Rmu_co8361343.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8361343.1
OG0000189
Physical Location & Seq
Forward (+)
58 .. 669
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8361343.1_g000001.1.cds

Sequence Viewer

Length: 501 bp
atgcagagcttttcactggacaaatggagtgggaaaaaatgttacatgatatctgcaagagagcttggtattgtctggggcgatactccccagtattggagatggacttctcatcctgaatccaggtttccggaggtggctgagcttcttgttgtttgctggcttgaaatctatgggaaacttgaaacacgcttgctgtccccatcgactctgtacaaagcttaccttgtgttcaagtttactcgaagggcttttggatttgaacacgtacgtgctgaggtcactataggtctggagggaggagaacagagtaaacagactctggtttttcccaacgaaggggagagacccgggtggttggagattgagttgggtgagtttttctgtgaagggggagaagatgggctgttgaaattgcattgtttggcgaatgaggctaataatgggaggagtggtcttgttgttcaaggcattgaggtcaggcctaagaggaacaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

166

Amino Acids

19.0

Weight (kDa)

5.98

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 130
AfaI GTAC 2 cut(s) 215, 270
AfiI CCNNNNNNNGG 3 cut(s) 96, 338, 339
AflIII ACRYGT 1 cut(s) 265
AgsI TTSAA 6 cut(s) 167, 185, 235, 263, 412, 467
AjnI CCWGG 1 cut(s) 122
AleI CACNNNNGTG 1 cut(s) 270
AluBI AGCT 4 cut(s) 9, 64, 145, 221
AluI AGCT 4 cut(s) 9, 64, 145, 221
Alw26I GTCTC 1 cut(s) 340
AlwNI CAGNNNCTG 1 cut(s) 322
Ama87I CYCGRG 1 cut(s) 350
Aor13HI TCCGGA 1 cut(s) 130
AoxI GGCC 1 cut(s) 482
AsuC2I CCSGG 2 cut(s) 351, 352
AsuHPI GGTGA 1 cut(s) 386
AvaI CYCGRG 1 cut(s) 350
BbvCI CCTCAGC 1 cut(s) 276
BccI CCATC 3 cut(s) 96, 211, 395
BciT130I CCWGG 1 cut(s) 124
BcnI CCSGG 2 cut(s) 351, 352
BcoDI GTCTC 1 cut(s) 340
BfaI CTAG 1 cut(s) 499
BfmI CTRYAG 1 cut(s) 285
BlpI GCTNAGC 1 cut(s) 141
Bme1390I CCNGG 3 cut(s) 124, 351, 352
BmeT110I CYCGRG 1 cut(s) 350
BmrFI CCNGG 3 cut(s) 124, 351, 352
BmrI ACTGGG 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 314
Bpu10I CCTNAGC 1 cut(s) 276
Bpu1102I GCTNAGC 1 cut(s) 141
BpuMI CCSGG 2 cut(s) 351, 352
BsaAI YACGTR 2 cut(s) 268, 272
BsaI GGTCTC 1 cut(s) 340
BsaJI CCNNGG 1 cut(s) 350
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 4 cut(s) 353, 383, 439, 469
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 338, 339
Bse1I ACTGG 2 cut(s) 21, 91
BseAI TCCGGA 1 cut(s) 130
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 3 cut(s) 96, 338, 339
BseMII CTCAG 2 cut(s) 132, 267
BseNI ACTGG 2 cut(s) 21, 91
BseRI GAGGAG 2 cut(s) 315, 463
BshFI GGCC 1 cut(s) 484
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 2 cut(s) 131, 351
BsiWI CGTACG 1 cut(s) 268
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 3 cut(s) 96, 338, 339
BsmAI GTCTC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 1 cut(s) 484
Bso31I GGTCTC 1 cut(s) 340
BsoBI CYCGRG 1 cut(s) 350
Bsp13I TCCGGA 1 cut(s) 130
Bsp1407I TGTACA 1 cut(s) 213
Bsp1720I GCTNAGC 1 cut(s) 141
BspANI GGCC 1 cut(s) 484
BspCNI CTCAG 2 cut(s) 133, 268
BspEI TCCGGA 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 340
BsrGI TGTACA 1 cut(s) 213
BsrI ACTGG 2 cut(s) 21, 91
BssECI CCNNGG 1 cut(s) 350
Bst2UI CCWGG 1 cut(s) 124
BstAUI TGTACA 1 cut(s) 213
BstBAI YACGTR 2 cut(s) 268, 272
BstC8I GCNNGC 2 cut(s) 161, 194
BstDEI CTNAG 3 cut(s) 141, 276, 486
BstF5I GGATG 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 340
BstMWI GCNNNNNNNGC 1 cut(s) 434
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 3 cut(s) 122, 349, 350
BstSFI CTRYAG 1 cut(s) 285
BsuRI GGCC 1 cut(s) 484
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 14
Cac8I GCNNGC 2 cut(s) 161, 194
CaiI CAGNNNCTG 1 cut(s) 322
Cfr9I CCCGGG 1 cut(s) 350
Csp6I GTAC 2 cut(s) 214, 269
CspCI CAANNNNNGTGG 2 cut(s) 10, 45
CviAII CATG 1 cut(s) 46
CviQI GTAC 2 cut(s) 214, 269
DdeI CTNAG 3 cut(s) 141, 276, 486
Eco147I AGGCCT 1 cut(s) 484
Eco31I GGTCTC 1 cut(s) 340
Eco32I GATATC 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 122
EcoRV GATATC 1 cut(s) 51
FaeI CATG 1 cut(s) 49
FaiI YATR 3 cut(s) 47, 174, 287
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FaqI GGGAC 1 cut(s) 184
FatI CATG 1 cut(s) 45
FokI GGATG 1 cut(s) 99
FspBI CTAG 1 cut(s) 499
GsuI CTGGAG 1 cut(s) 314
HaeIII GGCC 1 cut(s) 484
HapII CCGG 2 cut(s) 131, 351
Hin1II CATG 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 219
HinfI GANTC 3 cut(s) 119, 208, 319
HpaII CCGG 2 cut(s) 131, 351
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 2 cut(s) 240, 314
Hpy188III TCNNGA 3 cut(s) 116, 131, 293
Hpy8I GTNNAC 2 cut(s) 240, 314
HpyAV CCTTC 3 cut(s) 240, 332, 383
HpyCH4IV ACGT 2 cut(s) 267, 271
HpyCH4V TGCA 3 cut(s) 4, 56, 418
HpyF10VI GCNNNNNNNGC 1 cut(s) 434
HpyF3I CTNAG 3 cut(s) 141, 276, 486
HpySE526I ACGT 2 cut(s) 267, 271
Hsp92II CATG 1 cut(s) 49
Kpn2I TCCGGA 1 cut(s) 130
MaeI CTAG 1 cut(s) 499
MaeII ACGT 2 cut(s) 267, 271
MaeIII GTNAC 2 cut(s) 41, 280
MboII GAAGA 1 cut(s) 410
MluCI AATT 1 cut(s) 413
MlyI GAGTC 2 cut(s) 202, 313
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 8 cut(s) 127, 271, 289, 293, 427, 441, 469, 483
MroI TCCGGA 1 cut(s) 130
MslI CAYNNNNRTG 1 cut(s) 270
MspI CCGG 2 cut(s) 131, 351
MspR9I CCNGG 3 cut(s) 124, 351, 352
MvaI CCWGG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 434
NciI CCSGG 2 cut(s) 351, 352
NlaIII CATG 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 280
OliI CACNNNNGTG 1 cut(s) 270
PceI AGGCCT 1 cut(s) 484
PfeI GAWTC 1 cut(s) 119
Pfl23II CGTACG 1 cut(s) 268
PleI GAGTC 2 cut(s) 202, 313
PpsI GAGTC 2 cut(s) 202, 313
Ppu21I YACGTR 2 cut(s) 268, 272
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspLI CGTACG 1 cut(s) 268
PstNI CAGNNNCTG 1 cut(s) 322
RsaI GTAC 2 cut(s) 215, 270
RsaNI GTAC 2 cut(s) 214, 269
RseI CAYNNNNRTG 1 cut(s) 270
SchI GAGTC 2 cut(s) 202, 313
ScrFI CCNGG 3 cut(s) 124, 351, 352
SfcI CTRYAG 1 cut(s) 285
SmaI CCCGGG 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 270
Sse9I AATT 1 cut(s) 413
SseBI AGGCCT 1 cut(s) 484
SspMI CTAG 1 cut(s) 499
StuI AGGCCT 1 cut(s) 484
StyD4I CCNGG 3 cut(s) 122, 349, 350
TaiI ACGT 2 cut(s) 270, 274
TaqI TCGA 2 cut(s) 206, 244
TasI AATT 1 cut(s) 413
TatI WGTACW 1 cut(s) 213
TfiI GAWTC 1 cut(s) 119
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
TspMI CCCGGG 1 cut(s) 350
TspRI CASTG 1 cut(s) 21
XmaI CCCGGG 1 cut(s) 350
XspI CTAG 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.