Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000189

Physical Location & Seq

Genomic Coordinates Reverse (-)

31598707 .. 31599335

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1237700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCAAAAGAAGACAGTCGACGCCGGTGCATCAGGAGTAGGAGGAGGAGGAGAAGGAATCACCTGCGGGGGCTGCGGGACGCCGGTGTCGATGGTACTCGATGACGATCATCATCACGTTCACATGGATCTGCAGGAGTTGCCCGAAGGATGCATAGCTAACGTCGTCTCCTTAACGACGCCTCGAGACGCGTGCAGGTTTGAGGAGGTGCCTGAGCTTATAGTTGTTTGGTGGCTTGACATTCGTGGCAAAAATGATACACGGATTCTTTCCCCCTCCACTGTCAAGGTAGGACTTTTTGGGGAAGAAGAGACTAGTAGTAAGCGCATTGTGTTTCTGGGGAGACAGAACATTACCGGGAGACCCATGGAAATCGATGAAACTCAATATCCAAAGAAAAGGCCCGACGGCTGGCTGGAGGTGGAGATTGGAGAGTTTTTCTGTTCAGGAGAAGAAGATGGGGGGTTAATGGAGATGACATGTATGGATGTTGACCTTCATAGAATGAAGAGAGGCCTTATTGTTCAGGGGATTGAAGTCAGGCCCAAAAGAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010291 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0031967 GO:0031975 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

186

Amino Acids

20.44

Weight (kDa)

4.98

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	63 - 182	2.7e-21	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca	FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica	MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica	Prupe.6G356300_v2.0.a1
pyrus_communis	pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis	RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata	RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora	Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa	Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha	Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana	Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	71
AasI	GACNNNNNNGTC	1 cut(s)	85
Acc36I	ACCTGC	2 cut(s)	71, 186
AccB1I	GGYRCC	1 cut(s)	208
AccI	GTMKAC	1 cut(s)	18
AccII	CGCG	1 cut(s)	191
AciI	CCGC	2 cut(s)	66, 75
AclWI	GGATC	1 cut(s)	135
AcyI	GRCGYC	3 cut(s)	21, 80, 179
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	411
AflIII	ACRYGT	2 cut(s)	189, 479
AgsI	TTSAA	1 cut(s)	536
AhlI	ACTAGT	1 cut(s)	314
AluBI	AGCT	2 cut(s)	158, 217
AluI	AGCT	2 cut(s)	158, 217
Alw26I	GTCTC	5 cut(s)	172, 180, 305, 337, 355
AlwI	GGATC	1 cut(s)	135
Ama87I	CYCGRG	1 cut(s)	183
AoxI	GGCC	3 cut(s)	401, 514, 542
ApeKI	GCWGC	1 cut(s)	72
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	2 cut(s)	402, 543
AsuC2I	CCSGG	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	2 cut(s)	85, 452
BceAI	ACGGC	1 cut(s)	424
BcgI	CGANNNNNNTGC	4 cut(s)	8, 42, 174, 208
BcnI	CCSGG	1 cut(s)	358
BcoDI	GTCTC	5 cut(s)	172, 180, 305, 337, 355
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	131
BfuAI	ACCTGC	2 cut(s)	71, 186
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	358
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	2 cut(s)	402, 543
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	358
BmsI	GCATC	2 cut(s)	38, 140
BpiI	GAAGAC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	437
Bpu10I	CCTNAGC	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	358
Bsa29I	ATCGAT	1 cut(s)	375
BsaBI	GATNNNNATC	2 cut(s)	105, 111
BsaHI	GRCGYC	3 cut(s)	21, 80, 179
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse118I	RCCGGY	2 cut(s)	23, 82
Bse8I	GATNNNNATC	2 cut(s)	105, 111
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	2 cut(s)	155, 493
BseJI	GATNNNNATC	2 cut(s)	105, 111
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseMII	CTCAG	1 cut(s)	204
BseRI	GAGGAG	4 cut(s)	57, 60, 63, 218
BseXI	GCAGC	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	3 cut(s)	403, 516, 544
BshNI	GGYRCC	1 cut(s)	208
BshVI	ATCGAT	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	183
BsiSI	CCGG	3 cut(s)	24, 83, 357
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmAI	GTCTC	5 cut(s)	172, 180, 305, 337, 355
BsmBI	CGTCTC	2 cut(s)	172, 180
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	3 cut(s)	403, 516, 544
Bso31I	GGTCTC	1 cut(s)	355
BsoBI	CYCGRG	1 cut(s)	183
Bsp143I	GATC	2 cut(s)	106, 127
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	2 cut(s)	66, 75
BspANI	GGCC	3 cut(s)	403, 516, 544
BspCNI	CTCAG	1 cut(s)	205
BspDI	ATCGAT	1 cut(s)	375
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	210
BspMAI	CTGCAG	1 cut(s)	135
BspMI	ACCTGC	2 cut(s)	71, 186
BspPI	GGATC	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	355
BsrFI	RCCGGY	2 cut(s)	23, 82
BssAI	RCCGGY	2 cut(s)	23, 82
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	2 cut(s)	106, 127
BssNI	GRCGYC	3 cut(s)	21, 80, 179
BssT1I	CCWWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	16, 283
Bst6I	CTCTTC	2 cut(s)	303, 503
BstACI	GRCGYC	3 cut(s)	21, 80, 179
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstC8I	GCNNGC	2 cut(s)	193, 413
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	2 cut(s)	155, 493
BstFNI	CGCG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	2 cut(s)	109, 130
BstMAI	GTCTC	5 cut(s)	172, 180, 305, 337, 355
BstMBI	GATC	2 cut(s)	106, 127
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 139
BstNSI	RCATGY	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	356
BstSFI	CTRYAG	1 cut(s)	131
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	59
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
Bsu15I	ATCGAT	1 cut(s)	375
BsuRI	GGCC	3 cut(s)	403, 516, 544
BsuTUI	ATCGAT	1 cut(s)	375
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	2 cut(s)	155, 493
BtsIMutI	CAGTG	1 cut(s)	279
BveI	ACCTGC	2 cut(s)	71, 186
Cac8I	GCNNGC	2 cut(s)	193, 413
CfoI	GCGC	1 cut(s)	327
Cfr10I	RCCGGY	2 cut(s)	23, 82
Cfr13I	GGNCC	2 cut(s)	402, 543
ClaI	ATCGAT	1 cut(s)	375
CseI	GACGC	4 cut(s)	29, 88, 187, 197
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	3 cut(s)	124, 367, 480
CviJI	RGCY	9 cut(s)	72, 158, 217, 235, 403, 411, 415, 516, 544
CviKI_1	RGCY	9 cut(s)	72, 158, 217, 235, 403, 411, 415, 516, 544
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	108, 129
DpnII	GATC	2 cut(s)	106, 127
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
Eam1104I	CTCTTC	2 cut(s)	303, 503
EarI	CTCTTC	2 cut(s)	303, 503
Eco130I	CCWWGG	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	516
Eco31I	GGTCTC	1 cut(s)	355
Eco88I	CYCGRG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	366
EcoT22I	ATGCAT	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	366
Esp3I	CGTCTC	2 cut(s)	172, 180
FaeI	CATG	3 cut(s)	127, 370, 483
FaiI	YATR	7 cut(s)	125, 155, 221, 368, 481, 485, 501
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	3 cut(s)	123, 366, 479
FauI	CCCGC	2 cut(s)	59, 68
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	2 cut(s)	162, 500
Fsp4HI	GCNGC	1 cut(s)	73
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	1 cut(s)	73
GsuI	CTGGAG	1 cut(s)	437
HaeIII	GGCC	3 cut(s)	403, 516, 544
HapII	CCGG	3 cut(s)	24, 83, 357
HgaI	GACGC	4 cut(s)	29, 88, 187, 197
HhaI	GCGC	1 cut(s)	327
Hin1I	GRCGYC	3 cut(s)	21, 80, 179
Hin1II	CATG	3 cut(s)	127, 370, 483
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HincII	GTYRAC	2 cut(s)	19, 493
HindII	GTYRAC	2 cut(s)	19, 493
HinfI	GANTC	2 cut(s)	57, 265
HpaII	CCGG	3 cut(s)	24, 83, 357
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	3 cut(s)	19, 121, 493
Hpy188III	TCNNGA	3 cut(s)	33, 185, 447
Hpy8I	GTNNAC	3 cut(s)	19, 121, 493
Hpy99I	CGWCG	4 cut(s)	23, 167, 181, 410
HpyAV	CCTTC	3 cut(s)	47, 140, 506
HpyCH4III	ACNGT	2 cut(s)	16, 283
HpyCH4IV	ACGT	2 cut(s)	117, 162
HpyCH4V	TGCA	5 cut(s)	4, 29, 133, 153, 195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 139
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	2 cut(s)	117, 162
Hsp92I	GRCGYC	3 cut(s)	21, 80, 179
Hsp92II	CATG	3 cut(s)	127, 370, 483
HspAI	GCGC	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	106, 127
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	2 cut(s)	38, 140
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	2 cut(s)	117, 162
MalI	GATC	2 cut(s)	108, 129
MboI	GATC	2 cut(s)	106, 127
MboII	GAAGA	6 cut(s)	22, 317, 320, 464, 467, 520
MflI	RGATCY	1 cut(s)	127
MluI	ACGCGT	1 cut(s)	189
MnlI	CCTC	9 cut(s)	35, 38, 41, 192, 196, 199, 286, 412, 506
Mph1103I	ATGCAT	1 cut(s)	155
MseI	TTAA	2 cut(s)	173, 467
MspI	CCGG	3 cut(s)	24, 83, 357
MspR9I	CCNGG	1 cut(s)	358
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	72, 139
NciI	CCSGG	1 cut(s)	358
NcoI	CCATGG	1 cut(s)	366
NdeII	GATC	2 cut(s)	106, 127
NlaIII	CATG	3 cut(s)	127, 370, 483
NlaIV	GGNNCC	1 cut(s)	210
NsiI	ATGCAT	1 cut(s)	155
NspI	RCATGY	1 cut(s)	483
PaeR7I	CTCGAG	1 cut(s)	183
PaqCI	CACCTGC	1 cut(s)	71
PceI	AGGCCT	1 cut(s)	516
PciI	ACATGT	1 cut(s)	479
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PfeI	GAWTC	2 cut(s)	57, 265
PkrI	GCNGC	1 cut(s)	74
PscI	ACATGT	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	2 cut(s)	402, 543
PstI	CTGCAG	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SalI	GTCGAC	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	173, 467
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	2 cut(s)	106, 127
Sau96I	GGNCC	2 cut(s)	402, 543
ScrFI	CCNGG	1 cut(s)	358
SfaNI	GCATC	2 cut(s)	38, 140
SfcI	CTRYAG	1 cut(s)	131
Sfr274I	CTCGAG	1 cut(s)	183
SgrAI	CRCCGGYG	2 cut(s)	23, 82
SlaI	CTCGAG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
SpeI	ACTAGT	1 cut(s)	314
SseBI	AGGCCT	1 cut(s)	516
SsiI	CCGC	2 cut(s)	66, 75
SspMI	CTAG	1 cut(s)	315
StuI	AGGCCT	1 cut(s)	516
StyD4I	CCNGG	1 cut(s)	356
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	16, 283
TaiI	ACGT	2 cut(s)	120, 165
TaqI	TCGA	5 cut(s)	18, 89, 99, 184, 375
TfiI	GAWTC	2 cut(s)	57, 265
Tru1I	TTAA	2 cut(s)	173, 467
Tru9I	TTAA	2 cut(s)	173, 467
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	1 cut(s)	72
TspDTI	ATGAA	3 cut(s)	393, 488, 521
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	1 cut(s)	286
XceI	RCATGY	1 cut(s)	483
XhoI	CTCGAG	1 cut(s)	183
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	1 cut(s)	315
Zsp2I	ATGCAT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.