FvH4_1g14860

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000171
Physical Location & Seq
Forward (+)
8291871 .. 8293669
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14860.t2

Sequence Viewer

Length: 843 bp
ATGATGAAAATAGAGAATATGAGAGTGAAGCAATTTGTTGTGCCTTTTGCTTTGCTTGTTTGCTTGGTGACGATGTGTAGCAATAGTATCACAGTCACATCTGATCAATATCCAAGCCAAATCCTCAATGGGAAGAAGCAATTTGTGCTGGTTCATGGAGCCAATCACGGAGCTTGGTGTTGGTATAAATTGGCGACTCTATTGAACTCCACAGGTCACAATGTCACAGCACTAGACCTTGCAGCATCTGGGATTAACCCTATTAAGGTAGAGCAAGTTCATTCGTTCTCGGAGTACGTTGAGCCATTGATCACATTTTTGGGGTCTCTTGCGCCTAAGGAGAGGGTTATCCTAGTCGGCCACAGCTCGGGTGGAGCTGTCATATCATTTGCTATGGAGAGGTTCCCTGAGAGAATTGCTGTTGCTGTATATGCTAGTGCTGTGATGCCCGGTCCTTCTCTTAGTTACTTAACTATATCTGCCAAGCTTATTCCAAGATGGGTAAATTTTAATCGAGAAAAGCAAGGGTATCAGCTGTCACCTCCAGAGGATCTAACACTAGCATCGACATTGGTAAAACCTACCCCTACATTCAGTGAAGAAATAAAACTGACCGAGGAGAAGTACGGATTGGTTCCAAGAGTGTTCATCATGTCCGACCAAGACCTTACAATACAGAAGGATATACAAATGTGGATGATCAGGGAAAACCCCCCAAATGAAGTGAAAGTAATAAATGGTTCCGATCATATGGTCATGTTCTCTAGACCGCTGGAGCTGTTCTCCCACCTCCTCCAGATTGCTGAGAAATATTCACATGAAGATCATCATCATGGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

281

Amino Acids

31.46

Weight (kDa)

6.59

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 45 - 154 2.4e-12 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 48 - 260 3.7e-21 Alpha/beta hydrolase family
Abhydrolase_1 PF00561 48 - 158 3.7e-13 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 770
AclWI GGATC 1 cut(s) 558
AcoI YGGCCR 1 cut(s) 358
AcsI RAATTY 1 cut(s) 505
AfaI GTAC 2 cut(s) 296, 626
AfiI CCNNNNNNNGG 2 cut(s) 265, 367
AgsI TTSAA 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 614, 646
AluBI AGCT 6 cut(s) 173, 366, 377, 487, 535, 778
AluI AGCT 6 cut(s) 173, 366, 377, 487, 535, 778
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 1 cut(s) 558
AlwNI CAGNNNCTG 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 367
AoxI GGCC 1 cut(s) 358
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 505
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 452
AsuC2I CCSGG 1 cut(s) 450
AsuHPI GGTGA 2 cut(s) 79, 531
AvaI CYCGRG 1 cut(s) 367
AvaII GGWCC 1 cut(s) 452
AxyI CCTNAGG 1 cut(s) 336
BbvI GCAGC 1 cut(s) 254
BccI CCATC 1 cut(s) 492
BclI TGATCA 3 cut(s) 103, 309, 699
BcnI CCSGG 1 cut(s) 450
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 5 cut(s) 233, 353, 435, 560, 765
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 450
Bme18I GGWCC 1 cut(s) 452
BmeT110I CYCGRG 1 cut(s) 367
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 4 cut(s) 160, 404, 636, 742
BmrFI CCNGG 1 cut(s) 450
BmsI GCATC 3 cut(s) 254, 435, 572
BplI GAGNNNNNCTC 2 cut(s) 767, 799
BpmI CTGGAG 3 cut(s) 528, 779, 794
BpuMI CCSGG 1 cut(s) 450
BsaBI GATNNNNATC 2 cut(s) 108, 828
BsaI GGTCTC 1 cut(s) 330
BsaJI CCNNGG 1 cut(s) 615
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 367
Bse21I CCTNAGG 1 cut(s) 336
Bse8I GATNNNNATC 2 cut(s) 108, 828
BseDI CCNNGG 1 cut(s) 615
BseGI GGATG 1 cut(s) 702
BseJI GATNNNNATC 2 cut(s) 108, 828
BseLI CCNNNNNNNGG 2 cut(s) 265, 367
BseMII CTCAG 2 cut(s) 399, 795
BseRI GAGGAG 2 cut(s) 632, 782
BseXI GCAGC 1 cut(s) 254
BshFI GGCC 1 cut(s) 360
BsiHKCI CYCGRG 1 cut(s) 367
BsiSI CCGG 1 cut(s) 450
BslI CCNNNNNNNGG 2 cut(s) 265, 367
BsmAI GTCTC 1 cut(s) 330
BsnI GGCC 1 cut(s) 360
Bso31I GGTCTC 1 cut(s) 330
BsoBI CYCGRG 1 cut(s) 367
Bsp143I GATC 6 cut(s) 103, 309, 550, 699, 745, 823
BspACI CCGC 1 cut(s) 770
BspANI GGCC 1 cut(s) 360
BspCNI CTCAG 2 cut(s) 400, 796
BspLI GGNNCC 4 cut(s) 160, 404, 636, 742
BspPI GGATC 1 cut(s) 558
BspTNI GGTCTC 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 615
BssMI GATC 6 cut(s) 103, 309, 550, 699, 745, 823
Bst4CI ACNGT 1 cut(s) 94
BstAPI GCANNNNNTGC 1 cut(s) 145
BstDEI CTNAG 4 cut(s) 336, 408, 461, 804
BstF5I GGATG 1 cut(s) 702
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 6 cut(s) 106, 312, 553, 702, 748, 826
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 6 cut(s) 103, 309, 550, 699, 745, 823
BstMWI GCNNNNNNNGC 2 cut(s) 145, 431
BstSCI CCNGG 1 cut(s) 448
BstV1I GCAGC 1 cut(s) 254
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
Bsu36I CCTNAGG 1 cut(s) 336
BsuRI GGCC 1 cut(s) 360
BtsCI GGATG 1 cut(s) 702
BtsIMutI CAGTG 1 cut(s) 601
CaiI CAGNNNCTG 1 cut(s) 248
CfoI GCGC 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 452
Csp6I GTAC 2 cut(s) 295, 625
CviAII CATG 5 cut(s) 155, 652, 757, 818, 833
CviQI GTAC 2 cut(s) 295, 625
DdeI CTNAG 4 cut(s) 336, 408, 461, 804
DpnI GATC 6 cut(s) 105, 311, 552, 701, 747, 825
DpnII GATC 6 cut(s) 103, 309, 550, 699, 745, 823
EaeI YGGCCR 1 cut(s) 358
Eco31I GGTCTC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 452
Eco81I CCTNAGG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 367
FaeI CATG 5 cut(s) 158, 655, 760, 821, 836
FatI CATG 5 cut(s) 154, 651, 756, 817, 832
FauNDI CATATG 1 cut(s) 750
FbaI TGATCA 3 cut(s) 103, 309, 699
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 1 cut(s) 709
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 5 cut(s) 233, 353, 435, 560, 765
GlaI GCGC 1 cut(s) 333
GluI GCNGC 1 cut(s) 243
GsuI CTGGAG 3 cut(s) 528, 779, 794
HaeIII GGCC 1 cut(s) 360
HapII CCGG 1 cut(s) 450
HhaI GCGC 1 cut(s) 334
Hin1II CATG 5 cut(s) 158, 655, 760, 821, 836
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 1 cut(s) 196
HpaII CCGG 1 cut(s) 450
HphI GGTGA 2 cut(s) 79, 531
Hpy188I TCNGA 4 cut(s) 103, 292, 658, 745
Hpy188III TCNNGA 4 cut(s) 515, 545, 765, 796
HpyAV CCTTC 2 cut(s) 465, 673
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 431
HpyF3I CTNAG 4 cut(s) 336, 408, 461, 804
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 5 cut(s) 158, 655, 760, 821, 836
HspAI GCGC 1 cut(s) 332
Ksp22I TGATCA 3 cut(s) 103, 309, 699
Kzo9I GATC 6 cut(s) 103, 309, 550, 699, 745, 823
LmnI GCTCC 4 cut(s) 158, 170, 374, 775
LpnPI CCDG 9 cut(s) 134, 198, 234, 420, 463, 558, 688, 758, 809
Lsp1109I GCAGC 1 cut(s) 254
LweI GCATC 3 cut(s) 254, 435, 572
MaeI CTAG 5 cut(s) 233, 353, 435, 560, 765
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 6 cut(s) 67, 94, 215, 223, 464, 537
MalI GATC 6 cut(s) 105, 311, 552, 701, 747, 825
MboI GATC 6 cut(s) 103, 309, 550, 699, 745, 823
MboII GAAGA 3 cut(s) 145, 611, 833
MflI RGATCY 1 cut(s) 550
MluCI AATT 5 cut(s) 32, 140, 188, 414, 505
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 1 cut(s) 681
MnlI CCTC 8 cut(s) 134, 336, 393, 541, 552, 610, 800, 803
MseI TTAA 4 cut(s) 255, 264, 470, 510
MslI CAYNNNNRTG 1 cut(s) 831
MspA1I CMGCKG 2 cut(s) 535, 772
MspI CCGG 1 cut(s) 450
MspR9I CCNGG 1 cut(s) 450
MwoI GCNNNNNNNGC 2 cut(s) 145, 431
NciI CCSGG 1 cut(s) 450
NdeI CATATG 1 cut(s) 750
NdeII GATC 6 cut(s) 103, 309, 550, 699, 745, 823
NlaIII CATG 5 cut(s) 158, 655, 760, 821, 836
NlaIV GGNNCC 4 cut(s) 160, 404, 636, 742
NmuCI GTSAC 5 cut(s) 67, 94, 215, 223, 537
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PspN4I GGNNCC 4 cut(s) 160, 404, 636, 742
PspPI GGNCC 1 cut(s) 452
PsrI GAACNNNNNNTAC 2 cut(s) 261, 293
PstNI CAGNNNCTG 1 cut(s) 248
PsuI RGATCY 1 cut(s) 550
PvuII CAGCTG 1 cut(s) 535
RsaI GTAC 2 cut(s) 296, 626
RsaNI GTAC 2 cut(s) 295, 625
RseI CAYNNNNRTG 1 cut(s) 831
SaqAI TTAA 4 cut(s) 255, 264, 470, 510
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 6 cut(s) 103, 309, 550, 699, 745, 823
Sau96I GGNCC 1 cut(s) 452
SchI GAGTC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 450
SfaNI GCATC 3 cut(s) 254, 435, 572
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 831
Sse9I AATT 5 cut(s) 32, 140, 188, 414, 505
SsiI CCGC 1 cut(s) 770
SspI AATATT 1 cut(s) 812
SspMI CTAG 5 cut(s) 233, 353, 435, 560, 765
StyD4I CCNGG 1 cut(s) 448
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 300
TaqI TCGA 2 cut(s) 514, 566
TaqII GACCGA 1 cut(s) 629
TasI AATT 5 cut(s) 32, 140, 188, 414, 505
Tru1I TTAA 4 cut(s) 255, 264, 470, 510
Tru9I TTAA 4 cut(s) 255, 264, 470, 510
TscAI CASTG 1 cut(s) 601
TseFI GTSAC 5 cut(s) 67, 94, 215, 223, 537
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 5 cut(s) 67, 94, 215, 223, 537
TspDTI ATGAA 6 cut(s) 20, 143, 269, 637, 735, 834
TspGWI ACGGA 2 cut(s) 183, 642
TspRI CASTG 1 cut(s) 601
VpaK11BI GGWCC 1 cut(s) 452
XapI RAATTY 1 cut(s) 505
XbaI TCTAGA 1 cut(s) 764
XcmI CCANNNNNNNNNTGG 2 cut(s) 125, 368
XspI CTAG 5 cut(s) 233, 353, 435, 560, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.