RchiOBHm_Chr2g0105801

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000189
Physical Location & Seq
Forward (+)
17040132 .. 17041084
953 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGGTCACCTGCGCGACATTCCGGACAGTGCTGGATCTGCAGGCGTTGCCCGAAGGGTGCATAGCCAACGTCATCTCATTCACAACACCTGGAGATGCGTGCAGGCTATCCTCGGTGTCCAAGATTTTCAGGTCGGCCGCAGAATGTGACGTGGTCTGGGACAAGTTTCTTCCCCCTGATATACACACGATCATATCCTGTTCTGTGTCTTCCTCTTCCGGCTTTTGGATCAAATCCAAGAAGGAGCTTTACCTTCATCTCTGCGACAATCCAATTAGCACGGGAAAGATAGTAAGTTCACGACACCTGCATGTTATTTTAGGCTTTAATTCACTGGACAAGTGGAGCGGAAAAAAATGCTATATGATATCTGCAAGGGCCCTCCAGATACTTGGGTCTGGTAGTCCTCAATTTTGGAGATGGATTTCTCTGCCCGACTCCAGATTTGAGGAGGTAGCTGAGCTTCTCGATTTTTTGTGGCTTGAAAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

164

Amino Acids

18.37

Weight (kDa)

7.59

Isoelectric Point (pI)

52.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 118 - 162 2.9e-14 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80110 AT2G02240 AT2G02250 AT2G02280 AT2G02300 AT2G02310 AT2G02320 AT2G02340 AT2G02350 AT2G02350 AT2G02360
fragaria_vesca FvH4_1g04390 FvH4_4g27460 FvH4_6g01013 FvH4_6g01014 FvH4_6g01020 FvH4_6g01030 FvH4_6g01090 FvH4_6g01090 FvH4_6g01110
malus_domestica MD04G1236300.v1.1 MD04G1237000.v1.1 MD04G1237100.v1.1 MD04G1237300.v1.1 MD04G1237400.v1.1 MD04G1237600.v1.1 MD04G1237700.v1.1 MD04G1239300.v1.1 MD12G1255400.v1.1 MD12G1255500.v1.1 MD12G1255600.v1.1
prunus_persica Prupe.6G356300_v2.0.a1
pyrus_communis pycom04g21010 pycom04g21080 pycom04g21090 pycom12g23410 pycom12g23420 pycom12g23470
rosa_chinensis RchiOBHm_Chr2g0090041 RchiOBHm_Chr2g0105801 RchiOBHm_Chr2g0168101 RchiOBHm_Chr2g0168151 RchiOBHm_Chr3g0448461 RchiOBHm_Chr3g0448471 RchiOBHm_Chr3g0448501 RchiOBHm_Chr3g0448511 RchiOBHm_Chr3g0448521 RchiOBHm_Chr3g0448621 RchiOBHm_Chr3g0450261 RchiOBHm_Chr3g0450281 RchiOBHm_Chr6g0255241
rosa_laevigata RLG00000014851 RLG00000016080 RLG00000017458 RLG00000023974 RLG00000025742 RLG00000025744 RLG00000025883 RLG00000025900 RLG00000025901 RLG00000025903 RLG00000025904
rosa_multiflora Rmu_co8313739.1_g000001 Rmu_co8361343.1_g000001 Rmu_co8363919.1_g000001 Rmu_co8385575.1_g000001 Rmu_co8448943.1_g000001 Rmu_sc0000082.1_g000049 Rmu_sc0002741.1_g000008 Rmu_sc0003116.1_g000039 Rmu_sc0003308.1_g000013 Rmu_sc0005298.1_g000006 Rmu_sc0005298.1_g000008 Rmu_sc0007766.1_g000003 Rmu_sc0011979.1_g000006 Rmu_sc0016252.1_g000001 Rmu_sc0023110.1_g000001 Rmu_sc0023110.1_g000002 Rmu_sc0023110.1_g000003 Rmu_sc0041893.1_g000001
rosa_roxburghii Rroxscaffold_2G00137910 Rroxscaffold_2G00151450 Rroxscaffold_6G00426700 Rroxscaffold_6G00426730 Rroxscaffold_6G00426740 Rroxscaffold_6G00426750 Rroxscaffold_6G00426760 Rroxscaffold_6G00426910 Rroxscaffold_6G00428000 Rroxscaffold_6G00428010
rosa_rugosa Rorug02G0004900 Rorug02G0130400 Rorug02G0130400 Rorug02G0612700 Rorug02G0612900 Rorug02G0613000 Rorug02G0613100 Rorug02G0613100 Rorug02G0614700 Rorug02G0614800 Rorug02G0614900 Rorug02G0626500
rosa_samantha Rh2BG049100 Rh2BG190800 Rh2BG613500 Rh2BG613800 Rh2CG051300 Rh2DG050700 Rh2DG187600 Rh2DG187700 Rh2DG402600 Rh3AG012100 Rh3AG012200 Rh3AG012300 Rh3AG012500 Rh3AG012600 Rh3AG012700 Rh3AG012800 Rh3AG013700 Rh3AG025900 Rh3AG026200 Rh3AG026500 Rh3AG026700 Rh3BG011900 Rh3BG012000 Rh3BG012100 Rh3BG012200 Rh3BG012300 Rh3BG013500 Rh3BG026600 Rh3BG026800 Rh3BG027200 Rh3BG027400 Rh3DG012300 Rh3DG012400 Rh3DG012500 Rh3DG012600 Rh3DG012700 Rh3DG012800 Rh3DG012900 Rh3DG014300 Rh3DG026500 Rh3DG026800 Rh3DG027100 Rh3DG027200 Rh3DG122000 Rh3DG282500 Rh5BG266700 Rh6BG370500 Rh7CG395700
rosa_wichuraiana Rw0G020400 Rw2G004010 Rw2G014220 Rw3G000940 Rw3G000950 Rw3G000960 Rw3G001010 Rw3G002090 Rw3G002100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 17, 315
Acc36I ACCTGC 2 cut(s) 17, 315
AccBSI CCGCTC 1 cut(s) 348
AccII CGCG 1 cut(s) 14
AccIII TCCGGA 1 cut(s) 21
AciI CCGC 2 cut(s) 138, 348
AclWI GGATC 2 cut(s) 42, 236
AcoI YGGCCR 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 1 cut(s) 485
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 3 cut(s) 247, 458, 463
AluI AGCT 3 cut(s) 247, 458, 463
AlwI GGATC 2 cut(s) 42, 236
Aor13HI TCCGGA 1 cut(s) 21
AoxI GGCC 2 cut(s) 135, 378
ApaI GGGCCC 1 cut(s) 382
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 2 cut(s) 378, 379
BaeGI GKGCMC 1 cut(s) 382
BaeI ACNNNNGTAYC 2 cut(s) 380, 413
BanII GRGCYC 1 cut(s) 382
BarI GAAGNNNNNNTAC 4 cut(s) 233, 265, 447, 479
BbsI GAAGAC 1 cut(s) 201
BccI CCATC 1 cut(s) 414
BciT130I CCWGG 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 38
BfuAI ACCTGC 2 cut(s) 17, 315
BisI GCNGC 1 cut(s) 138
BlpI GCTNAGC 1 cut(s) 459
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 90
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 378, 379
BmiI GGNNCC 1 cut(s) 380
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 201
BpmI CTGGAG 3 cut(s) 111, 368, 424
Bpu1102I GCTNAGC 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 339
BseAI TCCGGA 1 cut(s) 21
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 450
BseNI ACTGG 1 cut(s) 339
BseRI GAGGAG 1 cut(s) 464
BseSI GKGCMC 1 cut(s) 382
BseX3I CGGCCG 1 cut(s) 135
BsgI GTGCAG 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 14
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 137, 380
BsiEI CGRYCG 1 cut(s) 138
BsiSI CCGG 2 cut(s) 22, 219
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 2 cut(s) 137, 380
Bsp120I GGGCCC 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 382
Bsp13I TCCGGA 1 cut(s) 21
Bsp143I GATC 3 cut(s) 34, 189, 228
Bsp1720I GCTNAGC 1 cut(s) 459
BspACI CCGC 2 cut(s) 138, 348
BspANI GGCC 2 cut(s) 137, 380
BspCNI CTCAG 1 cut(s) 451
BspEI TCCGGA 1 cut(s) 21
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 380
BspMAI CTGCAG 1 cut(s) 42
BspMI ACCTGC 2 cut(s) 17, 315
BspPI GGATC 2 cut(s) 42, 236
BsrBI CCGCTC 1 cut(s) 348
BsrI ACTGG 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 3 cut(s) 34, 189, 228
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 220
BstAPI GCANNNNNTGC 1 cut(s) 46
BstC8I GCNNGC 3 cut(s) 42, 100, 104
BstDEI CTNAG 1 cut(s) 459
BstEII GGTNACC 1 cut(s) 4
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 3 cut(s) 37, 192, 231
BstMBI GATC 3 cut(s) 34, 189, 228
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 37, 46
BstNI CCWGG 1 cut(s) 90
BstNSI RCATGY 1 cut(s) 314
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 38
BstSLI GKGCMC 1 cut(s) 382
BstUI CGCG 1 cut(s) 14
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 34
BstXI CCANNNNNNTGG 1 cut(s) 392
BstYI RGATCY 1 cut(s) 34
BstZI CGGCCG 1 cut(s) 135
BsuRI GGCC 2 cut(s) 137, 380
BtrI CACGTC 1 cut(s) 151
BtsIMutI CAGTG 2 cut(s) 33, 332
BveI ACCTGC 2 cut(s) 17, 315
Cac8I GCNNGC 3 cut(s) 42, 100, 104
CfoI GCGC 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 378, 379
CviAII CATG 1 cut(s) 311
DdeI CTNAG 1 cut(s) 459
DpnI GATC 3 cut(s) 36, 191, 230
DpnII GATC 3 cut(s) 34, 189, 228
EaeI YGGCCR 1 cut(s) 135
EagI CGGCCG 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
EclXI CGGCCG 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 382
Eco32I GATATC 1 cut(s) 369
Eco52I CGGCCG 1 cut(s) 135
Eco91I GGTNACC 1 cut(s) 4
EcoO109I RGGNCCY 2 cut(s) 378, 379
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 88
EcoRV GATATC 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 382
FaeI CATG 1 cut(s) 314
FaiI YATR 6 cut(s) 62, 182, 194, 312, 363, 365
FaqI GGGAC 1 cut(s) 173
FatI CATG 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 138
FriOI GRGCYC 1 cut(s) 382
Fsp4HI GCNGC 1 cut(s) 138
GlaI GCGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 138
GsuI CTGGAG 3 cut(s) 111, 368, 424
HaeIII GGCC 2 cut(s) 137, 380
HapII CCGG 2 cut(s) 22, 219
HhaI GCGC 1 cut(s) 14
Hin1II CATG 1 cut(s) 314
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 1 cut(s) 437
HpaII CCGG 2 cut(s) 22, 219
Hpy166II GTNNAC 1 cut(s) 299
Hpy188III TCNNGA 5 cut(s) 22, 300, 385, 441, 467
Hpy8I GTNNAC 1 cut(s) 299
HpyAV CCTTC 3 cut(s) 47, 235, 263
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 2 cut(s) 69, 150
HpyCH4V TGCA 5 cut(s) 40, 60, 102, 310, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 46
HpyF3I CTNAG 1 cut(s) 459
HpySE526I ACGT 2 cut(s) 69, 150
Hsp92II CATG 1 cut(s) 314
HspAI GCGC 1 cut(s) 12
Kpn2I TCCGGA 1 cut(s) 21
Kzo9I GATC 3 cut(s) 34, 189, 228
LmnI GCTCC 2 cut(s) 244, 345
LweI GCATC 1 cut(s) 85
MaeII ACGT 2 cut(s) 69, 150
MaeIII GTNAC 2 cut(s) 4, 146
MalI GATC 3 cut(s) 36, 191, 230
MbiI CCGCTC 1 cut(s) 348
MboI GATC 3 cut(s) 34, 189, 228
MboII GAAGA 3 cut(s) 161, 201, 207
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 382
MluCI AATT 3 cut(s) 273, 328, 410
MlyI GAGTC 1 cut(s) 431
MnlI CCTC 6 cut(s) 121, 223, 392, 417, 442, 445
MroI TCCGGA 1 cut(s) 21
MseI TTAA 1 cut(s) 327
MslI CAYNNNNRTG 1 cut(s) 309
MspI CCGG 2 cut(s) 22, 219
MspR9I CCNGG 1 cut(s) 90
MvaI CCWGG 1 cut(s) 90
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 37, 46
NdeII GATC 3 cut(s) 34, 189, 228
NlaIII CATG 1 cut(s) 314
NlaIV GGNNCC 1 cut(s) 380
NmuCI GTSAC 2 cut(s) 4, 146
NspI RCATGY 1 cut(s) 314
PaqCI CACCTGC 2 cut(s) 17, 315
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 1 cut(s) 139
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
Psp6I CCWGG 1 cut(s) 88
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 380
PspOMI GGGCCC 1 cut(s) 378
PspPI GGNCC 2 cut(s) 378, 379
PstI CTGCAG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 152
RseI CAYNNNNRTG 1 cut(s) 309
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 3 cut(s) 34, 189, 228
Sau96I GGNCC 2 cut(s) 378, 379
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 90
SduI GDGCHC 1 cut(s) 382
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 309
Sse9I AATT 3 cut(s) 273, 328, 410
SsiI CCGC 2 cut(s) 138, 348
StyD4I CCNGG 1 cut(s) 88
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 2 cut(s) 72, 153
TaqI TCGA 1 cut(s) 468
TasI AATT 3 cut(s) 273, 328, 410
TauI GCSGC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 2 cut(s) 33, 339
TseFI GTSAC 2 cut(s) 4, 146
Tsp45I GTSAC 2 cut(s) 4, 146
TspDTI ATGAA 1 cut(s) 245
TspRI CASTG 2 cut(s) 33, 339
Tth111I GACNNNGTC 1 cut(s) 152
XceI RCATGY 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.