Rh3BG026800

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000189
Physical Location & Seq
Forward (+)
1784448 .. 1785997
1550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG026800.1

Sequence Viewer

Length: 537 bp
ATGGATCTGCACCAGTTACCGGAGGGCTGCATAGCCAAGATAGTATCGTTGACGACTCCTGAAGATGCCTGCCGCCTGTCGTTACTCTTCCGGCGAATCTGGATTATTGGCCGCCAGTTCCAAGAAGGAGGCAACAAACCTGTCCTCATCAACGACGGTAAATTGAGCTTTTCACTGGACAAATGGAGTGGGAAAAAATGTTACATGATATCTGCAAGAGAGCTTGGTATTGTCTGGGGCGATACTCCCCAGTATTGGAGATGGACTTCTCATCCTGAATCCAGGGCTTTTGGATTTGAACACGTACGTGCTGAGGTCACTATAGGTCTGGAGGGAGGAGAACAGAGTAAACAGACTCTGGTTTTTCCCAACGAAGGGGAGAGACCCGGGTGGTTGGAGATTGAGTTGGGCGAGTTTTTCTGTGAAGGGGGAGAAGATGGGCTATTAAAATTGCATTGTTTGGCGAATGAGGCTAATAATGGGAGGAGTGGTCTTGTTGTTCAAGGCATTGAGGTCAGGCCTAAGAGGAACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

178

Amino Acids

20.05

Weight (kDa)

5.85

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 65 - 95 1.1e-10 Phloem protein 2
PP2 PF14299 96 - 174 1.7e-10 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 73, 112
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 109
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 4 cut(s) 19, 255, 374, 375
AflIII ACRYGT 1 cut(s) 301
AgsI TTSAA 2 cut(s) 299, 503
AjnI CCWGG 1 cut(s) 281
AleI CACNNNNGTG 1 cut(s) 306
AluBI AGCT 2 cut(s) 168, 223
AluI AGCT 2 cut(s) 168, 223
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 358
Ama87I CYCGRG 1 cut(s) 386
AoxI GGCC 2 cut(s) 109, 518
ApeKI GCWGC 1 cut(s) 27
AsuC2I CCSGG 2 cut(s) 387, 388
AvaI CYCGRG 1 cut(s) 386
BbvCI CCTCAGC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 14
BccI CCATC 2 cut(s) 255, 431
BciT130I CCWGG 1 cut(s) 283
BcnI CCSGG 2 cut(s) 387, 388
BcoDI GTCTC 1 cut(s) 376
BfaI CTAG 1 cut(s) 535
BfmI CTRYAG 1 cut(s) 321
BisI GCNGC 3 cut(s) 28, 73, 112
BlsI GCNGC 3 cut(s) 29, 74, 113
Bme1390I CCNGG 3 cut(s) 283, 387, 388
BmeT110I CYCGRG 1 cut(s) 386
BmrFI CCNGG 3 cut(s) 283, 387, 388
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 1 cut(s) 55
BmuI ACTGGG 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 350
Bpu10I CCTNAGC 1 cut(s) 312
BpuMI CCSGG 2 cut(s) 387, 388
BsaAI YACGTR 2 cut(s) 304, 308
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 282, 386
BsaWI WCCGGW 1 cut(s) 19
BsaXI ACNNNNNCTCC 4 cut(s) 389, 419, 475, 505
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 255, 374, 375
Bse1I ACTGG 4 cut(s) 13, 115, 180, 250
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 2 cut(s) 282, 386
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 4 cut(s) 19, 255, 374, 375
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 4 cut(s) 13, 115, 180, 250
BseRI GAGGAG 2 cut(s) 351, 499
BseXI GCAGC 1 cut(s) 14
BshFI GGCC 2 cut(s) 111, 520
BsiHKCI CYCGRG 1 cut(s) 386
BsiSI CCGG 3 cut(s) 20, 91, 387
BsiWI CGTACG 1 cut(s) 304
BslI CCNNNNNNNGG 4 cut(s) 19, 255, 374, 375
BsmAI GTCTC 1 cut(s) 376
BsnI GGCC 2 cut(s) 111, 520
Bso31I GGTCTC 1 cut(s) 376
BsoBI CYCGRG 1 cut(s) 386
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 2 cut(s) 73, 112
BspANI GGCC 2 cut(s) 111, 520
BspCNI CTCAG 1 cut(s) 304
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 376
BsrI ACTGG 4 cut(s) 13, 115, 180, 250
BssECI CCNNGG 2 cut(s) 282, 386
BssMI GATC 1 cut(s) 4
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 92
BstBAI YACGTR 2 cut(s) 304, 308
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 2 cut(s) 312, 522
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 470
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 3 cut(s) 281, 385, 386
BstSFI CTRYAG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 111, 520
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 70
CaiI CAGNNNCTG 1 cut(s) 358
Cfr9I CCCGGG 1 cut(s) 386
Csp6I GTAC 1 cut(s) 305
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CviAII CATG 1 cut(s) 205
CviJI RGCY 9 cut(s) 27, 35, 111, 168, 223, 287, 442, 473, 520
CviKI_1 RGCY 9 cut(s) 27, 35, 111, 168, 223, 287, 442, 473, 520
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 2 cut(s) 312, 522
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco147I AGGCCT 1 cut(s) 520
Eco31I GGTCTC 1 cut(s) 376
Eco32I GATATC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 81
Eco88I CYCGRG 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 281
EcoRV GATATC 1 cut(s) 210
FaeI CATG 1 cut(s) 208
FaiI YATR 3 cut(s) 32, 206, 323
FatI CATG 1 cut(s) 204
Fnu4HI GCNGC 3 cut(s) 28, 73, 112
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 3 cut(s) 28, 73, 112
FspBI CTAG 1 cut(s) 535
GluI GCNGC 3 cut(s) 28, 73, 112
GsuI CTGGAG 1 cut(s) 350
HaeIII GGCC 2 cut(s) 111, 520
HapII CCGG 3 cut(s) 20, 91, 387
Hin1II CATG 1 cut(s) 208
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 4 cut(s) 55, 96, 278, 355
HpaII CCGG 3 cut(s) 20, 91, 387
Hpy166II GTNNAC 2 cut(s) 51, 350
Hpy188III TCNNGA 4 cut(s) 59, 100, 275, 329
Hpy8I GTNNAC 2 cut(s) 51, 350
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 3 cut(s) 119, 368, 419
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 2 cut(s) 303, 307
HpyCH4V TGCA 4 cut(s) 10, 30, 215, 454
HpyF10VI GCNNNNNNNGC 1 cut(s) 470
HpyF3I CTNAG 2 cut(s) 312, 522
HpySE526I ACGT 2 cut(s) 303, 307
Hsp92II CATG 1 cut(s) 208
Kzo9I GATC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 14
LweI GCATC 1 cut(s) 55
MaeI CTAG 1 cut(s) 535
MaeII ACGT 2 cut(s) 303, 307
MaeIII GTNAC 4 cut(s) 15, 81, 200, 316
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 3 cut(s) 74, 79, 446
MflI RGATCY 1 cut(s) 4
MluCI AATT 2 cut(s) 161, 449
MlyI GAGTC 2 cut(s) 49, 349
MmeI TCCRAC 1 cut(s) 375
MseI TTAA 1 cut(s) 446
MslI CAYNNNNRTG 1 cut(s) 306
MspI CCGG 3 cut(s) 20, 91, 387
MspR9I CCNGG 3 cut(s) 283, 387, 388
MvaI CCWGG 1 cut(s) 283
MwoI GCNNNNNNNGC 1 cut(s) 470
NciI CCSGG 2 cut(s) 387, 388
NdeII GATC 1 cut(s) 4
NlaIII CATG 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 316
OliI CACNNNNGTG 1 cut(s) 306
PceI AGGCCT 1 cut(s) 520
PfeI GAWTC 2 cut(s) 96, 278
Pfl23II CGTACG 1 cut(s) 304
PkrI GCNGC 3 cut(s) 29, 74, 113
PleI GAGTC 2 cut(s) 49, 349
PpsI GAGTC 2 cut(s) 49, 349
Ppu21I YACGTR 2 cut(s) 304, 308
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspLI CGTACG 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 358
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 3 cut(s) 28, 73, 112
Sau3AI GATC 1 cut(s) 4
SchI GAGTC 2 cut(s) 49, 349
ScrFI CCNGG 3 cut(s) 283, 387, 388
SetI ASST 8 cut(s) 142, 170, 225, 306, 310, 318, 328, 516
SfaNI GCATC 1 cut(s) 55
SfcI CTRYAG 1 cut(s) 321
SmaI CCCGGG 1 cut(s) 388
SmiMI CAYNNNNRTG 1 cut(s) 306
Sse9I AATT 2 cut(s) 161, 449
SseBI AGGCCT 1 cut(s) 520
SsiI CCGC 2 cut(s) 73, 112
SspMI CTAG 1 cut(s) 535
StuI AGGCCT 1 cut(s) 520
StyD4I CCNGG 3 cut(s) 281, 385, 386
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 2 cut(s) 306, 310
TasI AATT 2 cut(s) 161, 449
TauI GCSGC 2 cut(s) 75, 114
TfiI GAWTC 2 cut(s) 96, 278
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 1 cut(s) 27
Tsp45I GTSAC 1 cut(s) 316
TspMI CCCGGG 1 cut(s) 386
TspRI CASTG 1 cut(s) 180
XmaI CCCGGG 1 cut(s) 386
XspI CTAG 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.