Rmu_sc0003116.1_g000039

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003116.1
Physical Location & Seq
Forward (+)
212734 .. 214313
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003116.1_g000039.1.cds

Sequence Viewer

Length: 1032 bp
atgctgacacgaacacacgaaggaagaacgagaacaagaacaaggcaccacgcagtgaaacagagcagcaagaaaaccatgcgtaacgatgaagaagatggacgaggaggaggaggaggaggaggaatcacctgcggcgctgtgacggtggagctggatctgcaggctttgccggagggatgcatagccaacgtcatctccctgacgactcctcccgatgcgtgccggctgtcgtcggtttcgaggagtttcaggtcggccgccgaatccgactccgtttggagcaggttcctgccgccggagattcccaccatcctgtctcactcggggcctcacgcccccagttgccgatccaaatccaaggagttctacctggctctctgccacaatccagtgctcattgacgatggcaaaatgagcttttcactagacaaatggagtgggaaaaaatgttacatggtatctgcaagggaccttgtgattgtttgggctgatactcctaactattggaagtggatttctctgcccgagtccagatttgaggaggttgctgagcttgttggtgtttgctggcttgaaatccgtggcaaaattgacactcgcttgctgtccccatcgactgtgtacaaagcttaccttgtgttcaagtcaactgcagcggcttatggatttgactaccaacctgccgaggtcagtgtaggtctggttggaggagcagagcccacaaagaagactgtgtttcttgacgccgatagtggccggactcagagctaccagattgtgccaaggcgtcttggcctacacctgagaaaccgcattttggtgcaagaatcccagcccagagagaccaatgacaatcaatacccgaaggaaagagcagacgggtggttggagattgagctgggtgagttcttctgtgaaggaggagtagatggggagttggaaatgacttgtttggaaaccagcggtggtcagtggaagggtggtcttattgttcaaggcattgaggtcaggccaaagaggaagtcctag
Functional Annotation

Protein Analysis

343

Amino Acids

38.01

Weight (kDa)

7.56

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 140
Acc36I ACCTGC 3 cut(s) 140, 276, 691
AccB1I GGYRCC 1 cut(s) 45
AciI CCGC 6 cut(s) 135, 261, 296, 659, 814, 966
AclWI GGATC 2 cut(s) 165, 345
AcoI YGGCCR 2 cut(s) 258, 757
AcyI GRCGYC 2 cut(s) 747, 790
AdeI CACNNNGTG 1 cut(s) 55
AfaI GTAC 1 cut(s) 626
AfiI CCNNNNNNNGG 2 cut(s) 298, 820
AgsI TTSAA 3 cut(s) 578, 646, 998
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 6 cut(s) 154, 420, 556, 632, 771, 901
AluI AGCT 6 cut(s) 154, 420, 556, 632, 771, 901
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 2 cut(s) 324, 839
AlwI GGATC 2 cut(s) 165, 345
Ama87I CYCGRG 2 cut(s) 325, 527
AoxI GGCC 5 cut(s) 258, 329, 757, 796, 1013
ApeKI GCWGC 2 cut(s) 66, 656
ArsI GACNNNNNNTTYG 1 cut(s) 1010
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 2 cut(s) 329, 472
AsuHPI GGTGA 2 cut(s) 121, 917
AvaI CYCGRG 2 cut(s) 325, 527
AvaII GGWCC 1 cut(s) 472
BanI GGYRCC 1 cut(s) 45
BanII GRGCYC 1 cut(s) 723
BbsI GAAGAC 1 cut(s) 737
Bbv12I GWGCWC 1 cut(s) 399
BbvI GCAGC 2 cut(s) 78, 668
BccI CCATC 5 cut(s) 92, 320, 401, 622, 926
BciT130I CCWGG 1 cut(s) 374
BcoDI GTCTC 2 cut(s) 324, 839
BfaI CTAG 2 cut(s) 428, 1030
BfmI CTRYAG 2 cut(s) 161, 654
BfoI RGCGCY 1 cut(s) 141
BfuAI ACCTGC 3 cut(s) 140, 276, 691
BisI GCNGC 6 cut(s) 67, 136, 261, 296, 657, 660
BlpI GCTNAGC 1 cut(s) 552
BlsI GCNGC 6 cut(s) 68, 137, 262, 297, 658, 661
Bme1390I CCNGG 1 cut(s) 374
Bme18I GGWCC 1 cut(s) 472
BmeT110I CYCGRG 2 cut(s) 325, 527
BmgT120I GGNCC 2 cut(s) 329, 472
BmiI GGNNCC 4 cut(s) 47, 290, 330, 473
BmrFI CCNGG 1 cut(s) 374
BmrI ACTGGG 1 cut(s) 336
BmsI GCATC 2 cut(s) 170, 208
BmuI ACTGGG 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 737
Bpu1102I GCTNAGC 1 cut(s) 552
BsaBI GATNNNNATC 1 cut(s) 355
BsaHI GRCGYC 2 cut(s) 747, 790
BsaI GGTCTC 1 cut(s) 839
BsaJI CCNNGG 4 cut(s) 360, 583, 687, 785
BsaXI ACNNNNNCTCC 4 cut(s) 182, 196, 212, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 820
Bse118I RCCGGY 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 342, 392
Bse8I GATNNNNATC 1 cut(s) 355
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 4 cut(s) 360, 583, 687, 785
BseGI GGATG 2 cut(s) 185, 312
BseJI GATNNNNATC 1 cut(s) 355
BseLI CCNNNNNNNGG 2 cut(s) 298, 820
BseMII CTCAG 3 cut(s) 543, 779, 797
BseNI ACTGG 2 cut(s) 342, 392
BseX3I CGGCCG 1 cut(s) 258
BseXI GCAGC 2 cut(s) 78, 668
BseYI CCCAGC 2 cut(s) 834, 901
Bsh1285I CGRYCG 1 cut(s) 261
BshFI GGCC 5 cut(s) 260, 331, 759, 798, 1015
BshNI GGYRCC 1 cut(s) 45
BsiEI CGRYCG 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 399
BsiHKCI CYCGRG 2 cut(s) 325, 527
BsiSI CCGG 4 cut(s) 173, 226, 299, 760
BslFI GGGAC 2 cut(s) 485, 595
BslI CCNNNNNNNGG 2 cut(s) 298, 820
BsmAI GTCTC 2 cut(s) 324, 839
BsmFI GGGAC 2 cut(s) 485, 595
BsnI GGCC 5 cut(s) 260, 331, 759, 798, 1015
Bso31I GGTCTC 1 cut(s) 839
BsoBI CYCGRG 2 cut(s) 325, 527
Bsp1286I GDGCHC 2 cut(s) 399, 723
Bsp1407I TGTACA 1 cut(s) 624
Bsp143I GATC 2 cut(s) 157, 350
Bsp1720I GCTNAGC 1 cut(s) 552
BspACI CCGC 6 cut(s) 135, 261, 296, 659, 814, 966
BspANI GGCC 5 cut(s) 260, 331, 759, 798, 1015
BspCNI CTCAG 3 cut(s) 544, 778, 798
BspLI GGNNCC 4 cut(s) 47, 290, 330, 473
BspMAI CTGCAG 2 cut(s) 165, 658
BspMI ACCTGC 3 cut(s) 140, 276, 691
BspPI GGATC 2 cut(s) 165, 345
BspT107I GGYRCC 1 cut(s) 45
BspTNI GGTCTC 1 cut(s) 839
BsrFI RCCGGY 1 cut(s) 225
BsrGI TGTACA 1 cut(s) 624
BsrI ACTGG 2 cut(s) 342, 392
BssAI RCCGGY 1 cut(s) 225
BssECI CCNNGG 4 cut(s) 360, 583, 687, 785
BssMI GATC 2 cut(s) 157, 350
BssNI GRCGYC 2 cut(s) 747, 790
BssT1I CCWWGG 2 cut(s) 360, 785
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 3 cut(s) 148, 622, 736
BstACI GRCGYC 2 cut(s) 747, 790
BstAPI GCANNNNNTGC 1 cut(s) 169
BstAUI TGTACA 1 cut(s) 624
BstC8I GCNNGC 5 cut(s) 165, 223, 227, 572, 605
BstDEI CTNAG 3 cut(s) 552, 765, 806
BstDSI CCRYGG 1 cut(s) 583
BstF5I GGATG 2 cut(s) 185, 312
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 2 cut(s) 160, 353
BstMAI GTCTC 2 cut(s) 324, 839
BstMBI GATC 2 cut(s) 157, 350
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 3 cut(s) 160, 169, 417
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 372
BstSFI CTRYAG 2 cut(s) 161, 654
BstV1I GCAGC 2 cut(s) 78, 668
BstV2I GAAGAC 1 cut(s) 737
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BstZI CGGCCG 1 cut(s) 258
BsuRI GGCC 5 cut(s) 260, 331, 759, 798, 1015
BtgI CCRYGG 1 cut(s) 583
BtsCI GGATG 2 cut(s) 185, 312
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 4 cut(s) 60, 399, 700, 980
BveI ACCTGC 3 cut(s) 140, 276, 691
Cac8I GCNNGC 5 cut(s) 165, 223, 227, 572, 605
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 2 cut(s) 329, 472
CseI GACGC 2 cut(s) 755, 779
Csp6I GTAC 1 cut(s) 625
CspCI CAANNNNNGTGG 2 cut(s) 421, 456
CviAII CATG 2 cut(s) 79, 457
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 3 cut(s) 552, 765, 806
DpnI GATC 2 cut(s) 159, 352
DpnII GATC 2 cut(s) 157, 350
DraIII CACNNNGTG 1 cut(s) 55
EaeI YGGCCR 2 cut(s) 258, 757
EagI CGGCCG 1 cut(s) 258
EclXI CGGCCG 1 cut(s) 258
Eco130I CCWWGG 2 cut(s) 360, 785
Eco24I GRGCYC 1 cut(s) 723
Eco31I GGTCTC 1 cut(s) 839
Eco47I GGWCC 1 cut(s) 472
Eco52I CGGCCG 1 cut(s) 258
Eco88I CYCGRG 2 cut(s) 325, 527
EcoO109I RGGNCCY 2 cut(s) 329, 472
EcoRII CCWGG 1 cut(s) 372
EcoT14I CCWWGG 2 cut(s) 360, 785
EcoT22I ATGCAT 1 cut(s) 185
EcoT38I GRGCYC 1 cut(s) 723
ErhI CCWWGG 2 cut(s) 360, 785
FaeI CATG 2 cut(s) 82, 460
FaiI YATR 4 cut(s) 80, 185, 458, 666
FalI AAGNNNNNCTT 2 cut(s) 621, 653
FaqI GGGAC 2 cut(s) 485, 595
FatI CATG 2 cut(s) 78, 456
Fnu4HI GCNGC 6 cut(s) 67, 136, 261, 296, 657, 660
FokI GGATG 2 cut(s) 192, 299
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 6 cut(s) 67, 136, 261, 296, 657, 660
FspBI CTAG 2 cut(s) 428, 1030
GlaI GCGC 1 cut(s) 139
GluI GCNGC 6 cut(s) 67, 136, 261, 296, 657, 660
GsaI CCCAGC 2 cut(s) 838, 905
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 5 cut(s) 260, 331, 759, 798, 1015
HapII CCGG 4 cut(s) 173, 226, 299, 760
HgaI GACGC 2 cut(s) 755, 779
HhaI GCGC 1 cut(s) 140
Hin1I GRCGYC 2 cut(s) 747, 790
Hin1II CATG 2 cut(s) 82, 460
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HindIII AAGCTT 1 cut(s) 630
HinfI GANTC 8 cut(s) 126, 208, 266, 272, 304, 530, 763, 830
HpaII CCGG 4 cut(s) 173, 226, 299, 760
HphI GGTGA 2 cut(s) 121, 917
Hpy166II GTNNAC 2 cut(s) 625, 651
Hpy188I TCNGA 2 cut(s) 271, 768
Hpy188III TCNNGA 3 cut(s) 215, 534, 743
Hpy8I GTNNAC 2 cut(s) 625, 651
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 4 cut(s) 14, 862, 914, 973
HpyCH4III ACNGT 3 cut(s) 148, 622, 736
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 5 cut(s) 163, 183, 467, 656, 826
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 169, 417
HpyF3I CTNAG 3 cut(s) 552, 765, 806
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 2 cut(s) 747, 790
Hsp92II CATG 2 cut(s) 82, 460
HspAI GCGC 1 cut(s) 138
KroI GCCGGC 1 cut(s) 225
KroNI GCCGGC 1 cut(s) 227
Kzo9I GATC 2 cut(s) 157, 350
LmnI GCTCC 3 cut(s) 151, 282, 713
Lsp1109I GCAGC 2 cut(s) 78, 668
LweI GCATC 2 cut(s) 170, 208
MaeI CTAG 2 cut(s) 428, 1030
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 3 cut(s) 83, 142, 452
MalI GATC 2 cut(s) 159, 352
MboI GATC 2 cut(s) 157, 350
MboII GAAGA 5 cut(s) 36, 104, 107, 742, 904
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 2 cut(s) 399, 723
MluCI AATT 1 cut(s) 591
MlyI GAGTC 4 cut(s) 202, 266, 539, 757
MmeI TCCRAC 4 cut(s) 294, 688, 870, 921
Mph1103I ATGCAT 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 821
MspA1I CMGCKG 2 cut(s) 659, 966
MspI CCGG 4 cut(s) 173, 226, 299, 760
MspR9I CCNGG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 3 cut(s) 160, 169, 417
NaeI GCCGGC 1 cut(s) 227
NdeII GATC 2 cut(s) 157, 350
NgoMIV GCCGGC 1 cut(s) 225
NlaIII CATG 2 cut(s) 82, 460
NlaIV GGNNCC 4 cut(s) 47, 290, 330, 473
NmeAIII GCCGAG 1 cut(s) 712
NmuCI GTSAC 1 cut(s) 142
NsiI ATGCAT 1 cut(s) 185
PaqCI CACCTGC 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PdiI GCCGGC 1 cut(s) 227
PfeI GAWTC 4 cut(s) 126, 266, 304, 830
PkrI GCNGC 6 cut(s) 68, 137, 262, 297, 658, 661
PleI GAGTC 4 cut(s) 202, 266, 538, 757
PpsI GAGTC 4 cut(s) 202, 266, 538, 757
PpuMI RGGWCCY 1 cut(s) 472
Psp5II RGGWCCY 1 cut(s) 472
Psp6I CCWGG 1 cut(s) 372
PspFI CCCAGC 2 cut(s) 834, 901
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 4 cut(s) 47, 290, 330, 473
PspPI GGNCC 2 cut(s) 329, 472
PspPPI RGGWCCY 1 cut(s) 472
PstI CTGCAG 2 cut(s) 165, 658
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
RseI CAYNNNNRTG 1 cut(s) 821
SatI GCNGC 6 cut(s) 67, 136, 261, 296, 657, 660
Sau3AI GATC 2 cut(s) 157, 350
Sau96I GGNCC 2 cut(s) 329, 472
SchI GAGTC 4 cut(s) 202, 266, 539, 757
ScrFI CCNGG 1 cut(s) 374
SduI GDGCHC 2 cut(s) 399, 723
SfaNI GCATC 2 cut(s) 170, 208
SfcI CTRYAG 2 cut(s) 161, 654
SinI GGWCC 1 cut(s) 472
SmiMI CAYNNNNRTG 1 cut(s) 821
Sse9I AATT 1 cut(s) 591
SsiI CCGC 6 cut(s) 135, 261, 296, 659, 814, 966
SspMI CTAG 2 cut(s) 428, 1030
StyD4I CCNGG 1 cut(s) 372
StyI CCWWGG 2 cut(s) 360, 785
TaaI ACNGT 3 cut(s) 148, 622, 736
TaiI ACGT 1 cut(s) 195
TaqI TCGA 2 cut(s) 242, 617
TasI AATT 1 cut(s) 591
TatI WGTACW 1 cut(s) 624
TauI GCSGC 4 cut(s) 138, 263, 298, 662
TfiI GAWTC 4 cut(s) 126, 266, 304, 830
TscAI CASTG 4 cut(s) 60, 399, 700, 980
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 2 cut(s) 66, 656
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 2 cut(s) 265, 572
TspRI CASTG 4 cut(s) 60, 399, 700, 980
VpaK11BI GGWCC 1 cut(s) 472
XspI CTAG 2 cut(s) 428, 1030
Zsp2I ATGCAT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.