGGCCC 1 cut(s) 412
PspPI GGNCC 3 cut(s) 303, 412, 413
PstI CTGCAG 1 cut(s) 388
PsyI GACNNNGTC 1 cut(s) 157
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SaqAI TTAA 3 cut(s) 168, 278, 393
SatI GCNGC 2 cut(s) 93, 440
Sau96I GGNCC 3 cut(s) 303, 412, 413
SchI GAGTC 1 cut(s) 148
ScrFI CCNGG 2 cut(s) 163, 366
SduI GDGCHC 1 cut(s) 416
SfcI CTRYAG 1 cut(s) 384
SphI GCATGC 1 cut(s) 235
Sse9I AATT 4 cut(s) 219, 279, 491, 572
SsiI CCGC 1 cut(s) 512
SspMI CTAG 2 cut(s) 56, 661
StyD4I CCNGG 2 cut(s) 161, 364
TaaI ACNGT 3 cut(s) 328, 467, 551
TaqI TCGA 1 cut(s) 130
TasI AATT 4 cut(s) 219, 279, 491, 572
Tru1I TTAA 3 cut(s) 168, 278, 393
Tru9I TTAA 3 cut(s) 168, 278, 393
TscAI CASTG 3 cut(s) 295, 406, 554
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 2 cut(s) 92, 439
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 3 cut(s) 372, 516, 576
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 3 cut(s) 295, 406, 554
Tth111I GACNNNGTC 1 cut(s) 157
XapI RAATTY 1 cut(s) 491
XceI RCATGY 1 cut(s) 235
XspI CTAG 2 cut(s) 56, 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.