Rh2BG613500

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000189
Physical Location & Seq
Forward (+)
83632203 .. 83632442
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG613500.1

Sequence Viewer

Length: 240 bp
ATGGAGCAGAAGAAGGAGAAAGAGGCTTGCGGAACAGTGATGGATCTGCAGCAGATGCCGGAGGGTTGCATAGCCAACATCGTATCGTTGACGACTCCTGAAGAGGCCTGCCGCCTGTCGTTGCTCTCTAAGAAATTCAAGTTAGCGGCGGAATCCGACGCCGTTTGGGACAAGTTCCTTCCGCCTGAGACACCCACGATCCAGTCCCAGTCCGGCGAATCTGGATTATTGGCCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

79

Amino Acids

8.57

Weight (kDa)

4.67

Isoelectric Point (pI)

68.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 30, 112, 146, 149, 182, 234
AclWI GGATC 2 cut(s) 51, 193
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 159
AgsI TTSAA 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 2 cut(s) 51, 193
AoxI GGCC 2 cut(s) 105, 231
ApeKI GCWGC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 134
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 34
BceAI ACGGC 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 182
BfmI CTRYAG 1 cut(s) 47
BisI GCNGC 4 cut(s) 50, 112, 147, 234
BlsI GCNGC 4 cut(s) 51, 113, 148, 235
BmrI ACTGGG 1 cut(s) 202
BmsI GCATC 1 cut(s) 45
BmuI ACTGGG 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 159
Bse1I ACTGG 2 cut(s) 202, 208
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 2 cut(s) 202, 208
BseXI GCAGC 1 cut(s) 61
BshFI GGCC 2 cut(s) 107, 233
BsiSI CCGG 2 cut(s) 59, 213
BslFI GGGAC 2 cut(s) 182, 190
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 2 cut(s) 182, 190
BsnI GGCC 2 cut(s) 107, 233
Bsp143I GATC 2 cut(s) 43, 198
BspACI CCGC 6 cut(s) 30, 112, 146, 149, 182, 234
BspANI GGCC 2 cut(s) 107, 233
BspCNI CTCAG 1 cut(s) 178
BspMAI CTGCAG 1 cut(s) 51
BspPI GGATC 2 cut(s) 51, 193
BsrI ACTGG 2 cut(s) 202, 208
BssMI GATC 2 cut(s) 43, 198
BssNI GRCGYC 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 55
BstC8I GCNNGC 2 cut(s) 28, 109
BstDEI CTNAG 2 cut(s) 129, 186
BstKTI GATC 2 cut(s) 46, 201
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 2 cut(s) 43, 198
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BsuRI GGCC 2 cut(s) 107, 233
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 28, 109
CseI GACGC 1 cut(s) 167
CviJI RGCY 4 cut(s) 26, 74, 107, 233
CviKI_1 RGCY 4 cut(s) 26, 74, 107, 233
DdeI CTNAG 2 cut(s) 129, 186
DpnI GATC 2 cut(s) 45, 200
DpnII GATC 2 cut(s) 43, 198
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
EciI GGCGGA 2 cut(s) 164, 171
Eco147I AGGCCT 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 120
FaiI YATR 1 cut(s) 71
FaqI GGGAC 2 cut(s) 182, 190
Fnu4HI GCNGC 4 cut(s) 50, 112, 147, 234
Fsp4HI GCNGC 4 cut(s) 50, 112, 147, 234
GluI GCNGC 4 cut(s) 50, 112, 147, 234
HaeIII GGCC 2 cut(s) 107, 233
HapII CCGG 2 cut(s) 59, 213
HgaI GACGC 1 cut(s) 167
Hin1I GRCGYC 1 cut(s) 159
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 3 cut(s) 94, 152, 218
HpaII CCGG 2 cut(s) 59, 213
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 98, 222
Hpy8I GTNNAC 1 cut(s) 90
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 7, 188
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 2 cut(s) 49, 69
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
HpyF3I CTNAG 2 cut(s) 129, 186
Hsp92I GRCGYC 1 cut(s) 159
Kzo9I GATC 2 cut(s) 43, 198
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 9 cut(s) 72, 111, 121, 128, 198, 207, 215, 221, 226
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 45
MalI GATC 2 cut(s) 45, 200
MboI GATC 2 cut(s) 43, 198
MboII GAAGA 2 cut(s) 22, 113
MflI RGATCY 1 cut(s) 43
MluCI AATT 1 cut(s) 134
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 3 cut(s) 16, 55, 97
MspI CCGG 2 cut(s) 59, 213
MwoI GCNNNNNNNGC 1 cut(s) 55
NdeII GATC 2 cut(s) 43, 198
PceI AGGCCT 1 cut(s) 107
PfeI GAWTC 2 cut(s) 152, 218
PkrI GCNGC 4 cut(s) 51, 113, 148, 235
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PstI CTGCAG 1 cut(s) 51
PsuI RGATCY 1 cut(s) 43
SatI GCNGC 4 cut(s) 50, 112, 147, 234
Sau3AI GATC 2 cut(s) 43, 198
SchI GAGTC 1 cut(s) 88
SfaNI GCATC 1 cut(s) 45
SfcI CTRYAG 1 cut(s) 47
Sse9I AATT 1 cut(s) 134
SseBI AGGCCT 1 cut(s) 107
SsiI CCGC 6 cut(s) 30, 112, 146, 149, 182, 234
StuI AGGCCT 1 cut(s) 107
TaaI ACNGT 1 cut(s) 37
TasI AATT 1 cut(s) 134
TauI GCSGC 3 cut(s) 114, 149, 236
TfiI GAWTC 2 cut(s) 152, 218
TscAI CASTG 1 cut(s) 42
TseI GCWGC 1 cut(s) 49
TspRI CASTG 1 cut(s) 42
XapI RAATTY 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.