Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000189

Physical Location & Seq

Genomic Coordinates Reverse (-)

616088 .. 617322

Gene Structure 1235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGACCAAAACAAGGTGCATGCATGAGCATTTTCGTAAAATTGTACAACGAGTTAAGAAGACTCTTAGACTCTCAGCTTCCGACAAAAGTCACGGCGTTGCTGAGTTGGATGACTTACCGGAAGAATGTGTCTCAATCATAGTCTCTTTCACAAGCCCTCAAGATGCGTGCGTCCTTGCTTCGGTTTCGAAAACCTTTGCTTCGGCGGTCAAGTCAGATATTGTATGGGAGAAGTTTATTCCGCCAGAGTATGAATCTTTGATTTCTCAATCCCGAGCTTTCAAATTCTTATCGAAGAAGGAGCTCTATTTCGCTCTTTGCGACAAATCTGTTCTAATTGACGATGGCAAAAAGAGCTTATGGATAGAAAAAGCGAACGCGAAGAGATGTATCATGATATCAGCGATGAACCTTGCAATCGCGTGGGGGAATTCTCCTCAGAGTTGGCGATGGATTCCAGATCCTCAAGCTAGGTTTGAAACAGTAGCGGAGCTACTTGAAGTATGTTTGTTTGAGATTCGTGGCAGAATAAATAGTCGTGTGATATCTCCAAAAACTCGTTACTCGGCTTACATTGTGTACAAGAAATTGAATATATGTTATGGCTTTGAGAATGTAGCCGTAGAAGTTGTAGTTGGAGTGGTGGGGCAGGATTTAGAAGAATCTTGTCGAAGATATATATGCTTTGATGAGACTATGGATGAGCAGTTTCGAAGGAGAGATAGGGGAAAGAACCTAGTAAAACCAGAGAGGAGAAAAGATGGGTGGATGGAGATAAAGATTGGGGAATTCTTCAATGAAGGAGGATTATTGAACGATGATGAAATTGAGATGGTTGCTTTAGAGGCTAAGCAGCGTCATTGGAAACGTGGCTTGATCATTCAAGGAATTGAAATCCGTCCTACGAATATCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

305

Amino Acids

35.24

Weight (kDa)

8.76

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	36 - 78	1.3e-08	F-box domain
F-box-like	PF12937	36 - 78	2.4e-06	F-box-like
PP2	PF14299	128 - 301	4.2e-54	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca	FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica	MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica	Prupe.6G356300_v2.0.a1
pyrus_communis	pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis	RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata	RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora	Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa	Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha	Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana	Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	380, 422
AciI	CCGC	3 cut(s)	206, 242, 488
AclWI	GGATC	1 cut(s)	455
AcsI	RAATTY	3 cut(s)	284, 430, 788
AfaI	GTAC	2 cut(s)	45, 581
AfiI	CCNNNNNNNGG	2 cut(s)	12, 181
AgsI	TTSAA	8 cut(s)	283, 479, 500, 592, 796, 814, 884, 893
AjuI	GAANNNNNNNTTGG	2 cut(s)	618, 650
AluBI	AGCT	6 cut(s)	77, 278, 304, 357, 470, 493
AluI	AGCT	6 cut(s)	77, 278, 304, 357, 470, 493
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	3 cut(s)	136, 148, 686
AlwI	GGATC	1 cut(s)	455
Ama87I	CYCGRG	1 cut(s)	273
ApeKI	GCWGC	1 cut(s)	853
ApoI	RAATTY	3 cut(s)	284, 430, 788
AsuII	TTCGAA	2 cut(s)	188, 712
AvaI	CYCGRG	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	1 cut(s)	865
BccI	CCATC	5 cut(s)	338, 444, 755, 763, 826
BceAI	ACGGC	2 cut(s)	109, 605
BclI	TGATCA	1 cut(s)	876
BcoDI	GTCTC	3 cut(s)	136, 148, 686
BfaI	CTAG	2 cut(s)	471, 737
BisI	GCNGC	1 cut(s)	854
BlpI	GCTNAGC	1 cut(s)	849
BlsI	GCNGC	1 cut(s)	855
BmeT110I	CYCGRG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	154
BoxI	GACNNNNGTC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	65
Bpu1102I	GCTNAGC	1 cut(s)	849
Bpu14I	TTCGAA	2 cut(s)	188, 712
BpuEI	CTTGAG	2 cut(s)	144, 450
BsaWI	WCCGGW	2 cut(s)	118, 912
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 181
BseGI	GGATG	3 cut(s)	115, 706, 774
BseLI	CCNNNNNNNGG	2 cut(s)	12, 181
BseMII	CTCAG	3 cut(s)	87, 93, 452
BseRI	GAGGAG	2 cut(s)	426, 766
BseXI	GCAGC	1 cut(s)	865
Bsh1236I	CGCG	2 cut(s)	380, 422
BsiHKAI	GWGCWC	1 cut(s)	306
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	119, 913
BslI	CCNNNNNNNGG	2 cut(s)	12, 181
BsmAI	GTCTC	3 cut(s)	136, 148, 686
BsoBI	CYCGRG	1 cut(s)	273
Bsp119I	TTCGAA	2 cut(s)	188, 712
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp1407I	TGTACA	2 cut(s)	43, 579
Bsp143I	GATC	2 cut(s)	460, 876
Bsp1720I	GCTNAGC	1 cut(s)	849
BspACI	CCGC	3 cut(s)	206, 242, 488
BspCNI	CTCAG	3 cut(s)	86, 94, 451
BspFNI	CGCG	2 cut(s)	380, 422
BspHI	TCATGA	1 cut(s)	393
BspPI	GGATC	1 cut(s)	455
BspT104I	TTCGAA	2 cut(s)	188, 712
BsrGI	TGTACA	2 cut(s)	43, 579
BssMI	GATC	2 cut(s)	460, 876
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	1 cut(s)	377
BstAUI	TGTACA	2 cut(s)	43, 579
BstBI	TTCGAA	2 cut(s)	188, 712
BstC8I	GCNNGC	2 cut(s)	20, 169
BstDEI	CTNAG	5 cut(s)	65, 73, 102, 438, 849
BstF5I	GGATG	3 cut(s)	115, 706, 774
BstFNI	CGCG	2 cut(s)	380, 422
BstKTI	GATC	2 cut(s)	463, 879
BstMAI	GTCTC	3 cut(s)	136, 148, 686
BstMBI	GATC	2 cut(s)	460, 876
BstMWI	GCNNNNNNNGC	2 cut(s)	354, 845
BstNSI	RCATGY	1 cut(s)	22
BstPAI	GACNNNNGTC	1 cut(s)	87
BstUI	CGCG	2 cut(s)	380, 422
BstV1I	GCAGC	1 cut(s)	865
BstV2I	GAAGAC	1 cut(s)	65
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BtgZI	GCGATG	2 cut(s)	419, 463
BtsCI	GGATG	3 cut(s)	115, 706, 774
Cac8I	GCNNGC	2 cut(s)	20, 169
CciI	TCATGA	1 cut(s)	393
CseI	GACGC	2 cut(s)	160, 845
Csp6I	GTAC	2 cut(s)	44, 580
CviAII	CATG	3 cut(s)	19, 23, 394
CviQI	GTAC	2 cut(s)	44, 580
DdeI	CTNAG	5 cut(s)	65, 73, 102, 438, 849
DpnI	GATC	2 cut(s)	462, 878
DpnII	GATC	2 cut(s)	460, 876
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
EciI	GGCGGA	1 cut(s)	231
Ecl136II	GAGCTC	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	306
Eco32I	GATATC	2 cut(s)	399, 546
Eco53kI	GAGCTC	1 cut(s)	304
Eco88I	CYCGRG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	304
EcoRI	GAATTC	2 cut(s)	430, 788
EcoRV	GATATC	2 cut(s)	399, 546
EcoT22I	ATGCAT	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	306
FaeI	CATG	3 cut(s)	22, 26, 397
FatI	CATG	3 cut(s)	18, 22, 393
FbaI	TGATCA	1 cut(s)	876
Fnu4HI	GCNGC	1 cut(s)	854
FokI	GGATG	3 cut(s)	122, 713, 781
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	854
FspBI	CTAG	2 cut(s)	471, 737
GluI	GCNGC	1 cut(s)	854
HapII	CCGG	2 cut(s)	119, 913
HgaI	GACGC	2 cut(s)	160, 845
Hin1II	CATG	3 cut(s)	22, 26, 397
HinfI	GANTC	6 cut(s)	61, 69, 254, 454, 517, 662
HpaII	CCGG	2 cut(s)	119, 913
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188I	TCNGA	3 cut(s)	82, 217, 441
Hpy188III	TCNNGA	4 cut(s)	161, 273, 394, 458
Hpy8I	GTNNAC	1 cut(s)	580
HpyAV	CCTTC	3 cut(s)	292, 708, 794
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4IV	ACGT	1 cut(s)	868
HpyCH4V	TGCA	3 cut(s)	18, 22, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	354, 845
HpyF3I	CTNAG	5 cut(s)	65, 73, 102, 438, 849
HpySE526I	ACGT	1 cut(s)	868
Hsp92II	CATG	3 cut(s)	22, 26, 397
Ksp22I	TGATCA	1 cut(s)	876
Kzo9I	GATC	2 cut(s)	460, 876
LmnI	GCTCC	2 cut(s)	301, 490
LpnPI	CCDG	5 cut(s)	132, 258, 471, 635, 759
Lsp1109I	GCAGC	1 cut(s)	865
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	2 cut(s)	471, 737
MaeII	ACGT	1 cut(s)	868
MaeIII	GTNAC	2 cut(s)	89, 560
MalI	GATC	2 cut(s)	462, 878
MboI	GATC	2 cut(s)	460, 876
MboII	GAAGA	7 cut(s)	70, 134, 307, 394, 671, 684, 784
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	8 cut(s)	39, 284, 336, 430, 587, 788, 825, 888
MlyI	GAGTC	2 cut(s)	55, 63
MmeI	TCCRAC	3 cut(s)	87, 105, 616
MnlI	CCTC	6 cut(s)	168, 447, 474, 744, 797, 838
Mph1103I	ATGCAT	1 cut(s)	24
MseI	TTAA	1 cut(s)	54
MspI	CCGG	2 cut(s)	119, 913
MvnI	CGCG	2 cut(s)	380, 422
MwoI	GCNNNNNNNGC	2 cut(s)	354, 845
NdeII	GATC	2 cut(s)	460, 876
NlaIII	CATG	3 cut(s)	22, 26, 397
NmeAIII	GCCGAG	1 cut(s)	545
NmuCI	GTSAC	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	24
NspI	RCATGY	1 cut(s)	22
NspV	TTCGAA	2 cut(s)	188, 712
PaeI	GCATGC	1 cut(s)	22
PagI	TCATGA	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PfeI	GAWTC	4 cut(s)	254, 454, 517, 662
PkrI	GCNGC	1 cut(s)	855
PleI	GAGTC	2 cut(s)	55, 63
PpsI	GAGTC	2 cut(s)	55, 63
PshAI	GACNNNNGTC	1 cut(s)	87
Psp124BI	GAGCTC	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	460
RsaI	GTAC	2 cut(s)	45, 581
RsaNI	GTAC	2 cut(s)	44, 580
SacI	GAGCTC	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	1 cut(s)	854
Sau3AI	GATC	2 cut(s)	460, 876
SchI	GAGTC	2 cut(s)	55, 63
SduI	GDGCHC	1 cut(s)	306
SfaNI	GCATC	1 cut(s)	154
SfuI	TTCGAA	2 cut(s)	188, 712
SmlI	CTYRAG	2 cut(s)	159, 465
SmoI	CTYRAG	2 cut(s)	159, 465
SphI	GCATGC	1 cut(s)	22
Sse9I	AATT	8 cut(s)	39, 284, 336, 430, 587, 788, 825, 888
SsiI	CCGC	3 cut(s)	206, 242, 488
SspMI	CTAG	2 cut(s)	471, 737
SstI	GAGCTC	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	484
TaiI	ACGT	1 cut(s)	871
TaqI	TCGA	4 cut(s)	188, 293, 670, 712
TasI	AATT	8 cut(s)	39, 284, 336, 430, 587, 788, 825, 888
TatI	WGTACW	2 cut(s)	43, 579
TfiI	GAWTC	4 cut(s)	254, 454, 517, 662
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	1 cut(s)	853
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	4 cut(s)	267, 422, 813, 837
TspGWI	ACGGA	1 cut(s)	887
XapI	RAATTY	3 cut(s)	284, 430, 788
XceI	RCATGY	1 cut(s)	22
XspI	CTAG	2 cut(s)	471, 737
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.