FvH4_1g04390

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000189
Physical Location & Seq
Reverse (-)
2347171 .. 2347968
798 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04390.t1

Sequence Viewer

Length: 798 bp
ATGGCCCCCAAAAGATCACTTGACGTCACCGGAGCCACCGTTAGCGAAGAACAAAGGGGGCGTCTTACGTCGGAGAAGCAGCTAGACTTGCAAGACTTGCCGGAAGGATGCATATCCCACGTTATCTCGTTAACAAGTCCTCCAGACGCATGCAGGCTCTCCTTGCTTTCTAGGGTTATCAAGTCAGCCGCAGAATCCGACGCAGTCTGGGACAAGTTCATCCCACCTGATACACACGCGATCCTTTCCCAGTCCAACTCCCTTCCCTTTTCAAAATCCAAGAAGGAGCTCTACATGACTCTCTGCGACAACCCCGTCCTCATCGAAGACGGAAACATGAGCTTTTCATTGGACAAATGGAGCGGGAAGAAGTGCTATATGATAGCTGCAAAGCGCCTCAGGATTGCTTGGGATAATACTGCTCCATATTGGAGACGAAAATCTCTGACTAGTAATCAGTCCAGGTTTAAGGATGCGTCGGAGCAATATGGTATGGTAGGTTGGTTTGAAATCCGTGGGAGAATCGAAACGCGCATGCTCTCACCATGCACGACGTATAAAGCTTATCTGGTGTACAATGCTAGTAGTGAAGTCTTTAATTCATATCATCTAGGGCGGCCTGTGGTGGTCACAGTTGGTGCAAGAGCTTATGGCTTTGATTATGAATGTCCTGGTTTGCAGGAACAAACAGCAGGCATGAAGCGCACTTCGTTTCTGTCACGCAGAAGAGATTTAGAAGCTGAGATCGCTCATATGGAAAGAAGGTTCGGAAGAAGTTTTCAAAACCAAGGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

266

Amino Acids

30.1

Weight (kDa)

9.19

Isoelectric Point (pI)

65.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 123 - 214 8.9e-20 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 314
AatII GACGTC 1 cut(s) 27
AccBSI CCGCTC 1 cut(s) 363
AccII CGCG 2 cut(s) 239, 532
AciI CCGC 3 cut(s) 189, 363, 616
AclWI GGATC 1 cut(s) 235
AcyI GRCGYC 2 cut(s) 24, 61
AfaI GTAC 1 cut(s) 575
AgsI TTSAA 3 cut(s) 273, 509, 782
AhlI ACTAGT 1 cut(s) 449
AjnI CCWGG 2 cut(s) 461, 670
AloI GAACNNNNNNTCC 2 cut(s) 749, 781
AluBI AGCT 7 cut(s) 82, 289, 342, 386, 563, 647, 740
AluI AGCT 7 cut(s) 82, 289, 342, 386, 563, 647, 740
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 427
AlwI GGATC 1 cut(s) 235
AoxI GGCC 2 cut(s) 3, 617
ApeKI GCWGC 2 cut(s) 79, 386
ArsI GACNNNNNNTTYG 2 cut(s) 46, 78
AspLEI GCGC 3 cut(s) 396, 534, 705
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 19, 534
AxyI CCTNAGG 1 cut(s) 398
BanII GRGCYC 1 cut(s) 291
BarI GAAGNNNNNNTAC 2 cut(s) 275, 307
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 91, 373
BciT130I CCWGG 2 cut(s) 463, 672
BcoDI GTCTC 1 cut(s) 427
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 5 cut(s) 83, 171, 450, 582, 611
BfoI RGCGCY 1 cut(s) 397
BisI GCNGC 4 cut(s) 80, 189, 387, 617
BlsI GCNGC 4 cut(s) 81, 190, 388, 618
Bme1390I CCNGG 2 cut(s) 463, 672
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 6, 34
BmrFI CCNGG 2 cut(s) 463, 672
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 2 cut(s) 98, 463
BmuI ACTGGG 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 333
BpmI CTGGAG 1 cut(s) 126
BsaBI GATNNNNATC 1 cut(s) 112
BsaHI GRCGYC 2 cut(s) 24, 61
BsaJI CCNNGG 2 cut(s) 514, 787
BsaWI WCCGGW 1 cut(s) 29
BsaXI ACNNNNNCTCC 4 cut(s) 24, 54, 124, 154
Bse1I ACTGG 1 cut(s) 250
Bse21I CCTNAGG 1 cut(s) 398
Bse8I GATNNNNATC 1 cut(s) 112
BseBI CCWGG 2 cut(s) 463, 672
BseDI CCNNGG 2 cut(s) 514, 787
BseGI GGATG 3 cut(s) 113, 219, 478
BseJI GATNNNNATC 1 cut(s) 112
BseMII CTCAG 2 cut(s) 412, 732
BseNI ACTGG 1 cut(s) 250
BseXI GCAGC 2 cut(s) 91, 373
Bsh1236I CGCG 2 cut(s) 239, 532
BshFI GGCC 2 cut(s) 5, 619
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 2 cut(s) 30, 101
BslFI GGGAC 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 427
BsmBI CGTCTC 1 cut(s) 427
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 2 cut(s) 5, 619
Bsp1286I GDGCHC 1 cut(s) 291
Bsp1407I TGTACA 1 cut(s) 573
Bsp143I GATC 3 cut(s) 14, 240, 744
BspACI CCGC 3 cut(s) 189, 363, 616
BspANI GGCC 2 cut(s) 5, 619
BspCNI CTCAG 2 cut(s) 411, 733
BspFNI CGCG 2 cut(s) 239, 532
BspLI GGNNCC 2 cut(s) 6, 34
BspPI GGATC 1 cut(s) 235
BsrBI CCGCTC 1 cut(s) 363
BsrGI TGTACA 1 cut(s) 573
BsrI ACTGG 1 cut(s) 250
BssECI CCNNGG 2 cut(s) 514, 787
BssMI GATC 3 cut(s) 14, 240, 744
BssNI GRCGYC 2 cut(s) 24, 61
BssT1I CCWWGG 1 cut(s) 787
Bst2UI CCWGG 2 cut(s) 463, 672
Bst4CI ACNGT 2 cut(s) 40, 634
Bst6I CTCTTC 1 cut(s) 721
BstACI GRCGYC 2 cut(s) 24, 61
BstAPI GCANNNNNTGC 1 cut(s) 97
BstAUI TGTACA 1 cut(s) 573
BstC8I GCNNGC 4 cut(s) 151, 155, 536, 694
BstDEI CTNAG 2 cut(s) 398, 741
BstDSI CCRYGG 1 cut(s) 514
BstF5I GGATG 3 cut(s) 113, 219, 478
BstFNI CGCG 2 cut(s) 239, 532
BstH2I RGCGCY 1 cut(s) 397
BstHHI GCGC 3 cut(s) 396, 534, 705
BstKTI GATC 3 cut(s) 17, 243, 747
BstMAI GTCTC 1 cut(s) 427
BstMBI GATC 3 cut(s) 14, 240, 744
BstMWI GCNNNNNNNGC 5 cut(s) 88, 97, 163, 702, 746
BstNI CCWGG 2 cut(s) 463, 672
BstNSI RCATGY 2 cut(s) 153, 538
BstSCI CCNGG 2 cut(s) 461, 670
BstUI CGCG 2 cut(s) 239, 532
BstV1I GCAGC 2 cut(s) 91, 373
BstV2I GAAGAC 1 cut(s) 333
Bsu36I CCTNAGG 1 cut(s) 398
BsuRI GGCC 2 cut(s) 5, 619
BtgI CCRYGG 1 cut(s) 514
BtsCI GGATG 3 cut(s) 113, 219, 478
Cac8I GCNNGC 4 cut(s) 151, 155, 536, 694
CfoI GCGC 3 cut(s) 396, 534, 705
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 4 cut(s) 50, 155, 209, 465
Csp6I GTAC 1 cut(s) 574
CviAII CATG 6 cut(s) 150, 295, 337, 535, 546, 697
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 2 cut(s) 398, 741
DpnI GATC 3 cut(s) 16, 242, 746
DpnII GATC 3 cut(s) 14, 240, 744
DrdI GACNNNNNNGTC 1 cut(s) 314
DseDI GACNNNNNNGTC 1 cut(s) 314
Eam1104I CTCTTC 1 cut(s) 721
EarI CTCTTC 1 cut(s) 721
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 787
Eco24I GRGCYC 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 289
Eco81I CCTNAGG 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 289
EcoRII CCWGG 2 cut(s) 461, 670
EcoT14I CCWWGG 1 cut(s) 787
EcoT22I ATGCAT 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 787
Esp3I CGTCTC 1 cut(s) 427
FaeI CATG 6 cut(s) 153, 298, 340, 538, 549, 700
FaqI GGGAC 1 cut(s) 224
FatI CATG 6 cut(s) 149, 294, 336, 534, 545, 696
FauI CCCGC 1 cut(s) 356
FauNDI CATATG 1 cut(s) 753
Fnu4HI GCNGC 4 cut(s) 80, 189, 387, 617
FokI GGATG 3 cut(s) 120, 206, 485
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 4 cut(s) 80, 189, 387, 617
FspBI CTAG 5 cut(s) 83, 171, 450, 582, 611
GlaI GCGC 3 cut(s) 395, 533, 704
GluI GCNGC 4 cut(s) 80, 189, 387, 617
GsuI CTGGAG 1 cut(s) 126
HaeII RGCGCY 1 cut(s) 397
HaeIII GGCC 2 cut(s) 5, 619
HapII CCGG 2 cut(s) 30, 101
HgaI GACGC 4 cut(s) 50, 155, 209, 465
HhaI GCGC 3 cut(s) 396, 534, 705
Hin1I GRCGYC 2 cut(s) 24, 61
Hin1II CATG 6 cut(s) 153, 298, 340, 538, 549, 700
Hin6I GCGC 3 cut(s) 394, 532, 703
HinP1I GCGC 3 cut(s) 394, 532, 703
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 3 cut(s) 194, 298, 522
HpaI GTTAAC 1 cut(s) 132
HpaII CCGG 2 cut(s) 30, 101
HphI GGTGA 2 cut(s) 19, 534
Hpy166II GTNNAC 2 cut(s) 132, 574
Hpy188I TCNGA 5 cut(s) 73, 199, 447, 481, 770
Hpy188III TCNNGA 2 cut(s) 143, 400
Hpy8I GTNNAC 2 cut(s) 132, 574
Hpy99I CGWCG 4 cut(s) 73, 203, 481, 556
HpyAV CCTTC 4 cut(s) 98, 272, 277, 756
HpyCH4III ACNGT 2 cut(s) 40, 634
HpyCH4IV ACGT 4 cut(s) 24, 68, 120, 554
HpyCH4V TGCA 7 cut(s) 91, 111, 153, 389, 549, 641, 679
HpyF10VI GCNNNNNNNGC 5 cut(s) 88, 97, 163, 702, 746
HpyF3I CTNAG 2 cut(s) 398, 741
HpySE526I ACGT 4 cut(s) 24, 68, 120, 554
Hsp92I GRCGYC 2 cut(s) 24, 61
Hsp92II CATG 6 cut(s) 153, 298, 340, 538, 549, 700
HspAI GCGC 3 cut(s) 394, 532, 703
KspAI GTTAAC 1 cut(s) 132
Kzo9I GATC 3 cut(s) 14, 240, 744
LmnI GCTCC 5 cut(s) 32, 286, 360, 427, 481
Lsp1109I GCAGC 2 cut(s) 91, 373
LweI GCATC 2 cut(s) 98, 463
MaeI CTAG 5 cut(s) 83, 171, 450, 582, 611
MaeII ACGT 4 cut(s) 24, 68, 120, 554
MaeIII GTNAC 3 cut(s) 25, 628, 717
MalI GATC 3 cut(s) 16, 242, 746
MbiI CCGCTC 1 cut(s) 363
MboI GATC 3 cut(s) 14, 240, 744
MboII GAAGA 5 cut(s) 59, 338, 379, 738, 783
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 1 cut(s) 598
MlyI GAGTC 1 cut(s) 292
MmeI TCCRAC 4 cut(s) 51, 222, 279, 459
MnlI CCTC 3 cut(s) 150, 329, 407
Mph1103I ATGCAT 1 cut(s) 113
MseI TTAA 3 cut(s) 131, 468, 597
MspI CCGG 2 cut(s) 30, 101
MspR9I CCNGG 2 cut(s) 463, 672
MvaI CCWGG 2 cut(s) 463, 672
MvnI CGCG 2 cut(s) 239, 532
MwoI GCNNNNNNNGC 5 cut(s) 88, 97, 163, 702, 746
NdeI CATATG 1 cut(s) 753
NdeII GATC 3 cut(s) 14, 240, 744
NlaIII CATG 6 cut(s) 153, 298, 340, 538, 549, 700
NlaIV GGNNCC 2 cut(s) 6, 34
NmuCI GTSAC 3 cut(s) 25, 628, 717
NsiI ATGCAT 1 cut(s) 113
NspI RCATGY 2 cut(s) 153, 538
PaeI GCATGC 2 cut(s) 153, 538
PfeI GAWTC 2 cut(s) 194, 522
PflFI GACNNNGTC 1 cut(s) 203
PkrI GCNGC 4 cut(s) 81, 190, 388, 618
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 2 cut(s) 461, 670
PspGI CCWGG 2 cut(s) 461, 670
PspN4I GGNNCC 2 cut(s) 6, 34
PspPI GGNCC 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 203
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 3 cut(s) 131, 468, 597
SatI GCNGC 4 cut(s) 80, 189, 387, 617
Sau3AI GATC 3 cut(s) 14, 240, 744
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 292
ScrFI CCNGG 2 cut(s) 463, 672
SduI GDGCHC 1 cut(s) 291
SfaNI GCATC 2 cut(s) 98, 463
SpeI ACTAGT 1 cut(s) 449
SphI GCATGC 2 cut(s) 153, 538
Sse9I AATT 1 cut(s) 598
SsiI CCGC 3 cut(s) 189, 363, 616
SspMI CTAG 5 cut(s) 83, 171, 450, 582, 611
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 461, 670
StyI CCWWGG 1 cut(s) 787
TaaI ACNGT 2 cut(s) 40, 634
TaiI ACGT 4 cut(s) 27, 71, 123, 557
TaqI TCGA 2 cut(s) 324, 525
TasI AATT 1 cut(s) 598
TatI WGTACW 1 cut(s) 573
TauI GCSGC 2 cut(s) 191, 619
TfiI GAWTC 2 cut(s) 194, 522
Tru1I TTAA 3 cut(s) 131, 468, 597
Tru9I TTAA 3 cut(s) 131, 468, 597
TseFI GTSAC 3 cut(s) 25, 628, 717
TseI GCWGC 2 cut(s) 79, 386
Tsp45I GTSAC 3 cut(s) 25, 628, 717
TspDTI ATGAA 5 cut(s) 208, 336, 591, 678, 713
TspGWI ACGGA 2 cut(s) 345, 503
Tth111I GACNNNGTC 1 cut(s) 203
XceI RCATGY 2 cut(s) 153, 538
XspI CTAG 5 cut(s) 83, 171, 450, 582, 611
ZraI GACGTC 1 cut(s) 25
Zsp2I ATGCAT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.