Rh2CG051300

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000189
Physical Location & Seq
Reverse (-)
4051143 .. 4051661
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG051300.1

Sequence Viewer

Length: 519 bp
ATGGAAATCTCTGAGTCCAGGTTTAAGGAGGTGGCCGAGCTTCGTGTCGTATGTTGGCTTGAAATCCGTGGGAGAATTGAAACGCGCATGCTGTCCCCATCCACGACTTATAAAGCTTATCTGGTGTACAAGTTAATTGAAAGCACTGAACGAGACTGGGCCTGTGAGCCTGTCGTGGTCACAGTAGGTGCAAGAGCTTATGGGTTTGATTATGAATGCCCTGGTTTGAAGGAAATAACTGCAGGCATTAAGCACACTGCGTTTCTGGGCCCCAAAGAGAAATACAAGCACAGGCTGCACAGCAAAGGGAAATACAAGCACAGTTTGCAAGAAATCGGTGAAGCTAAATTTCCAAATGGAAGCAGGGCGGATGGGTGGCTGGAGATGGAGCTGGGTGAGTATCACTGTCAAGGGGATGAAGACGGGGAATTGGAGATGATTTGTTGTGAGATAGAAACTGGTATGGGTAAGGGTGGTCTCATTGTTCAAGGGATTGAGGTCAGACCGAAAAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

172

Amino Acids

19.56

Weight (kDa)

6.01

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 4 - 169 8.8e-34 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 111
AccII CGCG 1 cut(s) 85
AciI CCGC 1 cut(s) 368
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 1 cut(s) 347
AfaI GTAC 1 cut(s) 128
AgsI TTSAA 5 cut(s) 62, 80, 140, 229, 488
AjnI CCWGG 2 cut(s) 17, 220
AluBI AGCT 5 cut(s) 40, 116, 197, 344, 391
AluI AGCT 5 cut(s) 40, 116, 197, 344, 391
Alw26I GTCTC 2 cut(s) 147, 482
AoxI GGCC 3 cut(s) 33, 159, 268
ApaI GGGCCC 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 295
ApoI RAATTY 1 cut(s) 347
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 3 cut(s) 159, 268, 269
AsuHPI GGTGA 2 cut(s) 350, 407
BaeGI GKGCMC 1 cut(s) 272
BanII GRGCYC 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 426
BbvI GCAGC 1 cut(s) 282
BccI CCATC 3 cut(s) 106, 365, 379
BciT130I CCWGG 2 cut(s) 19, 222
BcoDI GTCTC 2 cut(s) 147, 482
BfaI CTAG 1 cut(s) 517
BfmI CTRYAG 1 cut(s) 240
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
Bme1390I CCNGG 2 cut(s) 19, 222
BmgT120I GGNCC 3 cut(s) 159, 268, 269
BmiI GGNNCC 2 cut(s) 270, 271
BmrFI CCNGG 2 cut(s) 19, 222
BmrI ACTGGG 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 426
BpmI CTGGAG 1 cut(s) 401
BsaI GGTCTC 1 cut(s) 482
BsaJI CCNNGG 2 cut(s) 67, 220
Bse1I ACTGG 2 cut(s) 161, 463
BseBI CCWGG 2 cut(s) 19, 222
BseDI CCNNGG 2 cut(s) 67, 220
BseGI GGATG 3 cut(s) 98, 376, 421
BseNI ACTGG 2 cut(s) 161, 463
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 1 cut(s) 282
BseYI CCCAGC 1 cut(s) 391
BsgI GTGCAG 1 cut(s) 281
Bsh1236I CGCG 1 cut(s) 85
BshFI GGCC 3 cut(s) 35, 161, 270
BslFI GGGAC 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 147, 482
BsmFI GGGAC 1 cut(s) 79
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 3 cut(s) 35, 161, 270
Bso31I GGTCTC 1 cut(s) 482
Bsp120I GGGCCC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 272
Bsp1407I TGTACA 1 cut(s) 126
BspACI CCGC 1 cut(s) 368
BspANI GGCC 3 cut(s) 35, 161, 270
BspCNI CTCAG 1 cut(s) 4
BspFNI CGCG 1 cut(s) 85
BspLI GGNNCC 2 cut(s) 270, 271
BspMAI CTGCAG 1 cut(s) 244
BspTNI GGTCTC 1 cut(s) 482
BsrGI TGTACA 1 cut(s) 126
BsrI ACTGG 2 cut(s) 161, 463
BssECI CCNNGG 2 cut(s) 67, 220
Bst2UI CCWGG 2 cut(s) 19, 222
Bst4CI ACNGT 3 cut(s) 184, 323, 407
BstAPI GCANNNNNTGC 2 cut(s) 295, 325
BstAUI TGTACA 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 89, 244
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 3 cut(s) 98, 376, 421
BstFNI CGCG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 87
BstMAI GTCTC 2 cut(s) 147, 482
BstMWI GCNNNNNNNGC 2 cut(s) 295, 325
BstNI CCWGG 2 cut(s) 19, 222
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 2 cut(s) 17, 220
BstSFI CTRYAG 1 cut(s) 240
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 282
BstV2I GAAGAC 1 cut(s) 426
BsuRI GGCC 3 cut(s) 35, 161, 270
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 3 cut(s) 98, 376, 421
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 3 cut(s) 144, 255, 403
Cac8I GCNNGC 2 cut(s) 89, 244
CfoI GCGC 1 cut(s) 87
Cfr13I GGNCC 3 cut(s) 159, 268, 269
Csp6I GTAC 1 cut(s) 127
CviAII CATG 1 cut(s) 88
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 33
EciI GGCGGA 1 cut(s) 383
Eco24I GRGCYC 1 cut(s) 272
Eco31I GGTCTC 1 cut(s) 482
EcoO109I RGGNCCY 1 cut(s) 269
EcoRII CCWGG 2 cut(s) 17, 220
EcoT38I GRGCYC 1 cut(s) 272
FaeI CATG 1 cut(s) 91
FaiI YATR 6 cut(s) 52, 89, 111, 201, 213, 464
FaqI GGGAC 1 cut(s) 79
FatI CATG 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 3 cut(s) 85, 383, 428
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 296
FspBI CTAG 1 cut(s) 517
GlaI GCGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 296
GsaI CCCAGC 1 cut(s) 395
GsuI CTGGAG 1 cut(s) 401
HaeIII GGCC 3 cut(s) 35, 161, 270
HhaI GCGC 1 cut(s) 87
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 1 cut(s) 14
HphI GGTGA 2 cut(s) 350, 407
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 13, 503
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 3 cut(s) 184, 323, 407
HpyCH4V TGCA 4 cut(s) 191, 242, 298, 328
HpyF10VI GCNNNNNNNGC 2 cut(s) 295, 325
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 388
Lsp1109I GCAGC 1 cut(s) 282
MaeI CTAG 1 cut(s) 517
MaeIII GTNAC 1 cut(s) 178
MboII GAAGA 1 cut(s) 431
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 4 cut(s) 75, 135, 347, 428
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 2 cut(s) 22, 490
MseI TTAA 3 cut(s) 24, 134, 249
MspR9I CCNGG 2 cut(s) 19, 222
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 2 cut(s) 19, 222
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 2 cut(s) 295, 325
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 2 cut(s) 270, 271
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 178
NspI RCATGY 1 cut(s) 91
PaeI GCATGC 1 cut(s) 91
PctI GAATGC 1 cut(s) 221
PkrI GCNGC 1 cut(s) 297
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PsiI TTATAA 1 cut(s) 111
Psp6I CCWGG 2 cut(s) 17, 220
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 2 cut(s) 17, 220
PspN4I GGNNCC 2 cut(s) 270, 271
PspOMI GGGCCC 1 cut(s) 268
PspPI GGNCC 3 cut(s) 159, 268, 269
PstI CTGCAG 1 cut(s) 244
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SaqAI TTAA 3 cut(s) 24, 134, 249
SatI GCNGC 1 cut(s) 296
Sau96I GGNCC 3 cut(s) 159, 268, 269
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 2 cut(s) 19, 222
SduI GDGCHC 1 cut(s) 272
SetI ASST 9 cut(s) 23, 33, 42, 118, 190, 199, 346, 393, 501
SfcI CTRYAG 1 cut(s) 240
SphI GCATGC 1 cut(s) 91
Sse9I AATT 4 cut(s) 75, 135, 347, 428
SsiI CCGC 1 cut(s) 368
SspMI CTAG 1 cut(s) 517
StyD4I CCNGG 2 cut(s) 17, 220
TaaI ACNGT 3 cut(s) 184, 323, 407
TasI AATT 4 cut(s) 75, 135, 347, 428
TatI WGTACW 1 cut(s) 126
Tru1I TTAA 3 cut(s) 24, 134, 249
Tru9I TTAA 3 cut(s) 24, 134, 249
TscAI CASTG 3 cut(s) 151, 262, 410
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 228, 432
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 3 cut(s) 151, 262, 410
XapI RAATTY 1 cut(s) 347
XceI RCATGY 1 cut(s) 91
XspI CTAG 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.