FvH4_6g01030

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000189
Physical Location & Seq
Forward (+)
568017 .. 569778
1762 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01030.t1

Sequence Viewer

Length: 852 bp
ATGCTGCAGCCGCAGCTGGACTTTCAAGCTTTGCCGGAAGGATGCATAGCCACCGTGATCTCCTTGACCAGTCCTCCAGATGCATGCAGGCTCTCGTTGCTTTCAAAGGTTGTCAGGTCGGCGGCAGAATCCGACGCCGTTTGGGATAAGTTCATTCCGCCTGAGACACAAATTACAATCCTATCTCACCCCAATTCCCTCTCCTCTCCTAATTTCAAATCCAAGAAGGACCTCTTCATGACTCTCTGCGACAACCCCGTCCTCATCAACGAGGGCACTATGAGCTTTTCATTGGACAAATGGAGTGGTAAGAAATGTTATATGATAGCTTCAAAGGGCCTTCGGATTGCTTGGGGTGATACTCCTCGGTATTGGGAATGGATTTCTCTGCCTGATTCCAGGTTTGAGGAGGTCGCTGAGCTTCGGGGGGTTGGTTGGTTTGAAATTCGTGGGAGAATAGCTACTCGCATGCTTTCCCCCTCCACTCTATATAAAGCTTATCTTGTGTACAAGTTTAATGGGCGACCTCATGGATTTGAAGACCATCCCACAGCGGTGGCCGTATCTGCAAGGTCTTATGGCTTTGATTACGAATCCCCAAATTTGAGTGAAATGGTTGAAGGAGGAGACCTTAAGTACACTGCCTTTCTGGCGCGGCCGGAAAGAGAAGTCAGTGAAGAAGCTCGACTTCCAGACGAGAGGGTGGATGGCTGGTTGGAGATGGAGCTAGGTGAGTATCTCTGTGAAGGTGATGAAGATGCGGAGTTGGAGATGATTTGTTGTGAGATTAATAGTAGCGGCAAGGATGGCATCATTGTGCAAGGGATTGAGGTCAGACCCAAAAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

284

Amino Acids

31.88

Weight (kDa)

4.84

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 104 - 280 1.7e-46 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 257
AccII CGCG 1 cut(s) 655
AciI CCGC 7 cut(s) 11, 122, 158, 554, 655, 761, 798
AcoI YGGCCR 2 cut(s) 558, 656
AcsI RAATTY 2 cut(s) 444, 601
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 2 cut(s) 509, 638
AflII CTTAAG 1 cut(s) 632
AgsI TTSAA 7 cut(s) 26, 105, 217, 333, 443, 539, 620
AjnI CCWGG 1 cut(s) 398
AleI CACNNNNGTG 1 cut(s) 554
AluBI AGCT 9 cut(s) 16, 29, 285, 329, 421, 461, 497, 683, 727
AluI AGCT 9 cut(s) 16, 29, 285, 329, 421, 461, 497, 683, 727
Alw26I GTCTC 2 cut(s) 158, 621
AoxI GGCC 3 cut(s) 337, 558, 656
ApeKI GCWGC 3 cut(s) 4, 7, 13
ApoI RAATTY 2 cut(s) 444, 601
AseI ATTAAT 1 cut(s) 789
AspLEI GCGC 1 cut(s) 655
AspS9I GGNCC 2 cut(s) 229, 337
AsuHPI GGTGA 4 cut(s) 179, 368, 743, 761
AvaII GGWCC 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 546
BbvI GCAGC 2 cut(s) 19, 25
BccI CCATC 4 cut(s) 552, 701, 715, 800
BceAI ACGGC 2 cut(s) 122, 545
BciT130I CCWGG 1 cut(s) 400
BcoDI GTCTC 2 cut(s) 158, 621
BfaI CTAG 2 cut(s) 728, 850
BfmI CTRYAG 1 cut(s) 5
BfrI CTTAAG 1 cut(s) 632
BglI GCCNNNNNGGC 1 cut(s) 650
BisI GCNGC 7 cut(s) 5, 8, 11, 14, 123, 656, 799
BlpI GCTNAGC 1 cut(s) 417
BlsI GCNGC 7 cut(s) 6, 9, 12, 15, 124, 657, 800
Bme1390I CCNGG 1 cut(s) 400
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 2 cut(s) 229, 337
BmrFI CCNGG 1 cut(s) 400
BmsI GCATC 4 cut(s) 32, 70, 748, 819
BpiI GAAGAC 1 cut(s) 546
BpmI CTGGAG 1 cut(s) 60
Bpu1102I GCTNAGC 1 cut(s) 417
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 621
BsaJI CCNNGG 1 cut(s) 365
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bse1I ACTGG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 400
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 4 cut(s) 47, 544, 712, 811
BseMII CTCAG 2 cut(s) 153, 408
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 4 cut(s) 193, 354, 422, 639
BseSI GKGCMC 1 cut(s) 278
BseX3I CGGCCG 1 cut(s) 656
BseXI GCAGC 2 cut(s) 19, 25
Bsh1236I CGCG 1 cut(s) 655
Bsh1285I CGRYCG 1 cut(s) 659
BshFI GGCC 3 cut(s) 339, 560, 658
BsiEI CGRYCG 1 cut(s) 659
BsiSI CCGG 2 cut(s) 35, 659
BsmAI GTCTC 2 cut(s) 158, 621
BsnI GGCC 3 cut(s) 339, 560, 658
Bso31I GGTCTC 1 cut(s) 621
Bsp1286I GDGCHC 1 cut(s) 278
Bsp1407I TGTACA 1 cut(s) 507
Bsp143I GATC 1 cut(s) 57
Bsp1720I GCTNAGC 1 cut(s) 417
BspACI CCGC 7 cut(s) 11, 122, 158, 554, 655, 761, 798
BspANI GGCC 3 cut(s) 339, 560, 658
BspCNI CTCAG 2 cut(s) 154, 409
BspFNI CGCG 1 cut(s) 655
BspHI TCATGA 1 cut(s) 237
BspMAI CTGCAG 1 cut(s) 9
BspTI CTTAAG 1 cut(s) 632
BspTNI GGTCTC 1 cut(s) 621
BsrGI TGTACA 1 cut(s) 507
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 1 cut(s) 57
BssNI GRCGYC 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 400
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 239
BstACI GRCGYC 1 cut(s) 135
BstAFI CTTAAG 1 cut(s) 632
BstAUI TGTACA 1 cut(s) 507
BstC8I GCNNGC 3 cut(s) 85, 89, 470
BstDEI CTNAG 2 cut(s) 162, 417
BstF5I GGATG 4 cut(s) 47, 544, 712, 811
BstFNI CGCG 1 cut(s) 655
BstHHI GCGC 1 cut(s) 655
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 2 cut(s) 158, 621
BstMBI GATC 1 cut(s) 57
BstMCI CGRYCG 1 cut(s) 659
BstMWI GCNNNNNNNGC 7 cut(s) 10, 13, 97, 282, 566, 650, 807
BstNI CCWGG 1 cut(s) 400
BstNSI RCATGY 2 cut(s) 87, 472
BstSCI CCNGG 1 cut(s) 398
BstSFI CTRYAG 1 cut(s) 5
BstSLI GKGCMC 1 cut(s) 278
BstUI CGCG 1 cut(s) 655
BstV1I GCAGC 2 cut(s) 19, 25
BstV2I GAAGAC 1 cut(s) 546
BstXI CCANNNNNNTGG 1 cut(s) 556
BstZI CGGCCG 1 cut(s) 656
BsuRI GGCC 3 cut(s) 339, 560, 658
BtsCI GGATG 4 cut(s) 47, 544, 712, 811
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 2 cut(s) 639, 679
Cac8I GCNNGC 3 cut(s) 85, 89, 470
CciI TCATGA 1 cut(s) 237
CfoI GCGC 1 cut(s) 655
Cfr13I GGNCC 2 cut(s) 229, 337
CseI GACGC 1 cut(s) 143
Csp6I GTAC 2 cut(s) 508, 637
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 4 cut(s) 84, 238, 469, 530
CviQI GTAC 2 cut(s) 508, 637
DdeI CTNAG 2 cut(s) 162, 417
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
DrdI GACNNNNNNGTC 1 cut(s) 257
DseDI GACNNNNNNGTC 1 cut(s) 257
EaeI YGGCCR 2 cut(s) 558, 656
EagI CGGCCG 1 cut(s) 656
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
EciI GGCGGA 1 cut(s) 147
EclXI CGGCCG 1 cut(s) 656
Eco31I GGTCTC 1 cut(s) 621
Eco47I GGWCC 1 cut(s) 229
Eco52I CGGCCG 1 cut(s) 656
EcoO109I RGGNCCY 2 cut(s) 229, 337
EcoRII CCWGG 1 cut(s) 398
EcoT22I ATGCAT 2 cut(s) 47, 85
FaeI CATG 4 cut(s) 87, 241, 472, 533
FalI AAGNNNNNCTT 6 cut(s) 218, 250, 486, 518, 672, 704
FatI CATG 4 cut(s) 83, 237, 468, 529
Fnu4HI GCNGC 7 cut(s) 5, 8, 11, 14, 123, 656, 799
FokI GGATG 4 cut(s) 54, 531, 719, 818
Fsp4HI GCNGC 7 cut(s) 5, 8, 11, 14, 123, 656, 799
FspBI CTAG 2 cut(s) 728, 850
GlaI GCGC 1 cut(s) 654
GluI GCNGC 7 cut(s) 5, 8, 11, 14, 123, 656, 799
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 3 cut(s) 339, 560, 658
HapII CCGG 2 cut(s) 35, 659
HgaI GACGC 1 cut(s) 143
HhaI GCGC 1 cut(s) 655
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 4 cut(s) 87, 241, 472, 533
Hin6I GCGC 1 cut(s) 653
HinP1I GCGC 1 cut(s) 653
HindIII AAGCTT 2 cut(s) 27, 495
HinfI GANTC 4 cut(s) 128, 241, 395, 593
HpaII CCGG 2 cut(s) 35, 659
HphI GGTGA 4 cut(s) 179, 368, 743, 761
Hpy166II GTNNAC 2 cut(s) 508, 639
Hpy188I TCNGA 3 cut(s) 133, 345, 836
Hpy188III TCNNGA 3 cut(s) 77, 238, 692
Hpy8I GTNNAC 2 cut(s) 508, 639
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 5 cut(s) 32, 220, 350, 614, 740
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 6 cut(s) 7, 45, 83, 87, 569, 820
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 13, 97, 282, 566, 650, 807
HpyF3I CTNAG 2 cut(s) 162, 417
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 4 cut(s) 87, 241, 472, 533
HspAI GCGC 1 cut(s) 653
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 724
Lsp1109I GCAGC 2 cut(s) 19, 25
LweI GCATC 4 cut(s) 32, 70, 748, 819
MaeI CTAG 2 cut(s) 728, 850
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 4 cut(s) 226, 551, 689, 767
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 5 cut(s) 171, 193, 211, 444, 601
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 3 cut(s) 156, 696, 747
Mph1103I ATGCAT 2 cut(s) 47, 85
MseI TTAA 3 cut(s) 516, 633, 789
MslI CAYNNNNRTG 2 cut(s) 554, 815
MspA1I CMGCKG 2 cut(s) 16, 554
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 2 cut(s) 35, 659
MspR9I CCNGG 1 cut(s) 400
MvaI CCWGG 1 cut(s) 400
MvnI CGCG 1 cut(s) 655
MwoI GCNNNNNNNGC 7 cut(s) 10, 13, 97, 282, 566, 650, 807
NdeII GATC 1 cut(s) 57
NlaIII CATG 4 cut(s) 87, 241, 472, 533
NsiI ATGCAT 2 cut(s) 47, 85
NspI RCATGY 2 cut(s) 87, 472
OliI CACNNNNGTG 1 cut(s) 554
PaeI GCATGC 2 cut(s) 87, 472
PagI TCATGA 1 cut(s) 237
PfeI GAWTC 3 cut(s) 128, 395, 593
PkrI GCNGC 7 cut(s) 6, 9, 12, 15, 124, 657, 800
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 229
PshBI ATTAAT 1 cut(s) 789
Psp5II RGGWCCY 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 398
PspGI CCWGG 1 cut(s) 398
PspPI GGNCC 2 cut(s) 229, 337
PspPPI RGGWCCY 1 cut(s) 229
PstI CTGCAG 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 16
RsaI GTAC 2 cut(s) 509, 638
RsaNI GTAC 2 cut(s) 508, 637
RseI CAYNNNNRTG 2 cut(s) 554, 815
SaqAI TTAA 3 cut(s) 516, 633, 789
SatI GCNGC 7 cut(s) 5, 8, 11, 14, 123, 656, 799
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 2 cut(s) 229, 337
SchI GAGTC 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 400
SduI GDGCHC 1 cut(s) 278
SfaNI GCATC 4 cut(s) 32, 70, 748, 819
SfcI CTRYAG 1 cut(s) 5
SinI GGWCC 1 cut(s) 229
SmiMI CAYNNNNRTG 2 cut(s) 554, 815
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
SphI GCATGC 2 cut(s) 87, 472
Sse9I AATT 5 cut(s) 171, 193, 211, 444, 601
SsiI CCGC 7 cut(s) 11, 122, 158, 554, 655, 761, 798
SspMI CTAG 2 cut(s) 728, 850
StyD4I CCNGG 1 cut(s) 398
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 685
TasI AATT 5 cut(s) 171, 193, 211, 444, 601
TatI WGTACW 2 cut(s) 507, 636
TauI GCSGC 4 cut(s) 13, 125, 658, 801
TfiI GAWTC 3 cut(s) 128, 395, 593
Tru1I TTAA 3 cut(s) 516, 633, 789
Tru9I TTAA 3 cut(s) 516, 633, 789
TscAI CASTG 2 cut(s) 646, 679
TseI GCWGC 3 cut(s) 4, 7, 13
TspDTI ATGAA 4 cut(s) 142, 226, 279, 768
TspRI CASTG 2 cut(s) 646, 679
Vha464I CTTAAG 1 cut(s) 632
VpaK11BI GGWCC 1 cut(s) 229
VspI ATTAAT 1 cut(s) 789
XapI RAATTY 2 cut(s) 444, 601
XceI RCATGY 2 cut(s) 87, 472
XspI CTAG 2 cut(s) 728, 850
Zsp2I ATGCAT 2 cut(s) 47, 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.