FvH4_4g27460

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000189
Physical Location & Seq
Reverse (-)
28456736 .. 28459206
2471 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27460.t1

Sequence Viewer

Length: 867 bp
ATGCGTGTTGATGAAGAAGATGAACTAGGAGTAGGAGGAGGAGGAGGAGGAGGAGAAATCACCTACGGCGCAGTGACGGTGGAGGCTTTGCCGGAGGGATGCATAGCCAACATCATCTCTCTGACGACTCCTCCCGATGCGTGCCGCCTGTTGTCGGTTTCGAGGTGCTTCCCGTCAGTCGCTGAATCCGACACGGTTTGGAGCATGTTCCTGCCGCCGGAGATTCCCACCATCCTATCTCACTCGGGGCCTGACGTGCACAATTGCCGATCCAAATCCAAGGAGTTCTACCTCGCTCTCTGCGACAATCCGGTGCTCATCGACGATGGCAAAATGAGCTTTTCACTAGACAAATGGAGTGGGAAAAAGTGTTACATGGTAGCTGCAAGAGACCTTGTGATTGTTTGGGCCGATGCTCCTAACTATTGGAAATGGATTTCTCTGCCTAATTCCAGGTTTGAAGAGGTTGCTGAGCTTGTTAGTGTTTGCTGGCTTGAAATCCGTGGCAAAATTGACACTCGATTACTGTCCCCCTTGACTATGTACAAAGCTTACCTTGTGTTCAAGTCAACAACAACGGCTTATGTATTTGACTACCAACCTACAGAGATTGTGCCGGGGCGTGTTGGTATATTCCGCAGAAGCCGCATTTTGGGTCTGCAAGTGTCTCAGCCCAGAGAGATCAATGATAATCAATACCCGAAGGAAAGAGCAGATGGGTGGTTGGAGATTGGGCTGGGTGAGTTCTTATGTGAAGGAGAAGGTGGTGGGGAGTTGGAAATGACTTGCTTACAAACCAGGGGTGGTCAGTGGAAGGGTGGTCTTATTGTTCAAGGCATTGAGGTTAGCCCGAACAAGAAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

289

Amino Acids

31.82

Weight (kDa)

4.95

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 122 - 284 8.2e-51 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 145, 215, 637, 646
AclWI GGATC 1 cut(s) 264
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 3 cut(s) 154, 217, 652
AgsI TTSAA 4 cut(s) 461, 497, 565, 833
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 2 cut(s) 452, 797
AluBI AGCT 4 cut(s) 339, 383, 475, 551
AluI AGCT 4 cut(s) 339, 383, 475, 551
Alw21I GWGCWC 2 cut(s) 261, 318
Alw26I GTCTC 2 cut(s) 384, 672
Alw44I GTGCAC 1 cut(s) 257
AlwI GGATC 1 cut(s) 264
AlwNI CAGNNNCTG 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 3 cut(s) 248, 408, 861
ApaLI GTGCAC 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 383
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 248, 408
AsuC2I CCSGG 1 cut(s) 618
AsuHPI GGTGA 2 cut(s) 52, 752
AvaI CYCGRG 1 cut(s) 244
BaeGI GKGCMC 1 cut(s) 261
Bbv12I GWGCWC 2 cut(s) 261, 318
BbvI GCAGC 1 cut(s) 370
BccI CCATC 3 cut(s) 239, 320, 710
BceAI ACGGC 2 cut(s) 82, 594
BciT130I CCWGG 2 cut(s) 454, 799
BcnI CCSGG 1 cut(s) 618
BcoDI GTCTC 2 cut(s) 384, 672
BfaI CTAG 3 cut(s) 26, 347, 865
BfmI CTRYAG 1 cut(s) 603
BisI GCNGC 4 cut(s) 145, 215, 384, 646
BlpI GCTNAGC 1 cut(s) 471
BlsI GCNGC 4 cut(s) 146, 216, 385, 647
Bme1390I CCNGG 3 cut(s) 454, 618, 799
BmeT110I CYCGRG 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 2 cut(s) 248, 408
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 3 cut(s) 454, 618, 799
BmsI GCATC 3 cut(s) 89, 127, 403
Bpu1102I GCTNAGC 1 cut(s) 471
BpuMI CCSGG 1 cut(s) 618
BsaBI GATNNNNATC 1 cut(s) 274
BsaI GGTCTC 1 cut(s) 384
BsaJI CCNNGG 4 cut(s) 279, 502, 617, 798
BsaWI WCCGGW 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 217, 652
Bse8I GATNNNNATC 1 cut(s) 274
BseBI CCWGG 2 cut(s) 454, 799
BseDI CCNNGG 4 cut(s) 279, 502, 617, 798
BseGI GGATG 2 cut(s) 104, 231
BseJI GATNNNNATC 1 cut(s) 274
BseLI CCNNNNNNNGG 3 cut(s) 154, 217, 652
BseMII CTCAG 2 cut(s) 462, 683
BseRI GAGGAG 7 cut(s) 51, 54, 57, 60, 63, 66, 120
BseSI GKGCMC 1 cut(s) 261
BseXI GCAGC 1 cut(s) 370
BseYI CCCAGC 1 cut(s) 736
BshFI GGCC 3 cut(s) 250, 410, 863
BsiHKAI GWGCWC 2 cut(s) 261, 318
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 4 cut(s) 92, 218, 311, 617
BslFI GGGAC 1 cut(s) 514
BslI CCNNNNNNNGG 3 cut(s) 154, 217, 652
BsmAI GTCTC 2 cut(s) 384, 672
BsmFI GGGAC 1 cut(s) 514
BsnI GGCC 3 cut(s) 250, 410, 863
Bso31I GGTCTC 1 cut(s) 384
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 2 cut(s) 261, 318
Bsp1407I TGTACA 1 cut(s) 543
Bsp143I GATC 2 cut(s) 269, 681
Bsp1720I GCTNAGC 1 cut(s) 471
BspACI CCGC 4 cut(s) 145, 215, 637, 646
BspANI GGCC 3 cut(s) 250, 410, 863
BspCNI CTCAG 2 cut(s) 463, 682
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 1 cut(s) 264
BspTNI GGTCTC 1 cut(s) 384
BsrGI TGTACA 1 cut(s) 543
BssECI CCNNGG 4 cut(s) 279, 502, 617, 798
BssMI GATC 2 cut(s) 269, 681
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 2 cut(s) 454, 799
Bst4CI ACNGT 3 cut(s) 79, 196, 528
Bst6I CTCTTC 1 cut(s) 456
BstAUI TGTACA 1 cut(s) 543
BstC8I GCNNGC 2 cut(s) 142, 491
BstDEI CTNAG 2 cut(s) 471, 669
BstDSI CCRYGG 1 cut(s) 502
BstF5I GGATG 2 cut(s) 104, 231
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 2 cut(s) 272, 684
BstMAI GTCTC 2 cut(s) 384, 672
BstMBI GATC 2 cut(s) 269, 681
BstMWI GCNNNNNNNGC 3 cut(s) 256, 336, 645
BstNI CCWGG 2 cut(s) 454, 799
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 3 cut(s) 452, 616, 797
BstSFI CTRYAG 1 cut(s) 603
BstSLI GKGCMC 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 370
BsuRI GGCC 3 cut(s) 250, 410, 863
BtgI CCRYGG 1 cut(s) 502
BtrI CACGTC 1 cut(s) 256
BtsCI GGATG 2 cut(s) 104, 231
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 78, 815
Cac8I GCNNGC 2 cut(s) 142, 491
CaiI CAGNNNCTG 1 cut(s) 182
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 248, 408
Csp6I GTAC 1 cut(s) 544
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 2 cut(s) 205, 376
CviQI GTAC 1 cut(s) 544
DdeI CTNAG 2 cut(s) 471, 669
DpnI GATC 2 cut(s) 271, 683
DpnII GATC 2 cut(s) 269, 681
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Eco130I CCWWGG 1 cut(s) 279
Eco147I AGGCCT 1 cut(s) 863
Eco31I GGTCTC 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 248
EcoRII CCWGG 2 cut(s) 452, 797
EcoT14I CCWWGG 1 cut(s) 279
EcoT22I ATGCAT 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 2 cut(s) 208, 379
FaiI YATR 7 cut(s) 104, 206, 377, 542, 585, 632, 751
FalI AAGNNNNNCTT 2 cut(s) 540, 572
FaqI GGGAC 1 cut(s) 514
FatI CATG 2 cut(s) 204, 375
Fnu4HI GCNGC 4 cut(s) 145, 215, 384, 646
FokI GGATG 2 cut(s) 111, 218
Fsp4HI GCNGC 4 cut(s) 145, 215, 384, 646
FspBI CTAG 3 cut(s) 26, 347, 865
GlaI GCGC 1 cut(s) 70
GluI GCNGC 4 cut(s) 145, 215, 384, 646
GsaI CCCAGC 1 cut(s) 740
HaeIII GGCC 3 cut(s) 250, 410, 863
HapII CCGG 4 cut(s) 92, 218, 311, 617
HhaI GCGC 1 cut(s) 71
Hin1II CATG 2 cut(s) 208, 379
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HincII GTYRAC 1 cut(s) 570
HindII GTYRAC 1 cut(s) 570
HindIII AAGCTT 1 cut(s) 549
HinfI GANTC 3 cut(s) 127, 185, 223
HpaII CCGG 4 cut(s) 92, 218, 311, 617
HphI GGTGA 2 cut(s) 52, 752
Hpy166II GTNNAC 2 cut(s) 259, 570
Hpy188I TCNGA 2 cut(s) 123, 190
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 2 cut(s) 259, 570
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 5 cut(s) 697, 749, 755, 808, 853
HpyCH4III ACNGT 3 cut(s) 79, 196, 528
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 4 cut(s) 102, 259, 386, 661
HpyF10VI GCNNNNNNNGC 3 cut(s) 256, 336, 645
HpyF3I CTNAG 2 cut(s) 471, 669
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 2 cut(s) 208, 379
HspAI GCGC 1 cut(s) 69
Kzo9I GATC 2 cut(s) 269, 681
LmnI GCTCC 2 cut(s) 201, 421
Lsp1109I GCAGC 1 cut(s) 370
LweI GCATC 3 cut(s) 89, 127, 403
MaeI CTAG 3 cut(s) 26, 347, 865
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 73, 371
MalI GATC 2 cut(s) 271, 683
MboI GATC 2 cut(s) 269, 681
MboII GAAGA 3 cut(s) 26, 29, 473
MfeI CAATTG 1 cut(s) 262
MhlI GDGCHC 2 cut(s) 261, 318
MluCI AATT 3 cut(s) 262, 448, 510
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 3 cut(s) 213, 705, 756
Mph1103I ATGCAT 1 cut(s) 104
MspI CCGG 4 cut(s) 92, 218, 311, 617
MspR9I CCNGG 3 cut(s) 454, 618, 799
MunI CAATTG 1 cut(s) 262
MvaI CCWGG 2 cut(s) 454, 799
MwoI GCNNNNNNNGC 3 cut(s) 256, 336, 645
NciI CCSGG 1 cut(s) 618
NdeII GATC 2 cut(s) 269, 681
NlaIII CATG 2 cut(s) 208, 379
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 1 cut(s) 73
NsiI ATGCAT 1 cut(s) 104
NspI RCATGY 1 cut(s) 208
PceI AGGCCT 1 cut(s) 863
PcsI WCGNNNNNNNCGW 2 cut(s) 186, 300
PfeI GAWTC 2 cut(s) 185, 223
PkrI GCNGC 4 cut(s) 146, 216, 385, 647
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 452, 797
PspFI CCCAGC 1 cut(s) 736
PspGI CCWGG 2 cut(s) 452, 797
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 2 cut(s) 248, 408
PstNI CAGNNNCTG 1 cut(s) 182
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
SatI GCNGC 4 cut(s) 145, 215, 384, 646
Sau3AI GATC 2 cut(s) 269, 681
Sau96I GGNCC 2 cut(s) 248, 408
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 3 cut(s) 454, 618, 799
SduI GDGCHC 2 cut(s) 261, 318
SfaNI GCATC 3 cut(s) 89, 127, 403
SfcI CTRYAG 1 cut(s) 603
Sse9I AATT 3 cut(s) 262, 448, 510
SseBI AGGCCT 1 cut(s) 863
SsiI CCGC 4 cut(s) 145, 215, 637, 646
SspMI CTAG 3 cut(s) 26, 347, 865
StuI AGGCCT 1 cut(s) 863
StyD4I CCNGG 3 cut(s) 452, 616, 797
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 3 cut(s) 79, 196, 528
TaiI ACGT 1 cut(s) 258
TaqI TCGA 3 cut(s) 161, 321, 520
TasI AATT 3 cut(s) 262, 448, 510
TatI WGTACW 1 cut(s) 543
TauI GCSGC 3 cut(s) 147, 217, 648
TfiI GAWTC 2 cut(s) 185, 223
TscAI CASTG 2 cut(s) 78, 815
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 1 cut(s) 383
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 2 cut(s) 27, 36
TspGWI ACGGA 1 cut(s) 491
TspRI CASTG 2 cut(s) 78, 815
VneI GTGCAC 1 cut(s) 257
XceI RCATGY 1 cut(s) 208
XspI CTAG 3 cut(s) 26, 347, 865
Zsp2I ATGCAT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.