Rorug02G0626500

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000189
Physical Location & Seq
Reverse (-)
74234662 .. 74235238
577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0626500.1

Sequence Viewer

Length: 405 bp
ATGAGGATACCAAAGCGGGTTCTCCCCAGGCAAAATGATATCCCTATTTCCTATGCCTCTGAAGCAAATGAGATTATTGCATCTTCCCCTGCCATACATAATCTGTTTAAGAAATGGTTGGGAATGCTCCAAACGCAATCATCAGGTGAAGTAGTAGACGGGATTTTGGGAGAAGAACCTCCTCAAAAGATACCCTTGCTTATCTTCATCCCCTCGTACCTGGTACTGAATATACTTTATGGCGCCGAAGTTTCAAAAGAGTTTACTCCTTTGTGGGTTCTCGGACCCTTCATTGCAGCTCTCTACATCAAGATGCTTCAGTGGTTGTGTGCACTCTATGTTTTCAGCTTCAAGCAGACTGTTAAAGTAATCAAAAACTTGCCCACTTATTACCTGGTGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

134

Amino Acids

15.18

Weight (kDa)

9.01

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 156
AciI CCGC 1 cut(s) 16
AcuI CTGAAG 2 cut(s) 81, 302
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 2 cut(s) 218, 225
AgsI TTSAA 2 cut(s) 255, 352
AjnI CCWGG 3 cut(s) 26, 219, 393
AluBI AGCT 2 cut(s) 299, 348
AluI AGCT 2 cut(s) 299, 348
Alw21I GWGCWC 1 cut(s) 334
Alw44I GTGCAC 1 cut(s) 330
ApaLI GTGCAC 1 cut(s) 330
ApeKI GCWGC 1 cut(s) 296
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 158
AvaII GGWCC 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 1 cut(s) 308
BciT130I CCWGG 3 cut(s) 28, 221, 395
BfoI RGCGCY 1 cut(s) 246
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme1390I CCNGG 3 cut(s) 28, 221, 395
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 244, 286
BmrFI CCNGG 3 cut(s) 28, 221, 395
BmsI GCATC 2 cut(s) 89, 303
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 3 cut(s) 28, 221, 395
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 207
BseMI GCAATG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 334
BseXI GCAGC 1 cut(s) 308
BshNI GGYRCC 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 334
BsmI GAATGC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 334
BspACI CCGC 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 244, 286
BspT107I GGYRCC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 26
BssNI GRCGYC 1 cut(s) 243
Bst2UI CCWGG 3 cut(s) 28, 221, 395
Bst4CI ACNGT 1 cut(s) 361
BstACI GRCGYC 1 cut(s) 243
BstF5I GGATG 1 cut(s) 207
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstMWI GCNNNNNNNGC 2 cut(s) 62, 133
BstNI CCWGG 3 cut(s) 28, 221, 395
BstSCI CCNGG 3 cut(s) 26, 219, 393
BstSLI GKGCMC 1 cut(s) 334
BstV1I GCAGC 1 cut(s) 308
BtsCI GGATG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 326
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 284
CsiI ACCWGGT 2 cut(s) 219, 393
Csp6I GTAC 2 cut(s) 217, 224
CviJI RGCY 2 cut(s) 299, 348
CviKI_1 RGCY 2 cut(s) 299, 348
CviQI GTAC 2 cut(s) 217, 224
DinI GGCGCC 1 cut(s) 244
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 284
Eco57I CTGAAG 2 cut(s) 81, 302
EcoRII CCWGG 3 cut(s) 26, 219, 393
EcoRV GATATC 1 cut(s) 40
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
FaiI YATR 6 cut(s) 54, 95, 99, 233, 240, 339
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FauI CCCGC 1 cut(s) 9
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 297
GlaI GCGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 297
HaeII RGCGCY 1 cut(s) 246
HhaI GCGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 243
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 3 cut(s) 157, 264, 332
Hpy188I TCNGA 2 cut(s) 61, 284
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 3 cut(s) 157, 264, 332
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4V TGCA 3 cut(s) 80, 296, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 133
Hsp92I GRCGYC 1 cut(s) 243
HspAI GCGC 1 cut(s) 243
KasI GGCGCC 1 cut(s) 242
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 7 cut(s) 13, 40, 102, 129, 206, 233, 380
Lsp1109I GCAGC 1 cut(s) 308
LweI GCATC 2 cut(s) 89, 303
MabI ACCWGGT 2 cut(s) 219, 393
MboII GAAGA 3 cut(s) 75, 185, 196
MhlI GDGCHC 1 cut(s) 334
Mly113I GGCGCC 1 cut(s) 243
MnlI CCTC 4 cut(s) 67, 189, 192, 223
MseI TTAA 2 cut(s) 108, 363
MslI CAYNNNNRTG 1 cut(s) 311
MspR9I CCNGG 3 cut(s) 28, 221, 395
Mva1269I GAATGC 1 cut(s) 129
MvaI CCWGG 3 cut(s) 28, 221, 395
MwoI GCNNNNNNNGC 2 cut(s) 62, 133
NarI GGCGCC 1 cut(s) 243
NlaIV GGNNCC 2 cut(s) 244, 286
PctI GAATGC 1 cut(s) 129
PkrI GCNGC 1 cut(s) 298
PluTI GGCGCC 1 cut(s) 246
Psp6I CCWGG 3 cut(s) 26, 219, 393
PspGI CCWGG 3 cut(s) 26, 219, 393
PspN4I GGNNCC 2 cut(s) 244, 286
PspPI GGNCC 1 cut(s) 284
RsaI GTAC 2 cut(s) 218, 225
RsaNI GTAC 2 cut(s) 217, 224
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 2 cut(s) 108, 363
SatI GCNGC 1 cut(s) 297
Sau96I GGNCC 1 cut(s) 284
ScrFI CCNGG 3 cut(s) 28, 221, 395
SduI GDGCHC 1 cut(s) 334
SetI ASST 6 cut(s) 148, 181, 222, 301, 350, 396
SexAI ACCWGGT 2 cut(s) 219, 393
SfaNI GCATC 2 cut(s) 89, 303
SfoI GGCGCC 1 cut(s) 244
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 311
SsiI CCGC 1 cut(s) 16
SspDI GGCGCC 1 cut(s) 242
StyD4I CCNGG 3 cut(s) 26, 219, 393
TaaI ACNGT 1 cut(s) 361
Tru1I TTAA 2 cut(s) 108, 363
Tru9I TTAA 2 cut(s) 108, 363
TscAI CASTG 1 cut(s) 326
TseI GCWGC 1 cut(s) 296
TspDTI ATGAA 2 cut(s) 196, 280
TspRI CASTG 1 cut(s) 326
VneI GTGCAC 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 284
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.