Rroxscaffold_2G00137910

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000189
Physical Location & Seq
Reverse (-)
75892693 .. 75893356
664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00137910.1

Sequence Viewer

Length: 534 bp
ATGCAGAGTTTGTCACTGGACAAGTGGAGTGGGAAGAAATGTTACATGATACCTGCAAGGAGCCTTCAGATTATTTGGTCTGATACTCCTCAGTATTGGAGATGGATTTCTCTCCCTGACACCAGGTTTGAGGAGGTGGCTGAGCTTCTTGGTGTTTGGTGGCTTGAAATCAGTGGAAAAATTGATAGACGCATGATGTCTCCGTCGACTCTGTATAAAGCTGATCTTGTCTACAGGTTAACTGCAATGTCTTATGGATTTGAGTGCCAATCTGTGGAGGTCACAGTTGGAGGAGAAGCTAATAAGCGGATTGTGTTTCTGGAAGCTGCGGGGCGGATAAACAAGAGATCGGTATACTGGACTCACTTTTTGGGTTTGCATGCCGCACTGGTACAGGCACAGTCATCGTCCCAGCACAGAGAAATCGAATTAGCTCGTCAATATCCAAAGGAAAGAGCTGACGGCTGGTTGGAGATCGAACTGGTGAATTTTTCTGTGAAGGAGGTGAAGAAGAAGATGGGGAATTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

177

Amino Acids

20.68

Weight (kDa)

9.23

Isoelectric Point (pI)

57.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 12 - 170 3e-40 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 61
AccB7I CCANNNNNTGG 1 cut(s) 274
AccI GTMKAC 3 cut(s) 206, 231, 354
AciI CCGC 4 cut(s) 307, 329, 334, 384
AcsI RAATTY 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 1 cut(s) 393
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 1 cut(s) 167
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 6 cut(s) 145, 221, 299, 326, 434, 458
AluI AGCT 6 cut(s) 145, 221, 299, 326, 434, 458
Alw26I GTCTC 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 1 cut(s) 487
ArsI GACNNNNNNTTYG 4 cut(s) 110, 142, 352, 384
AsuHPI GGTGA 2 cut(s) 496, 517
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BbvI GCAGC 1 cut(s) 313
BccI CCATC 2 cut(s) 96, 511
BceAI ACGGC 1 cut(s) 478
BcgI CGANNNNNNTGC 2 cut(s) 387, 421
BciT130I CCWGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 232
BfuAI ACCTGC 1 cut(s) 61
BisI GCNGC 2 cut(s) 327, 384
BlpI GCTNAGC 1 cut(s) 141
BlsI GCNGC 2 cut(s) 328, 385
Bme1390I CCNGG 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 124
Bpu1102I GCTNAGC 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 4 cut(s) 21, 362, 393, 486
Bse3DI GCAATG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 2 cut(s) 104, 132
BseNI ACTGG 4 cut(s) 21, 362, 393, 486
BseRI GAGGAG 3 cut(s) 78, 146, 306
BseXI GCAGC 1 cut(s) 313
BseYI CCCAGC 1 cut(s) 411
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 394
Bsp143I GATC 3 cut(s) 223, 347, 474
Bsp1720I GCTNAGC 1 cut(s) 141
BspACI CCGC 4 cut(s) 307, 329, 334, 384
BspCNI CTCAG 2 cut(s) 103, 133
BspLI GGNNCC 1 cut(s) 62
BspMI ACCTGC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 252
BsrI ACTGG 4 cut(s) 21, 362, 393, 486
BssMI GATC 3 cut(s) 223, 347, 474
BssNAI GTATAC 1 cut(s) 355
Bst1107I GTATAC 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 286, 402
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 2 cut(s) 90, 141
BstKTI GATC 3 cut(s) 226, 350, 477
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 3 cut(s) 223, 347, 474
BstNI CCWGG 1 cut(s) 124
BstNSI RCATGY 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 313
BstZ17I GTATAC 1 cut(s) 355
BtsIMutI CAGTG 3 cut(s) 14, 178, 386
BveI ACCTGC 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 381
CseI GACGC 1 cut(s) 198
CsiI ACCWGGT 1 cut(s) 122
Csp6I GTAC 1 cut(s) 392
CspCI CAANNNNNGTGG 2 cut(s) 10, 45
CviAII CATG 3 cut(s) 46, 193, 380
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 2 cut(s) 90, 141
DpnI GATC 3 cut(s) 225, 349, 476
DpnII GATC 3 cut(s) 223, 347, 474
EciI GGCGGA 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 122
FaeI CATG 3 cut(s) 49, 196, 383
FaiI YATR 6 cut(s) 47, 194, 216, 255, 355, 381
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FaqI GGGAC 1 cut(s) 394
FatI CATG 3 cut(s) 45, 192, 379
FauI CCCGC 1 cut(s) 322
FblI GTMKAC 3 cut(s) 206, 231, 354
Fnu4HI GCNGC 2 cut(s) 327, 384
Fsp4HI GCNGC 2 cut(s) 327, 384
GluI GCNGC 2 cut(s) 327, 384
GsaI CCCAGC 1 cut(s) 415
HgaI GACGC 1 cut(s) 198
Hin1II CATG 3 cut(s) 49, 196, 383
HincII GTYRAC 2 cut(s) 207, 240
HindII GTYRAC 2 cut(s) 207, 240
HinfI GANTC 2 cut(s) 208, 361
HpaI GTTAAC 1 cut(s) 240
HphI GGTGA 2 cut(s) 496, 517
Hpy166II GTNNAC 4 cut(s) 207, 232, 240, 355
Hpy188I TCNGA 2 cut(s) 69, 82
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 4 cut(s) 207, 232, 240, 355
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 2 cut(s) 74, 493
HpyCH4III ACNGT 2 cut(s) 286, 402
HpyCH4V TGCA 4 cut(s) 4, 56, 245, 379
HpyF3I CTNAG 2 cut(s) 90, 141
Hsp92II CATG 3 cut(s) 49, 196, 383
KspAI GTTAAC 1 cut(s) 240
Kzo9I GATC 3 cut(s) 223, 347, 474
LmnI GCTCC 1 cut(s) 60
Lsp1109I GCAGC 1 cut(s) 313
MabI ACCWGGT 1 cut(s) 122
MaeIII GTNAC 3 cut(s) 12, 41, 280
MalI GATC 3 cut(s) 225, 349, 476
MboI GATC 3 cut(s) 223, 347, 474
MboII GAAGA 4 cut(s) 46, 520, 523, 526
MluCI AATT 4 cut(s) 180, 428, 487, 523
MlyI GAGTC 2 cut(s) 202, 355
MmeI TCCRAC 2 cut(s) 268, 450
MnlI CCTC 6 cut(s) 99, 124, 127, 271, 284, 496
MseI TTAA 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
NdeII GATC 3 cut(s) 223, 347, 474
NlaIII CATG 3 cut(s) 49, 196, 383
NlaIV GGNNCC 1 cut(s) 62
NmuCI GTSAC 2 cut(s) 12, 280
NspI RCATGY 1 cut(s) 383
PaeI GCATGC 1 cut(s) 383
PflMI CCANNNNNTGG 1 cut(s) 274
PkrI GCNGC 2 cut(s) 328, 385
PleI GAGTC 2 cut(s) 202, 355
PpsI GAGTC 2 cut(s) 202, 355
Psp6I CCWGG 1 cut(s) 122
PspFI CCCAGC 1 cut(s) 411
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 62
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
SalI GTCGAC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 2 cut(s) 327, 384
Sau3AI GATC 3 cut(s) 223, 347, 474
SchI GAGTC 2 cut(s) 202, 355
ScrFI CCNGG 1 cut(s) 124
SexAI ACCWGGT 1 cut(s) 122
SfcI CTRYAG 1 cut(s) 232
SphI GCATGC 1 cut(s) 383
Sse9I AATT 4 cut(s) 180, 428, 487, 523
SsiI CCGC 4 cut(s) 307, 329, 334, 384
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 2 cut(s) 286, 402
TaqI TCGA 3 cut(s) 206, 426, 477
TasI AATT 4 cut(s) 180, 428, 487, 523
TauI GCSGC 1 cut(s) 386
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 3 cut(s) 21, 178, 393
TseFI GTSAC 2 cut(s) 12, 280
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 2 cut(s) 12, 280
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 3 cut(s) 21, 178, 393
Van91I CCANNNNNTGG 1 cut(s) 274
XapI RAATTY 1 cut(s) 487
XceI RCATGY 1 cut(s) 383
XmiI GTMKAC 3 cut(s) 206, 231, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.