MD04G1236300.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000189
Physical Location & Seq
Forward (+)
31527526 .. 31529667
2142 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1236300.v1.1.491

Sequence Viewer

Length: 987 bp
ATGTTCAAGTTCTTCTTAGGCGGTGGCGGAAACCAGGAGAAAACAGATGATGTCGGTGGCGGCGGAGGCGACCCCATGGATCTGCAGGCCTTGCCGGAGGGATGCATAGCCACCGTTGTCTCGCTGACCACGCCTCGGGACGCGGGCACAATGTCGTCGGTTTCGAGGAGTTTCAGGTCGGCCGCCGAATCCGACGCTGTTTGGGACAAGTTCCTTCCCCCCGAGATCCACACTATCATGTCCTCCTCGTCGCCCTCACAGCCGCCGCTTGTGTCTCCCTCCTTCACCTCCAAAACCAAGAAGGAGCTTTTCCTCGCTGTGTGCGACAACCCTGTTCTCATCGAAGAGGGCAAGTTGAGCTTTTCGCTGGACAAATGGAGTGGGAAGAAATGCTATATGATCGCTGCAAGGGCCCTTTCGATTGTTTGGGCTGACACTCCTCACTACTGGAGATGGATTTCTGTCCCCGACTCGAGGTTTGAGGAGGTGGCGGAGCTTATTAGTGTGTGCTGGCTTGAAATCCGTGGCAAAATTGGGACACGGATGCTGTCCCCATCCACCCTTTACAAAGCTTTTCTTGTATTCAAGTCAATTGCAGGGGCTCATGGATTTGAGAACCAACCTGTGGAGGTCACAGTGGGTTTAATTGGGCAGGAGCCCACGAAACATGTGGTGTTTCTGGACGTGCAGAGAGGCCAAACCCAAGGCCAGGGCTACCACGTTGCCGGGCCTTGGCATATTGGCCTCTTCAACCGCAGACACATTCCCGGCCTCCAGTCGTTCCAGTCGTTCCAGCCAAGGGAGATCAACGAGGCCCAGTACCCGAAAGAGCGGAACGACGGGTGGCTGGAGATAGAGATGGGGGAGTTCTTCTGCGAAGGGGGTGAAGGTGGGGAGTTGGAGATGACTTGCATGGAGGTTAGGGGTGGACAGTGGAAGGGTGGCCTCATTTTTCAAGGGATTGAGGTCAGGCCTAAAAGGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

329

Amino Acids

36.34

Weight (kDa)

5.73

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 129 - 325 6.8e-59 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 625
AccBSI CCGCTC 1 cut(s) 832
AccII CGCG 1 cut(s) 143
AclWI GGATC 2 cut(s) 87, 220
AcoI YGGCCR 1 cut(s) 180
AfaI GTAC 1 cut(s) 821
AfiI CCNNNNNNNGG 6 cut(s) 135, 474, 625, 709, 732, 799
AflIII ACRYGT 1 cut(s) 667
AgsI TTSAA 5 cut(s) 7, 518, 586, 751, 956
AjiI CACGTC 1 cut(s) 685
AjnI CCWGG 2 cut(s) 33, 708
AluBI AGCT 4 cut(s) 307, 360, 496, 572
AluI AGCT 4 cut(s) 307, 360, 496, 572
Alw26I GTCTC 2 cut(s) 124, 279
AlwI GGATC 2 cut(s) 87, 220
Ama87I CYCGRG 3 cut(s) 135, 221, 472
ApaI GGGCCC 1 cut(s) 415
ApeKI GCWGC 1 cut(s) 404
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
AspS9I GGNCC 4 cut(s) 411, 412, 728, 814
AsuC2I CCSGG 2 cut(s) 727, 768
AsuHPI GGTGA 2 cut(s) 277, 896
AvaI CYCGRG 3 cut(s) 135, 221, 472
BaeGI GKGCMC 2 cut(s) 149, 415
BanII GRGCYC 3 cut(s) 415, 604, 660
BbvI GCAGC 1 cut(s) 391
BccI CCATC 3 cut(s) 447, 562, 853
BciT130I CCWGG 2 cut(s) 35, 710
BcnI CCSGG 2 cut(s) 727, 768
BcoDI GTCTC 2 cut(s) 124, 279
BfmI CTRYAG 1 cut(s) 83
BisI GCNGC 5 cut(s) 61, 183, 263, 266, 405
BlsI GCNGC 5 cut(s) 62, 184, 264, 267, 406
Bme1390I CCNGG 4 cut(s) 35, 710, 727, 768
BmeT110I CYCGRG 3 cut(s) 135, 221, 472
BmgBI CACGTC 1 cut(s) 685
BmgT120I GGNCC 4 cut(s) 411, 412, 728, 814
BmiI GGNNCC 2 cut(s) 413, 657
BmrFI CCNGG 4 cut(s) 35, 710, 727, 768
BmrI ACTGGG 1 cut(s) 811
BmsI GCATC 2 cut(s) 92, 534
BmuI ACTGGG 1 cut(s) 811
BpmI CTGGAG 3 cut(s) 469, 758, 869
BpuMI CCSGG 2 cut(s) 727, 768
BsaJI CCNNGG 7 cut(s) 75, 134, 523, 703, 709, 731, 797
Bsc4I CCNNNNNNNGG 6 cut(s) 135, 474, 625, 709, 732, 799
Bse1I ACTGG 4 cut(s) 452, 775, 784, 817
BseBI CCWGG 2 cut(s) 35, 710
BseDI CCNNGG 7 cut(s) 75, 134, 523, 703, 709, 731, 797
BseGI GGATG 4 cut(s) 107, 549, 554, 987
BseLI CCNNNNNNNGG 6 cut(s) 135, 474, 625, 709, 732, 799
BseNI ACTGG 4 cut(s) 452, 775, 784, 817
BseRI GAGGAG 4 cut(s) 181, 235, 429, 497
BseSI GKGCMC 2 cut(s) 149, 415
BseX3I CGGCCG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 391
BsgI GTGCAG 1 cut(s) 707
Bsh1236I CGCG 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 183
BsiEI CGRYCG 1 cut(s) 183
BsiHKCI CYCGRG 3 cut(s) 135, 221, 472
BsiSI CCGG 3 cut(s) 95, 726, 768
BslFI GGGAC 5 cut(s) 152, 218, 449, 535, 550
BslI CCNNNNNNNGG 6 cut(s) 135, 474, 625, 709, 732, 799
BsmAI GTCTC 2 cut(s) 124, 279
BsmFI GGGAC 5 cut(s) 152, 218, 449, 535, 550
BsoBI CYCGRG 3 cut(s) 135, 221, 472
Bsp120I GGGCCC 1 cut(s) 411
Bsp1286I GDGCHC 4 cut(s) 149, 415, 604, 660
Bsp143I GATC 4 cut(s) 79, 225, 399, 804
Bsp19I CCATGG 1 cut(s) 75
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 2 cut(s) 413, 657
BspMAI CTGCAG 1 cut(s) 87
BspPI GGATC 2 cut(s) 87, 220
BsrBI CCGCTC 1 cut(s) 832
BsrI ACTGG 4 cut(s) 452, 775, 784, 817
BssECI CCNNGG 7 cut(s) 75, 134, 523, 703, 709, 731, 797
BssMI GATC 4 cut(s) 79, 225, 399, 804
BssT1I CCWWGG 4 cut(s) 75, 703, 731, 797
Bst2UI CCWGG 2 cut(s) 35, 710
Bst4CI ACNGT 3 cut(s) 115, 637, 933
Bst6I CTCTTC 2 cut(s) 339, 752
BstAPI GCANNNNNTGC 1 cut(s) 91
BstC8I GCNNGC 3 cut(s) 87, 145, 512
BstDEI CTNAG 1 cut(s) 16
BstDSI CCRYGG 2 cut(s) 75, 523
BstF5I GGATG 4 cut(s) 107, 549, 554, 987
BstFNI CGCG 1 cut(s) 143
BstKTI GATC 4 cut(s) 82, 228, 402, 807
BstMAI GTCTC 2 cut(s) 124, 279
BstMBI GATC 4 cut(s) 79, 225, 399, 804
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 6 cut(s) 66, 91, 130, 259, 357, 410
BstNI CCWGG 2 cut(s) 35, 710
BstNSI RCATGY 1 cut(s) 671
BstSCI CCNGG 4 cut(s) 33, 708, 725, 766
BstSFI CTRYAG 1 cut(s) 83
BstSLI GKGCMC 2 cut(s) 149, 415
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 391
BstX2I RGATCY 2 cut(s) 79, 225
BstYI RGATCY 2 cut(s) 79, 225
BstZI CGGCCG 1 cut(s) 180
BtgI CCRYGG 2 cut(s) 75, 523
BtrI CACGTC 1 cut(s) 685
BtsCI GGATG 4 cut(s) 107, 549, 554, 987
BtsIMutI CAGTG 2 cut(s) 642, 938
Cac8I GCNNGC 3 cut(s) 87, 145, 512
Cfr13I GGNCC 4 cut(s) 411, 412, 728, 814
CseI GACGC 2 cut(s) 149, 203
Csp6I GTAC 1 cut(s) 820
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 5 cut(s) 76, 238, 605, 668, 913
CviQI GTAC 1 cut(s) 820
DdeI CTNAG 1 cut(s) 16
DpnI GATC 4 cut(s) 81, 227, 401, 806
DpnII GATC 4 cut(s) 79, 225, 399, 804
EaeI YGGCCR 1 cut(s) 180
EagI CGGCCG 1 cut(s) 180
Eam1104I CTCTTC 2 cut(s) 339, 752
EarI CTCTTC 2 cut(s) 339, 752
EciI GGCGGA 3 cut(s) 42, 78, 506
EclXI CGGCCG 1 cut(s) 180
Eco130I CCWWGG 4 cut(s) 75, 703, 731, 797
Eco147I AGGCCT 2 cut(s) 89, 973
Eco24I GRGCYC 3 cut(s) 415, 604, 660
Eco52I CGGCCG 1 cut(s) 180
Eco88I CYCGRG 3 cut(s) 135, 221, 472
EcoO109I RGGNCCY 2 cut(s) 411, 412
EcoRII CCWGG 2 cut(s) 33, 708
EcoT14I CCWWGG 4 cut(s) 75, 703, 731, 797
EcoT22I ATGCAT 1 cut(s) 107
EcoT38I GRGCYC 3 cut(s) 415, 604, 660
ErhI CCWWGG 4 cut(s) 75, 703, 731, 797
FaeI CATG 5 cut(s) 79, 241, 608, 671, 916
FaiI YATR 9 cut(s) 77, 107, 239, 396, 398, 606, 669, 738, 914
FalI AAGNNNNNCTT 5 cut(s) 31, 344, 376, 561, 593
FaqI GGGAC 5 cut(s) 152, 218, 449, 535, 550
FatI CATG 5 cut(s) 75, 237, 604, 667, 912
FauI CCCGC 1 cut(s) 136
Fnu4HI GCNGC 5 cut(s) 61, 183, 263, 266, 405
FokI GGATG 3 cut(s) 114, 541, 556
FriOI GRGCYC 3 cut(s) 415, 604, 660
Fsp4HI GCNGC 5 cut(s) 61, 183, 263, 266, 405
GluI GCNGC 5 cut(s) 61, 183, 263, 266, 405
GsuI CTGGAG 3 cut(s) 469, 758, 869
HapII CCGG 3 cut(s) 95, 726, 768
HgaI GACGC 2 cut(s) 149, 203
Hin1II CATG 5 cut(s) 79, 241, 608, 671, 916
HindIII AAGCTT 1 cut(s) 570
HinfI GANTC 2 cut(s) 188, 470
HpaII CCGG 3 cut(s) 95, 726, 768
HphI GGTGA 2 cut(s) 277, 896
Hpy166II GTNNAC 1 cut(s) 929
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 2 cut(s) 137, 680
Hpy8I GTNNAC 1 cut(s) 929
Hpy99I CGWCG 4 cut(s) 160, 197, 253, 842
HpyAV CCTTC 6 cut(s) 224, 292, 295, 872, 881, 931
HpyCH4III ACNGT 3 cut(s) 115, 637, 933
HpyCH4IV ACGT 2 cut(s) 684, 720
HpyCH4V TGCA 6 cut(s) 85, 105, 407, 596, 688, 912
HpyF10VI GCNNNNNNNGC 6 cut(s) 66, 91, 130, 259, 357, 410
HpyF3I CTNAG 1 cut(s) 16
HpySE526I ACGT 2 cut(s) 684, 720
Hsp92II CATG 5 cut(s) 79, 241, 608, 671, 916
Kzo9I GATC 4 cut(s) 79, 225, 399, 804
LmnI GCTCC 3 cut(s) 304, 493, 655
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 2 cut(s) 92, 534
MaeII ACGT 2 cut(s) 684, 720
MaeIII GTNAC 1 cut(s) 631
MalI GATC 4 cut(s) 81, 227, 401, 806
MbiI CCGCTC 1 cut(s) 832
MboI GATC 4 cut(s) 79, 225, 399, 804
MboII GAAGA 5 cut(s) 4, 356, 397, 739, 862
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 2 cut(s) 79, 225
MhlI GDGCHC 4 cut(s) 149, 415, 604, 660
MluCI AATT 3 cut(s) 531, 591, 645
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 2 cut(s) 216, 879
Mph1103I ATGCAT 1 cut(s) 107
MseI TTAA 1 cut(s) 644
MslI CAYNNNNRTG 1 cut(s) 236
MspI CCGG 3 cut(s) 95, 726, 768
MspR9I CCNGG 4 cut(s) 35, 710, 727, 768
MunI CAATTG 1 cut(s) 591
MvaI CCWGG 2 cut(s) 35, 710
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 6 cut(s) 66, 91, 130, 259, 357, 410
NciI CCSGG 2 cut(s) 727, 768
NcoI CCATGG 1 cut(s) 75
NdeII GATC 4 cut(s) 79, 225, 399, 804
NlaIII CATG 5 cut(s) 79, 241, 608, 671, 916
NlaIV GGNNCC 2 cut(s) 413, 657
NmuCI GTSAC 1 cut(s) 631
NsiI ATGCAT 1 cut(s) 107
NspI RCATGY 1 cut(s) 671
PaeR7I CTCGAG 1 cut(s) 472
PceI AGGCCT 2 cut(s) 89, 973
PciI ACATGT 1 cut(s) 667
PcsI WCGNNNNNNNCGW 3 cut(s) 161, 321, 785
PfeI GAWTC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 625
PkrI GCNGC 5 cut(s) 62, 184, 264, 267, 406
PleI GAGTC 1 cut(s) 464
PpsI GAGTC 1 cut(s) 464
PscI ACATGT 1 cut(s) 667
Psp6I CCWGG 2 cut(s) 33, 708
PspGI CCWGG 2 cut(s) 33, 708
PspN4I GGNNCC 2 cut(s) 413, 657
PspOMI GGGCCC 1 cut(s) 411
PspPI GGNCC 4 cut(s) 411, 412, 728, 814
PspXI VCTCGAGB 1 cut(s) 472
PstI CTGCAG 1 cut(s) 87
PsuI RGATCY 2 cut(s) 79, 225
RsaI GTAC 1 cut(s) 821
RsaNI GTAC 1 cut(s) 820
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 1 cut(s) 644
SatI GCNGC 5 cut(s) 61, 183, 263, 266, 405
Sau3AI GATC 4 cut(s) 79, 225, 399, 804
Sau96I GGNCC 4 cut(s) 411, 412, 728, 814
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 4 cut(s) 35, 710, 727, 768
SduI GDGCHC 4 cut(s) 149, 415, 604, 660
SfaNI GCATC 2 cut(s) 92, 534
SfcI CTRYAG 1 cut(s) 83
Sfr274I CTCGAG 1 cut(s) 472
SlaI CTCGAG 1 cut(s) 472
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
Sse9I AATT 3 cut(s) 531, 591, 645
SseBI AGGCCT 2 cut(s) 89, 973
StuI AGGCCT 2 cut(s) 89, 973
StyD4I CCNGG 4 cut(s) 33, 708, 725, 766
StyI CCWWGG 4 cut(s) 75, 703, 731, 797
TaaI ACNGT 3 cut(s) 115, 637, 933
TaiI ACGT 2 cut(s) 687, 723
TaqI TCGA 4 cut(s) 164, 342, 419, 473
TasI AATT 3 cut(s) 531, 591, 645
TauI GCSGC 4 cut(s) 63, 185, 265, 268
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 644
Tru9I TTAA 1 cut(s) 644
TscAI CASTG 2 cut(s) 642, 938
TseFI GTSAC 1 cut(s) 631
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 631
TspGWI ACGGA 2 cut(s) 512, 556
TspRI CASTG 2 cut(s) 642, 938
Van91I CCANNNNNTGG 1 cut(s) 625
XceI RCATGY 1 cut(s) 671
XcmI CCANNNNNNNNNTGG 1 cut(s) 667
XhoI CTCGAG 1 cut(s) 472
Zsp2I ATGCAT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.