MD04G1237600.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000189
Physical Location & Seq
Reverse (-)
31588379 .. 31593406
5028 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1237600.v1.1.491

Sequence Viewer

Length: 738 bp
ATGGAACTCGATGACGATCATCATCACGTTCACATGGATCTGCTGTCGTCGGCTGATTCCGACGCTGTTTGGGACAAGTTCCTTCCCCCTGATATCCCCTCCATCCTATCTCACTCCTCCTCCTCCGAGAAGAAGCTTTACCTCACTCTCTGCGAAAACCCTGTCCTCGTTGACGACGGCAAAATGAGTTTTACTCTGGACAAATGGAGTGGGAAAAAATGTTACATGATATCGCCGAAGGACCTTATGATTATTTGGGGTGATACTCCTGAGTACTGGAAATGGATTTCTCTTGCCAACTCCAGGTTTGAGGAGGTGGCTGCGCTTGTAGTTGTTTGGTGGCTTGAGATCCGTGGCAAAATTGATACACGGATTCTTTCCCCCTCCACTGTCTACAAAGCTTATCTTGTGTTCATGTTAAGTGAAGGGGCTAGAGGATTTGATCGTGACGATCCCTTGGAGGTCAAGGTAGGACTTTTTGGGGAAGAAGAGACTAGTAGTAAGCGCATTGTGTTTCTGGGGAGACAGAACATTACCGGGAGACCCATGGAAATCGATGAAACTCAATATCCAAAGAAAAGGCCCGACGGCTGGCTGGAGGTGGAGATTGGAGAGTTTTTCTGTCCAGGAGAAGAAGATGGGGGGTTAATGGAGATGACATGTATGGATGTTGACCTTCATAGAATGAAGAGAGGCCTTATTGTTCAGGGGATTGAAGTCAGGCCCAAAAGAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

246

Amino Acids

28.13

Weight (kDa)

4.95

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 72 - 242 2.4e-52 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 393
AclWI GGATC 3 cut(s) 45, 343, 446
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 2 cut(s) 303, 591
AflIII ACRYGT 1 cut(s) 659
AgsI TTSAA 1 cut(s) 716
AhlI ACTAGT 1 cut(s) 494
AjnI CCWGG 2 cut(s) 302, 625
AluBI AGCT 2 cut(s) 136, 401
AluI AGCT 2 cut(s) 136, 401
Alw26I GTCTC 3 cut(s) 485, 517, 535
AlwI GGATC 3 cut(s) 45, 343, 446
AoxI GGCC 3 cut(s) 581, 694, 722
ApeKI GCWGC 1 cut(s) 320
ArsI GACNNNNNNTTYG 2 cut(s) 147, 179
AspLEI GCGC 2 cut(s) 325, 507
AspS9I GGNCC 3 cut(s) 241, 582, 723
AsuC2I CCSGG 1 cut(s) 538
AsuHPI GGTGA 1 cut(s) 272
AvaII GGWCC 1 cut(s) 241
BarI GAAGNNNNNNTAC 2 cut(s) 122, 154
BbvI GCAGC 1 cut(s) 307
BccI CCATC 2 cut(s) 110, 632
BceAI ACGGC 2 cut(s) 193, 604
BciT130I CCWGG 2 cut(s) 304, 627
BcnI CCSGG 1 cut(s) 538
BcoDI GTCTC 3 cut(s) 485, 517, 535
BcuI ACTAGT 1 cut(s) 494
BfaI CTAG 2 cut(s) 432, 495
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 3 cut(s) 304, 538, 627
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 3 cut(s) 241, 582, 723
BmrFI CCNGG 3 cut(s) 304, 538, 627
BplI GAGNNNNNCTC 2 cut(s) 178, 210
BpmI CTGGAG 2 cut(s) 286, 617
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 538
Bsa29I ATCGAT 1 cut(s) 555
BsaBI GATNNNNATC 2 cut(s) 15, 21
BsaI GGTCTC 1 cut(s) 535
BsaJI CCNNGG 3 cut(s) 352, 456, 546
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 591
Bse1I ACTGG 1 cut(s) 281
Bse8I GATNNNNATC 2 cut(s) 15, 21
BseBI CCWGG 2 cut(s) 304, 627
BseCI ATCGAT 1 cut(s) 555
BseDI CCNNGG 3 cut(s) 352, 456, 546
BseGI GGATG 2 cut(s) 102, 673
BseJI GATNNNNATC 2 cut(s) 15, 21
BseLI CCNNNNNNNGG 2 cut(s) 303, 591
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 281
BseRI GAGGAG 4 cut(s) 106, 109, 112, 326
BseXI GCAGC 1 cut(s) 307
BshFI GGCC 3 cut(s) 583, 696, 724
BshVI ATCGAT 1 cut(s) 555
BsiSI CCGG 1 cut(s) 537
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 2 cut(s) 303, 591
BsmAI GTCTC 3 cut(s) 485, 517, 535
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 3 cut(s) 583, 696, 724
Bso31I GGTCTC 1 cut(s) 535
Bsp143I GATC 5 cut(s) 16, 37, 348, 442, 451
Bsp19I CCATGG 1 cut(s) 546
BspANI GGCC 3 cut(s) 583, 696, 724
BspCNI CTCAG 1 cut(s) 262
BspDI ATCGAT 1 cut(s) 555
BspPI GGATC 3 cut(s) 45, 343, 446
BspTNI GGTCTC 1 cut(s) 535
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 3 cut(s) 352, 456, 546
BssMI GATC 5 cut(s) 16, 37, 348, 442, 451
BssT1I CCWWGG 2 cut(s) 456, 546
Bst2UI CCWGG 2 cut(s) 304, 627
Bst4CI ACNGT 1 cut(s) 391
Bst6I CTCTTC 2 cut(s) 483, 683
BstC8I GCNNGC 1 cut(s) 593
BstDEI CTNAG 1 cut(s) 270
BstDSI CCRYGG 2 cut(s) 352, 546
BstF5I GGATG 2 cut(s) 102, 673
BstHHI GCGC 2 cut(s) 325, 507
BstKTI GATC 5 cut(s) 19, 40, 351, 445, 454
BstMAI GTCTC 3 cut(s) 485, 517, 535
BstMBI GATC 5 cut(s) 16, 37, 348, 442, 451
BstNI CCWGG 2 cut(s) 304, 627
BstNSI RCATGY 1 cut(s) 663
BstSCI CCNGG 3 cut(s) 302, 536, 625
BstV1I GCAGC 1 cut(s) 307
BstX2I RGATCY 2 cut(s) 37, 348
BstYI RGATCY 2 cut(s) 37, 348
Bsu15I ATCGAT 1 cut(s) 555
BsuRI GGCC 3 cut(s) 583, 696, 724
BsuTUI ATCGAT 1 cut(s) 555
BtgI CCRYGG 2 cut(s) 352, 546
BtsCI GGATG 2 cut(s) 102, 673
BtsIMutI CAGTG 1 cut(s) 387
Cac8I GCNNGC 1 cut(s) 593
CfoI GCGC 2 cut(s) 325, 507
Cfr13I GGNCC 3 cut(s) 241, 582, 723
ClaI ATCGAT 1 cut(s) 555
CseI GACGC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 274
CspCI CAANNNNNGTGG 2 cut(s) 190, 225
CviAII CATG 5 cut(s) 34, 226, 415, 547, 660
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 1 cut(s) 270
DpnI GATC 5 cut(s) 18, 39, 350, 444, 453
DpnII GATC 5 cut(s) 16, 37, 348, 442, 451
Eam1104I CTCTTC 2 cut(s) 483, 683
EarI CTCTTC 2 cut(s) 483, 683
Eco130I CCWWGG 2 cut(s) 456, 546
Eco147I AGGCCT 1 cut(s) 696
Eco31I GGTCTC 1 cut(s) 535
Eco32I GATATC 2 cut(s) 94, 231
Eco47I GGWCC 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 302, 625
EcoRV GATATC 2 cut(s) 94, 231
EcoT14I CCWWGG 2 cut(s) 456, 546
ErhI CCWWGG 2 cut(s) 456, 546
FaeI CATG 5 cut(s) 37, 229, 418, 550, 663
FaiI YATR 8 cut(s) 35, 227, 248, 416, 548, 661, 665, 681
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 1 cut(s) 86
FatI CATG 5 cut(s) 33, 225, 414, 546, 659
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 2 cut(s) 89, 680
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 2 cut(s) 432, 495
GlaI GCGC 2 cut(s) 324, 506
GluI GCNGC 1 cut(s) 321
GsuI CTGGAG 2 cut(s) 286, 617
HaeIII GGCC 3 cut(s) 583, 696, 724
HapII CCGG 1 cut(s) 537
HgaI GACGC 1 cut(s) 71
HhaI GCGC 2 cut(s) 325, 507
Hin1II CATG 5 cut(s) 37, 229, 418, 550, 663
Hin6I GCGC 2 cut(s) 323, 505
HinP1I GCGC 2 cut(s) 323, 505
HincII GTYRAC 2 cut(s) 172, 673
HindII GTYRAC 2 cut(s) 172, 673
HindIII AAGCTT 2 cut(s) 134, 399
HinfI GANTC 2 cut(s) 56, 373
HpaII CCGG 1 cut(s) 537
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 4 cut(s) 31, 172, 394, 673
Hpy188I TCNGA 2 cut(s) 61, 127
Hpy188III TCNNGA 3 cut(s) 197, 269, 446
Hpy8I GTNNAC 4 cut(s) 31, 172, 394, 673
Hpy99I CGWCG 4 cut(s) 52, 65, 179, 590
HpyAV CCTTC 4 cut(s) 92, 232, 419, 686
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4IV ACGT 1 cut(s) 27
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 5 cut(s) 37, 229, 418, 550, 663
HspAI GCGC 2 cut(s) 323, 505
Kzo9I GATC 5 cut(s) 16, 37, 348, 442, 451
Lsp1109I GCAGC 1 cut(s) 307
MaeI CTAG 2 cut(s) 432, 495
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 2 cut(s) 221, 446
MalI GATC 5 cut(s) 18, 39, 350, 444, 453
MboI GATC 5 cut(s) 16, 37, 348, 442, 451
MboII GAAGA 6 cut(s) 142, 497, 500, 644, 647, 700
MflI RGATCY 2 cut(s) 37, 348
MluCI AATT 1 cut(s) 360
MmeI TCCRAC 1 cut(s) 84
MseI TTAA 2 cut(s) 419, 647
MspI CCGG 1 cut(s) 537
MspR9I CCNGG 3 cut(s) 304, 538, 627
MvaI CCWGG 2 cut(s) 304, 627
NciI CCSGG 1 cut(s) 538
NcoI CCATGG 1 cut(s) 546
NdeII GATC 5 cut(s) 16, 37, 348, 442, 451
NlaIII CATG 5 cut(s) 37, 229, 418, 550, 663
NmuCI GTSAC 1 cut(s) 446
NspI RCATGY 1 cut(s) 663
PceI AGGCCT 1 cut(s) 696
PciI ACATGT 1 cut(s) 659
PfeI GAWTC 2 cut(s) 56, 373
PfoI TCCNGGA 1 cut(s) 625
PkrI GCNGC 1 cut(s) 322
PpuMI RGGWCCY 1 cut(s) 241
PscI ACATGT 1 cut(s) 659
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 302, 625
PspGI CCWGG 2 cut(s) 302, 625
PspPI GGNCC 3 cut(s) 241, 582, 723
PspPPI RGGWCCY 1 cut(s) 241
PsuI RGATCY 2 cut(s) 37, 348
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
SaqAI TTAA 2 cut(s) 419, 647
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 5 cut(s) 16, 37, 348, 442, 451
Sau96I GGNCC 3 cut(s) 241, 582, 723
ScaI AGTACT 1 cut(s) 275
ScrFI CCNGG 3 cut(s) 304, 538, 627
SinI GGWCC 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SpeI ACTAGT 1 cut(s) 494
Sse9I AATT 1 cut(s) 360
SseBI AGGCCT 1 cut(s) 696
SspMI CTAG 2 cut(s) 432, 495
StuI AGGCCT 1 cut(s) 696
StyD4I CCNGG 3 cut(s) 302, 536, 625
StyI CCWWGG 2 cut(s) 456, 546
TaaI ACNGT 1 cut(s) 391
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 9, 555
TasI AATT 1 cut(s) 360
TatI WGTACW 1 cut(s) 273
TfiI GAWTC 2 cut(s) 56, 373
Tru1I TTAA 2 cut(s) 419, 647
Tru9I TTAA 2 cut(s) 419, 647
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 4 cut(s) 403, 573, 668, 701
TspGWI ACGGA 2 cut(s) 341, 385
TspRI CASTG 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 241
XceI RCATGY 1 cut(s) 663
XmiI GTMKAC 1 cut(s) 393
XspI CTAG 2 cut(s) 432, 495
ZrmI AGTACT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.