Rh3BG026600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000189
Physical Location & Seq
Forward (+)
1754776 .. 1756198
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG026600.1

Sequence Viewer

Length: 1005 bp
ATGGATCTGCAGCAGTTGCCGGAGGGTTGCATAGCCAACATCGTATCGTTGACGACTCCCGAAGATGCCTGCCGCCTGTCGTTGCTCTCTAAGAACTTCAAGTCAGCGGCGGAATCCGACGCCGTTTGGGACAAGTTCCTTCCGCCTGAGACACCCACGATCCTGTCCGAGTCCGGAGAATCTGGATTATTGGCCGCCAAATCCAAGAAGGAGCTTTACCTCGCTCTCTGCAACAAACCTGTCCTCATCAACGACGGTAAATTGAGCTTTTCACTGGACAAATGGAGTGGGAAAAAATGTTACATGATATCTGCAAGAGAGCTTGGTATTACCTGGGGCGGTACTCCCCGGTATTGGAGATGGACTTCGCATCCTGAATCCAGGTTTCAGGAGGTGGCTGAGCTTCTTGATGTTTGCTGGCTTGAAATCTATGGGAAACTTGAAACACGCTTGCTGTCCCCATCGACTCTGTACAAAGCTTACCTTGTGTTCAAGTTTACTCCAGAGGCTTATGGATTTAAACACCTACCTGCGGAGGTCACTATAGGTCTGGAGGGAGAAGAACATAGTAAGCAGACTGTGTTTTTTCCCAACGAAGGAGAGATGAACGAATTCGAAAGTGAGATGGACTACTCCGAAGGAGAGAGCGATGATGCCGAAGGAGAGATCAATGACTCTAGAGGACTGAGTGAAGATGCGGAAGGGGAGAGCAAGGACGCCGAAGGAGAGAGTGACGAGACCGAAGGAGAAAGTGACGATGCCAAGGGGGAGACCCGTGACGCCGAAGTGCCTGAAGTAGTGTTCAATGACGACCGATACCAGAGGGAGGATCGAGACCAGAGGGAGAGATCCGGGTGGTCGGAGATTGAGCTGGGTGAGTTTTTTTGTGAAGGGGGAGATGATGATGGGCTGCTGAAAATGCATTGTTTGGCGAATGGGGGTGGTCATTGGAAGAGTGGTCTTATTGTTCAAGGCATTGAGGTCAGACCTATGAAGAAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

334

Amino Acids

37.49

Weight (kDa)

4.48

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 44 2.1e-06 F-box domain
PP2 PF14299 98 - 330 3e-52 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 538
AccIII TCCGGA 1 cut(s) 173
AciI CCGC 8 cut(s) 73, 107, 110, 143, 195, 339, 533, 698
AclWI GGATC 4 cut(s) 12, 154, 837, 843
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 1 cut(s) 611
AcuI CTGAAG 1 cut(s) 813
AcyI GRCGYC 3 cut(s) 120, 717, 780
AfaI GTAC 3 cut(s) 343, 473, 1001
AfiI CCNNNNNNNGG 4 cut(s) 354, 532, 596, 826
AgsI TTSAA 6 cut(s) 100, 425, 443, 493, 805, 971
AjnI CCWGG 2 cut(s) 332, 380
AluBI AGCT 6 cut(s) 214, 267, 322, 403, 479, 871
AluI AGCT 6 cut(s) 214, 267, 322, 403, 479, 871
Alw26I GTCTC 4 cut(s) 143, 731, 764, 828
AlwI GGATC 4 cut(s) 12, 154, 837, 843
Aor13HI TCCGGA 1 cut(s) 173
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 10, 910
ApoI RAATTY 1 cut(s) 611
Asp700I GAANNNNTTC 1 cut(s) 611
AsuC2I CCSGG 2 cut(s) 349, 853
AsuHPI GGTGA 1 cut(s) 887
AsuII TTCGAA 1 cut(s) 615
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BbvI GCAGC 2 cut(s) 22, 897
BccI CCATC 4 cut(s) 354, 469, 619, 899
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 2 cut(s) 334, 382
BcnI CCSGG 2 cut(s) 349, 853
BcoDI GTCTC 4 cut(s) 143, 731, 764, 828
BfaI CTAG 2 cut(s) 678, 1003
BfmI CTRYAG 2 cut(s) 8, 543
BfuAI ACCTGC 1 cut(s) 538
BisI GCNGC 5 cut(s) 11, 73, 108, 195, 911
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 5 cut(s) 12, 74, 109, 196, 912
BmcAI AGTACT 1 cut(s) 1001
Bme1390I CCNGG 4 cut(s) 334, 349, 382, 853
BmrFI CCNGG 4 cut(s) 334, 349, 382, 853
BmsI GCATC 5 cut(s) 55, 379, 643, 685, 748
BpmI CTGGAG 2 cut(s) 486, 572
Bpu1102I GCTNAGC 1 cut(s) 399
Bpu14I TTCGAA 1 cut(s) 615
BpuMI CCSGG 2 cut(s) 349, 853
BsaHI GRCGYC 3 cut(s) 120, 717, 780
BsaI GGTCTC 3 cut(s) 731, 764, 828
BsaJI CCNNGG 3 cut(s) 333, 347, 762
BsaWI WCCGGW 1 cut(s) 173
Bsc4I CCNNNNNNNGG 4 cut(s) 354, 532, 596, 826
Bse1I ACTGG 1 cut(s) 279
BseAI TCCGGA 1 cut(s) 173
BseBI CCWGG 2 cut(s) 334, 382
BseDI CCNNGG 3 cut(s) 333, 347, 762
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 4 cut(s) 354, 532, 596, 826
BseMII CTCAG 3 cut(s) 138, 390, 677
BseNI ACTGG 1 cut(s) 279
BseXI GCAGC 2 cut(s) 22, 897
BseYI CCCAGC 1 cut(s) 871
Bsh1285I CGRYCG 1 cut(s) 814
BshFI GGCC 1 cut(s) 194
BsiEI CGRYCG 1 cut(s) 814
BsiSI CCGG 4 cut(s) 20, 174, 349, 852
BslFI GGGAC 2 cut(s) 143, 442
BslI CCNNNNNNNGG 4 cut(s) 354, 532, 596, 826
BsmAI GTCTC 4 cut(s) 143, 731, 764, 828
BsmFI GGGAC 2 cut(s) 143, 442
BsnI GGCC 1 cut(s) 194
Bso31I GGTCTC 3 cut(s) 731, 764, 828
Bsp119I TTCGAA 1 cut(s) 615
Bsp13I TCCGGA 1 cut(s) 173
Bsp1407I TGTACA 1 cut(s) 471
Bsp143I GATC 5 cut(s) 4, 159, 666, 829, 848
Bsp1720I GCTNAGC 1 cut(s) 399
BspACI CCGC 8 cut(s) 73, 107, 110, 143, 195, 339, 533, 698
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 3 cut(s) 139, 391, 678
BspEI TCCGGA 1 cut(s) 173
BspMAI CTGCAG 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 4 cut(s) 12, 154, 837, 843
BspT104I TTCGAA 1 cut(s) 615
BspTNI GGTCTC 3 cut(s) 731, 764, 828
BsrGI TGTACA 1 cut(s) 471
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 3 cut(s) 333, 347, 762
BssMI GATC 5 cut(s) 4, 159, 666, 829, 848
BssNI GRCGYC 3 cut(s) 120, 717, 780
BssT1I CCWWGG 1 cut(s) 762
Bst2UI CCWGG 2 cut(s) 334, 382
Bst4CI ACNGT 2 cut(s) 257, 580
Bst6I CTCTTC 1 cut(s) 947
BstACI GRCGYC 3 cut(s) 120, 717, 780
BstAPI GCANNNNNTGC 1 cut(s) 16
BstAUI TGTACA 1 cut(s) 471
BstBI TTCGAA 1 cut(s) 615
BstC8I GCNNGC 3 cut(s) 70, 419, 452
BstDEI CTNAG 4 cut(s) 90, 147, 399, 686
BstF5I GGATG 1 cut(s) 370
BstKTI GATC 5 cut(s) 7, 162, 669, 832, 851
BstMAI GTCTC 4 cut(s) 143, 731, 764, 828
BstMBI GATC 5 cut(s) 4, 159, 666, 829, 848
BstMCI CGRYCG 1 cut(s) 814
BstMWI GCNNNNNNNGC 2 cut(s) 16, 919
BstNI CCWGG 2 cut(s) 334, 382
BstSCI CCNGG 4 cut(s) 332, 347, 380, 851
BstSFI CTRYAG 2 cut(s) 8, 543
BstV1I GCAGC 2 cut(s) 22, 897
BstX2I RGATCY 2 cut(s) 4, 848
BstYI RGATCY 2 cut(s) 4, 848
BsuRI GGCC 1 cut(s) 194
BtgZI GCGATG 1 cut(s) 663
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 1 cut(s) 272
BveI ACCTGC 1 cut(s) 538
Cac8I GCNNGC 3 cut(s) 70, 419, 452
CseI GACGC 3 cut(s) 128, 725, 788
Csp6I GTAC 3 cut(s) 342, 472, 1000
CspCI CAANNNNNGTGG 2 cut(s) 268, 303
CviAII CATG 1 cut(s) 304
CviQI GTAC 3 cut(s) 342, 472, 1000
DdeI CTNAG 4 cut(s) 90, 147, 399, 686
DpnI GATC 5 cut(s) 6, 161, 668, 831, 850
DpnII GATC 5 cut(s) 4, 159, 666, 829, 848
DraI TTTAAA 1 cut(s) 520
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 947
EarI CTCTTC 1 cut(s) 947
EciI GGCGGA 2 cut(s) 125, 132
Eco130I CCWWGG 1 cut(s) 762
Eco31I GGTCTC 3 cut(s) 731, 764, 828
Eco32I GATATC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 813
EcoRI GAATTC 1 cut(s) 611
EcoRII CCWGG 2 cut(s) 332, 380
EcoRV GATATC 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 762
EcoT22I ATGCAT 1 cut(s) 924
ErhI CCWWGG 1 cut(s) 762
FaeI CATG 1 cut(s) 307
FaiI YATR 7 cut(s) 32, 305, 432, 513, 545, 567, 992
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 2 cut(s) 143, 442
FatI CATG 1 cut(s) 303
Fnu4HI GCNGC 5 cut(s) 11, 73, 108, 195, 911
FokI GGATG 1 cut(s) 357
Fsp4HI GCNGC 5 cut(s) 11, 73, 108, 195, 911
FspBI CTAG 2 cut(s) 678, 1003
GluI GCNGC 5 cut(s) 11, 73, 108, 195, 911
GsaI CCCAGC 1 cut(s) 875
GsuI CTGGAG 2 cut(s) 486, 572
HaeIII GGCC 1 cut(s) 194
HapII CCGG 4 cut(s) 20, 174, 349, 852
HgaI GACGC 3 cut(s) 128, 725, 788
Hin1I GRCGYC 3 cut(s) 120, 717, 780
Hin1II CATG 1 cut(s) 307
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 477
HinfI GANTC 7 cut(s) 55, 113, 170, 179, 377, 466, 674
HpaII CCGG 4 cut(s) 20, 174, 349, 852
HphI GGTGA 1 cut(s) 887
Hpy166II GTNNAC 2 cut(s) 51, 498
Hpy188I TCNGA 5 cut(s) 118, 169, 637, 862, 986
Hpy8I GTNNAC 2 cut(s) 51, 498
Hpy99I CGWCG 2 cut(s) 122, 257
HpyAV CCTTC 9 cut(s) 149, 202, 590, 632, 653, 695, 716, 737, 884
HpyCH4III ACNGT 2 cut(s) 257, 580
HpyCH4V TGCA 5 cut(s) 10, 30, 231, 314, 922
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 919
HpyF3I CTNAG 4 cut(s) 90, 147, 399, 686
Hsp92I GRCGYC 3 cut(s) 120, 717, 780
Hsp92II CATG 1 cut(s) 307
Kpn2I TCCGGA 1 cut(s) 173
Kzo9I GATC 5 cut(s) 4, 159, 666, 829, 848
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 2 cut(s) 22, 897
LweI GCATC 5 cut(s) 55, 379, 643, 685, 748
MaeI CTAG 2 cut(s) 678, 1003
MaeIII GTNAC 5 cut(s) 299, 538, 731, 752, 776
MalI GATC 5 cut(s) 6, 161, 668, 831, 850
MboI GATC 5 cut(s) 4, 159, 666, 829, 848
MboII GAAGA 4 cut(s) 74, 572, 704, 964
MflI RGATCY 2 cut(s) 4, 848
MluCI AATT 2 cut(s) 260, 611
MlyI GAGTC 4 cut(s) 49, 179, 460, 668
MmeI TCCRAC 2 cut(s) 141, 840
Mph1103I ATGCAT 1 cut(s) 924
MroI TCCGGA 1 cut(s) 173
MroXI GAANNNNTTC 1 cut(s) 611
MseI TTAA 1 cut(s) 519
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 4 cut(s) 20, 174, 349, 852
MspR9I CCNGG 4 cut(s) 334, 349, 382, 853
MvaI CCWGG 2 cut(s) 334, 382
MwoI GCNNNNNNNGC 2 cut(s) 16, 919
NciI CCSGG 2 cut(s) 349, 853
NdeII GATC 5 cut(s) 4, 159, 666, 829, 848
NlaIII CATG 1 cut(s) 307
NmuCI GTSAC 4 cut(s) 538, 731, 752, 776
NsiI ATGCAT 1 cut(s) 924
NspV TTCGAA 1 cut(s) 615
PdmI GAANNNNTTC 1 cut(s) 611
PfeI GAWTC 3 cut(s) 113, 179, 377
PkrI GCNGC 5 cut(s) 12, 74, 109, 196, 912
PleI GAGTC 4 cut(s) 49, 178, 460, 668
PpsI GAGTC 4 cut(s) 49, 178, 460, 668
Psp6I CCWGG 2 cut(s) 332, 380
PspFI CCCAGC 1 cut(s) 871
PspGI CCWGG 2 cut(s) 332, 380
PstI CTGCAG 1 cut(s) 12
PsuI RGATCY 2 cut(s) 4, 848
RsaI GTAC 3 cut(s) 343, 473, 1001
RsaNI GTAC 3 cut(s) 342, 472, 1000
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 5 cut(s) 11, 73, 108, 195, 911
Sau3AI GATC 5 cut(s) 4, 159, 666, 829, 848
ScaI AGTACT 1 cut(s) 1001
SchI GAGTC 4 cut(s) 49, 179, 460, 668
ScrFI CCNGG 4 cut(s) 334, 349, 382, 853
SfaNI GCATC 5 cut(s) 55, 379, 643, 685, 748
SfcI CTRYAG 2 cut(s) 8, 543
SfuI TTCGAA 1 cut(s) 615
Sse9I AATT 2 cut(s) 260, 611
SsiI CCGC 8 cut(s) 73, 107, 110, 143, 195, 339, 533, 698
SspMI CTAG 2 cut(s) 678, 1003
StyD4I CCNGG 4 cut(s) 332, 347, 380, 851
StyI CCWWGG 1 cut(s) 762
TaaI ACNGT 2 cut(s) 257, 580
TaqI TCGA 3 cut(s) 464, 615, 832
TaqII GACCGA 2 cut(s) 755, 828
TasI AATT 2 cut(s) 260, 611
TatI WGTACW 2 cut(s) 471, 999
TauI GCSGC 3 cut(s) 75, 110, 197
TfiI GAWTC 3 cut(s) 113, 179, 377
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 4 cut(s) 538, 731, 752, 776
TseI GCWGC 2 cut(s) 10, 910
Tsp45I GTSAC 4 cut(s) 538, 731, 752, 776
TspDTI ATGAA 1 cut(s) 620
TspRI CASTG 1 cut(s) 279
XapI RAATTY 1 cut(s) 611
XbaI TCTAGA 1 cut(s) 677
XmnI GAANNNNTTC 1 cut(s) 611
XspI CTAG 2 cut(s) 678, 1003
ZrmI AGTACT 1 cut(s) 1001
Zsp2I ATGCAT 1 cut(s) 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.