Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000189

Physical Location & Seq

Genomic Coordinates Reverse (-)

619323 .. 620793

Gene Structure 1471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGGGAGAAAACGCAGAGTTAAATCGGAGTCGTCTCCGTTCGATTCATTTCCGGAAGATTGCATCTCCTACATAATCTCTTTTACAAATCCACGCGATGCGTGCGTCGCTGCTACGGTTTCGAAAACGTTTGAATCGACGGTGAAGTCAGATATTATATGGGAGAAGTTTCTTCCGGCGGATTATGAATCTCTGATTCCTCCATCGCGAGTTTTCTCATCGAAGAAGGAGCTCTATTTCTCTCTCTGTAACGATCCTGTTCTATTCGACGATGACAAAAAGAGCGTATGGTTAGAGAAAGCGAGTGGGAAGAGGTGTCTGATGTTATCTGCGATGAACCTCTCAATCATATGGGGAGATAATCCTCAGTATTGGCAATGGATTCCAATTCCTGAATCTAGGTTTGAAAAAGTAGCGAAACTTCGCGATGTATGTTGGTTCGAGATTCGTGGCAGAACGAATACTCGTGTATTATCTCCAAGAACTCGTTACTCGGCTTATATTGTGTTCAAGGGAGTGGATAAATGTTATGGCTTTCAGAATGTGGCCATAGAAGCTGCGGTAGGAGTGGTGGGACAGGAGCCTTCTAGAAGATTAATATGCTTTAGTGAAGCTATAAGGAGGGGAAGGAGGAACGTTGTGAAACCTAAGCAGAGAGAAGATGGGTGGATGGAGATTGAGCTTGGGGAGTTCTTCAATGATGGAGGAATAATGGATAATGATGAAATTGAGATGAGTGCTTTAGAGACTAAGCAGCTCAATCGGAAGTGTGGCTTGATCATTCAAGGAATTGAAATCCGACCTGCTAAAATCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

272

Amino Acids

31.29

Weight (kDa)

8.71

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	15 - 56	8.6e-07	F-box domain
PP2	PF14299	104 - 268	4.4e-60	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca	FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica	MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica	Prupe.6G356300_v2.0.a1
pyrus_communis	pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis	RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata	RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora	Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa	Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha	Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana	Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	145
Acc36I	ACCTGC	1 cut(s)	811
AccII	CGCG	3 cut(s)	96, 208, 426
AccIII	TCCGGA	1 cut(s)	52
AciI	CCGC	2 cut(s)	179, 560
AclI	AACGTT	2 cut(s)	128, 636
AclWI	GGATC	1 cut(s)	248
AcoI	YGGCCR	1 cut(s)	546
AgsI	TTSAA	6 cut(s)	134, 407, 511, 697, 785, 794
AluBI	AGCT	5 cut(s)	232, 557, 614, 682, 757
AluI	AGCT	5 cut(s)	232, 557, 614, 682, 757
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	2 cut(s)	39, 740
AlwI	GGATC	1 cut(s)	248
Aor13HI	TCCGGA	1 cut(s)	52
AoxI	GGCC	1 cut(s)	546
ApeKI	GCWGC	3 cut(s)	110, 557, 754
AseI	ATTAAT	1 cut(s)	596
AsuHPI	GGTGA	1 cut(s)	154
AsuII	TTCGAA	1 cut(s)	122
BalI	TGGCCA	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	234
BarI	GAAGNNNNNNTAC	2 cut(s)	405, 437
BauI	CACGAG	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	97, 544, 766
BccI	CCATC	4 cut(s)	211, 656, 664, 695
BcgI	CGANNNNNNTGC	2 cut(s)	743, 777
BclI	TGATCA	1 cut(s)	777
BcoDI	GTCTC	2 cut(s)	39, 740
BfaI	CTAG	2 cut(s)	399, 588
BfuAI	ACCTGC	1 cut(s)	811
BisI	GCNGC	3 cut(s)	111, 558, 755
BlsI	GCNGC	3 cut(s)	112, 559, 756
BmiI	GGNNCC	1 cut(s)	582
BmsI	GCATC	2 cut(s)	72, 88
Bpu10I	CCTNAGC	1 cut(s)	648
Bpu14I	TTCGAA	1 cut(s)	122
BsaWI	WCCGGW	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	383
BseAI	TCCGGA	1 cut(s)	52
BseGI	GGATG	1 cut(s)	675
BseMI	GCAATG	1 cut(s)	383
BseMII	CTCAG	1 cut(s)	380
BseXI	GCAGC	3 cut(s)	97, 544, 766
Bsh1236I	CGCG	3 cut(s)	96, 208, 426
BshFI	GGCC	1 cut(s)	548
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	53, 176
BslFI	GGGAC	1 cut(s)	588
BsmAI	GTCTC	2 cut(s)	39, 740
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	588
BsnI	GGCC	1 cut(s)	548
Bsp119I	TTCGAA	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp13I	TCCGGA	1 cut(s)	52
Bsp143I	GATC	2 cut(s)	253, 777
Bsp68I	TCGCGA	2 cut(s)	208, 426
BspACI	CCGC	2 cut(s)	179, 560
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	1 cut(s)	379
BspEI	TCCGGA	1 cut(s)	52
BspFNI	CGCG	3 cut(s)	96, 208, 426
BspLI	GGNNCC	1 cut(s)	582
BspMI	ACCTGC	1 cut(s)	811
BspPI	GGATC	1 cut(s)	248
BspT104I	TTCGAA	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	383
BssMI	GATC	2 cut(s)	253, 777
BssSI	CACGAG	1 cut(s)	465
Bst2BI	CACGAG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	118, 142
Bst6I	CTCTTC	1 cut(s)	305
BstBI	TTCGAA	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	3 cut(s)	366, 648, 750
BstF5I	GGATG	1 cut(s)	675
BstFNI	CGCG	3 cut(s)	96, 208, 426
BstKTI	GATC	2 cut(s)	256, 780
BstMAI	GTCTC	2 cut(s)	39, 740
BstMBI	GATC	2 cut(s)	253, 777
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 107, 554
BstUI	CGCG	3 cut(s)	96, 208, 426
BstV1I	GCAGC	3 cut(s)	97, 544, 766
BsuRI	GGCC	1 cut(s)	548
BtgZI	GCGATG	4 cut(s)	111, 189, 347, 441
BtsCI	GGATG	1 cut(s)	675
BtuMI	TCGCGA	2 cut(s)	208, 426
BveI	ACCTGC	1 cut(s)	811
Cac8I	GCNNGC	1 cut(s)	103
CseI	GACGC	1 cut(s)	94
DdeI	CTNAG	3 cut(s)	366, 648, 750
DpnI	GATC	2 cut(s)	255, 779
DpnII	GATC	2 cut(s)	253, 777
DrdI	GACNNNNNNGTC	1 cut(s)	145
DseDI	GACNNNNNNGTC	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	546
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
EciI	GGCGGA	1 cut(s)	194
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	234
Eco53kI	GAGCTC	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	39
FalI	AAGNNNNNCTT	2 cut(s)	758, 790
FaqI	GGGAC	1 cut(s)	588
FauNDI	CATATG	1 cut(s)	350
FbaI	TGATCA	1 cut(s)	777
Fnu4HI	GCNGC	3 cut(s)	111, 558, 755
FokI	GGATG	1 cut(s)	682
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	3 cut(s)	111, 558, 755
FspBI	CTAG	2 cut(s)	399, 588
GluI	GCNGC	3 cut(s)	111, 558, 755
HaeIII	GGCC	1 cut(s)	548
HapII	CCGG	2 cut(s)	53, 176
HgaI	GACGC	1 cut(s)	94
HinfI	GANTC	8 cut(s)	29, 44, 134, 188, 196, 382, 395, 445
HpaII	CCGG	2 cut(s)	53, 176
HphI	GGTGA	1 cut(s)	154
Hpy188I	TCNGA	8 cut(s)	28, 151, 195, 321, 540, 765, 800, 818
Hpy188III	TCNNGA	6 cut(s)	53, 207, 392, 425, 442, 588
Hpy99I	CGWCG	3 cut(s)	110, 142, 272
HpyAV	CCTTC	3 cut(s)	220, 594, 621
HpyCH4III	ACNGT	2 cut(s)	118, 142
HpyCH4IV	ACGT	2 cut(s)	128, 636
HpyCH4V	TGCA	1 cut(s)	63
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 107, 554
HpyF3I	CTNAG	3 cut(s)	366, 648, 750
HpySE526I	ACGT	2 cut(s)	128, 636
Kpn2I	TCCGGA	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	777
Kzo9I	GATC	2 cut(s)	253, 777
LmnI	GCTCC	2 cut(s)	229, 580
LpnPI	CCDG	5 cut(s)	66, 189, 270, 405, 563
Lsp1109I	GCAGC	3 cut(s)	97, 544, 766
LweI	GCATC	2 cut(s)	72, 88
MaeI	CTAG	2 cut(s)	399, 588
MaeII	ACGT	2 cut(s)	128, 636
MaeIII	GTNAC	2 cut(s)	248, 488
MalI	GATC	2 cut(s)	255, 779
MboI	GATC	2 cut(s)	253, 777
MboII	GAAGA	7 cut(s)	68, 164, 235, 322, 603, 671, 685
MhlI	GDGCHC	1 cut(s)	234
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	3 cut(s)	387, 726, 789
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	7 cut(s)	210, 306, 350, 375, 615, 624, 698
Mox20I	TGGCCA	1 cut(s)	548
MroI	TCCGGA	1 cut(s)	52
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	2 cut(s)	21, 596
Msp20I	TGGCCA	1 cut(s)	548
MspI	CCGG	2 cut(s)	53, 176
MvnI	CGCG	3 cut(s)	96, 208, 426
MwoI	GCNNNNNNNGC	3 cut(s)	102, 107, 554
NdeI	CATATG	1 cut(s)	350
NdeII	GATC	2 cut(s)	253, 777
NlaIV	GGNNCC	1 cut(s)	582
NmeAIII	GCCGAG	1 cut(s)	473
NruI	TCGCGA	2 cut(s)	208, 426
NspV	TTCGAA	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PfeI	GAWTC	7 cut(s)	44, 134, 188, 196, 382, 395, 445
PkrI	GCNGC	3 cut(s)	112, 559, 756
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PshBI	ATTAAT	1 cut(s)	596
Psp124BI	GAGCTC	1 cut(s)	234
Psp1406I	AACGTT	2 cut(s)	128, 636
PspN4I	GGNNCC	1 cut(s)	582
RruI	TCGCGA	2 cut(s)	208, 426
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	21, 596
SatI	GCNGC	3 cut(s)	111, 558, 755
Sau3AI	GATC	2 cut(s)	253, 777
SchI	GAGTC	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	234
SfaNI	GCATC	2 cut(s)	72, 88
SfuI	TTCGAA	1 cut(s)	122
Sse9I	AATT	3 cut(s)	387, 726, 789
SsiI	CCGC	2 cut(s)	179, 560
SspMI	CTAG	2 cut(s)	399, 588
SstI	GAGCTC	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	118, 142
TaiI	ACGT	2 cut(s)	131, 639
TaqI	TCGA	6 cut(s)	42, 122, 137, 221, 267, 441
TasI	AATT	3 cut(s)	387, 726, 789
TfiI	GAWTC	7 cut(s)	44, 134, 188, 196, 382, 395, 445
Tru1I	TTAA	2 cut(s)	21, 596
Tru9I	TTAA	2 cut(s)	21, 596
TseI	GCWGC	3 cut(s)	110, 557, 754
TspDTI	ATGAA	4 cut(s)	36, 201, 350, 738
TspGWI	ACGGA	1 cut(s)	27
VspI	ATTAAT	1 cut(s)	596
XbaI	TCTAGA	1 cut(s)	587
XspI	CTAG	2 cut(s)	399, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.