RchiOBHm_Chr2g0168151

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000189
Physical Location & Seq
Forward (+)
82616294 .. 82616721
428 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53585

Sequence Viewer

Length: 408 bp
ATGAGCAAAGGAGACTTTTCGCTTTTGCTAAAGTTTCCAAGTGGGAAACACAAACCTCGTTCTTTATTTTTCTTTTTCTTTCTTTTCTCTCTTTTCTCCCTTTCGGCCGCACTCTCTCCTCATCATTTTTCTCTTTGTATCGTCTTCTTCCTCTCCCTGTCACTGACCATGGAGCAGAAGAAGGAGAAAGAGGCTTGCGGAACAGTGATGGATCTGCAGCAGATGCCGGAGGGTTGCATAGCCAACATCGTATCGTTGACGACTCCTGAAGAGGCCTGCCGCCTGTCGTTGCTCTCTAAGAACTTCAAGTTAGCGGCGGAATTCGACGCCGTTTGGGACAAGTTCCTTCCGCCTGAGACACCCACGATCCAGTCCCAGTCCGGCGAATCTGGATTATTGGCCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

135

Amino Acids

14.99

Weight (kDa)

6.27

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 108, 198, 280, 314, 317, 350, 402
AclWI GGATC 2 cut(s) 219, 361
AcoI YGGCCR 2 cut(s) 105, 399
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 327
AgsI TTSAA 1 cut(s) 307
Alw26I GTCTC 2 cut(s) 6, 350
AlwI GGATC 2 cut(s) 219, 361
AoxI GGCC 3 cut(s) 105, 273, 399
ApeKI GCWGC 1 cut(s) 217
ApoI RAATTY 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 229
BccI CCATC 1 cut(s) 202
BceAI ACGGC 1 cut(s) 314
BcoDI GTCTC 2 cut(s) 6, 350
BfmI CTRYAG 1 cut(s) 215
BisI GCNGC 5 cut(s) 108, 218, 280, 315, 402
BlsI GCNGC 5 cut(s) 109, 219, 281, 316, 403
BmrI ACTGGG 1 cut(s) 370
BmsI GCATC 1 cut(s) 213
BmuI ACTGGG 1 cut(s) 370
BpiI GAAGAC 1 cut(s) 136
BsaHI GRCGYC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 168
Bse1I ACTGG 2 cut(s) 370, 376
BseDI CCNNGG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 2 cut(s) 370, 376
BseRI GAGGAG 1 cut(s) 108
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 229
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 3 cut(s) 107, 275, 401
BsiEI CGRYCG 1 cut(s) 108
BsiSI CCGG 2 cut(s) 227, 381
BslFI GGGAC 2 cut(s) 350, 358
BsmAI GTCTC 2 cut(s) 6, 350
BsmFI GGGAC 2 cut(s) 350, 358
BsnI GGCC 3 cut(s) 107, 275, 401
Bsp143I GATC 2 cut(s) 211, 366
Bsp19I CCATGG 1 cut(s) 168
BspACI CCGC 7 cut(s) 108, 198, 280, 314, 317, 350, 402
BspANI GGCC 3 cut(s) 107, 275, 401
BspCNI CTCAG 1 cut(s) 346
BspMAI CTGCAG 1 cut(s) 219
BspPI GGATC 2 cut(s) 219, 361
BsrI ACTGG 2 cut(s) 370, 376
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 2 cut(s) 211, 366
BssNI GRCGYC 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 264
BstACI GRCGYC 1 cut(s) 327
BstAPI GCANNNNNTGC 1 cut(s) 223
BstC8I GCNNGC 2 cut(s) 196, 277
BstDEI CTNAG 2 cut(s) 297, 354
BstDSI CCRYGG 1 cut(s) 168
BstKTI GATC 2 cut(s) 214, 369
BstMAI GTCTC 2 cut(s) 6, 350
BstMBI GATC 2 cut(s) 211, 366
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BstZI CGGCCG 1 cut(s) 105
BsuRI GGCC 3 cut(s) 107, 275, 401
BtgI CCRYGG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 161, 210
Cac8I GCNNGC 2 cut(s) 196, 277
CseI GACGC 1 cut(s) 335
CviAII CATG 1 cut(s) 169
CviJI RGCY 5 cut(s) 107, 194, 242, 275, 401
CviKI_1 RGCY 5 cut(s) 107, 194, 242, 275, 401
DdeI CTNAG 2 cut(s) 297, 354
DpnI GATC 2 cut(s) 213, 368
DpnII GATC 2 cut(s) 211, 366
EaeI YGGCCR 2 cut(s) 105, 399
EagI CGGCCG 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
EciI GGCGGA 2 cut(s) 332, 339
EclXI CGGCCG 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 168
Eco147I AGGCCT 1 cut(s) 275
Eco52I CGGCCG 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 320
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 1 cut(s) 172
FaiI YATR 2 cut(s) 170, 239
FaqI GGGAC 2 cut(s) 350, 358
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 5 cut(s) 108, 218, 280, 315, 402
Fsp4HI GCNGC 5 cut(s) 108, 218, 280, 315, 402
GluI GCNGC 5 cut(s) 108, 218, 280, 315, 402
HaeIII GGCC 3 cut(s) 107, 275, 401
HapII CCGG 2 cut(s) 227, 381
HgaI GACGC 1 cut(s) 335
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 1 cut(s) 172
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HinfI GANTC 2 cut(s) 262, 386
HpaII CCGG 2 cut(s) 227, 381
Hpy166II GTNNAC 1 cut(s) 258
Hpy188III TCNNGA 2 cut(s) 266, 390
Hpy8I GTNNAC 1 cut(s) 258
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 2 cut(s) 175, 356
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 2 cut(s) 217, 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 2 cut(s) 297, 354
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 1 cut(s) 172
Kzo9I GATC 2 cut(s) 211, 366
LmnI GCTCC 1 cut(s) 172
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 159
MalI GATC 2 cut(s) 213, 368
MboI GATC 2 cut(s) 211, 366
MboII GAAGA 4 cut(s) 136, 139, 190, 281
MflI RGATCY 1 cut(s) 211
MluCI AATT 1 cut(s) 320
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 6 cut(s) 66, 129, 161, 184, 223, 265
MspI CCGG 2 cut(s) 227, 381
MwoI GCNNNNNNNGC 1 cut(s) 223
NcoI CCATGG 1 cut(s) 168
NdeII GATC 2 cut(s) 211, 366
NlaIII CATG 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 159
PceI AGGCCT 1 cut(s) 275
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 5 cut(s) 109, 219, 281, 316, 403
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PstI CTGCAG 1 cut(s) 219
PsuI RGATCY 1 cut(s) 211
SatI GCNGC 5 cut(s) 108, 218, 280, 315, 402
Sau3AI GATC 2 cut(s) 211, 366
SchI GAGTC 1 cut(s) 256
SetI ASST 1 cut(s) 58
SfaNI GCATC 1 cut(s) 213
SfcI CTRYAG 1 cut(s) 215
Sse9I AATT 1 cut(s) 320
SseBI AGGCCT 1 cut(s) 275
SsiI CCGC 7 cut(s) 108, 198, 280, 314, 317, 350, 402
StuI AGGCCT 1 cut(s) 275
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 324
TasI AATT 1 cut(s) 320
TauI GCSGC 4 cut(s) 110, 282, 317, 404
TfiI GAWTC 1 cut(s) 386
TscAI CASTG 2 cut(s) 168, 210
TseFI GTSAC 1 cut(s) 159
TseI GCWGC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 159
TspRI CASTG 2 cut(s) 168, 210
XapI RAATTY 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.