RchiOBHm_Chr2g0104521

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000171
Physical Location & Seq
Reverse (-)
15878339 .. 15880194
1856 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47879

Sequence Viewer

Length: 864 bp
ATGGATCACATAATTAGAGGTAAGCACTTTGTGTTCTTTCTTTTATCTCTTAGCTTGGCAGCAACTACTTCCGGTGCTTCTTCTTCTTGCCAACTGAGCTCTTTCGGGAAGAAGCACTTTGTGCTGATTCATGGAGCATGTCAAGGAGCGTGGACTTGGTACAAGGTGGCAACTCTACTCAAACACTCGGGACACAATGTCACAGCTCTTGACTTGGGAGCATCCGGAATTAACCCGATCCAGGCACAGCAATTCCCTTCGCTCTCTGACTACATTGAACCGTTGAGAAAGCTCATGGTGTCTCTGCCGCCAGAGGAGAGGGTTATTCTCGTGGCTCATAGCATGGGTGGAGCTGTTATATCTATTTTCATGGAGAGGTTTCCTGAGAAGATTGCTGCTGCTGTTTATGTCACTGGTTTTATGTCCGGACCTACTCTCAATTACTCCACTATTTTTACAGAGATTAACAAAAAGCTGGATTATATGGACTCTCAGTACAGATATGATGCAGGGCCTAACAATCCTGCAACGTCCTTCCTCACCGGGCCCATGGTCTTAGCCTCAAAATTCTACCAGCTCTCCCCACCTGAGGATTTAACACTAAGTTTGTCAGTAATGAGGTTTTCTCCTCTCTATAATTATGATGTGATAAAGCTCACCGAGGAGAAATATGGGTCGGTTCCAAGAGTATTCATCGTGGCGGAACAAGATCATGCAATAGTCTTGGACGTGCAAAATTTTATGATAAAGAACAATCCACCAAATGAAGTCAAAGTGATCAATGGTTCTGATCACATGGTTATGCTCTGTAGACCGGTGGAGTTGTTTTCCCACCTCCAGGATATTGCTGAGAAATATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

287

Amino Acids

32.01

Weight (kDa)

6.55

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 38 - 146 1.8e-11 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 39 - 269 7.7e-17 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 40 - 270 2.6e-17 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 811
AccIII TCCGGA 2 cut(s) 224, 425
AciI CCGC 2 cut(s) 308, 701
AclWI GGATC 2 cut(s) 12, 232
AcsI RAATTY 2 cut(s) 566, 736
AdeI CACNNNGTG 2 cut(s) 31, 121
AfaI GTAC 2 cut(s) 161, 497
AfiI CCNNNNNNNGG 3 cut(s) 241, 589, 838
AgeI ACCGGT 1 cut(s) 814
AgsI TTSAA 1 cut(s) 278
AhdI GACNNNNNGTC 1 cut(s) 197
AjiI CACGTC 1 cut(s) 730
AjnI CCWGG 2 cut(s) 240, 837
AluBI AGCT 8 cut(s) 54, 99, 206, 292, 353, 475, 577, 655
AluI AGCT 8 cut(s) 54, 99, 206, 292, 353, 475, 577, 655
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 1 cut(s) 306
AlwI GGATC 2 cut(s) 12, 232
Ama87I CYCGRG 1 cut(s) 187
Aor13HI TCCGGA 2 cut(s) 224, 425
AoxI GGCC 2 cut(s) 512, 545
ApaI GGGCCC 1 cut(s) 549
ApeKI GCWGC 3 cut(s) 59, 395, 398
ApoI RAATTY 2 cut(s) 566, 736
AsiGI ACCGGT 1 cut(s) 814
AspS9I GGNCC 4 cut(s) 428, 512, 545, 546
AsuC2I CCSGG 1 cut(s) 544
AsuHPI GGTGA 2 cut(s) 532, 649
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 1 cut(s) 428
AxyI CCTNAGG 1 cut(s) 588
BaeGI GKGCMC 1 cut(s) 549
BanII GRGCYC 2 cut(s) 101, 549
BauI CACGAG 1 cut(s) 329
Bbv12I GWGCWC 1 cut(s) 101
BbvI GCAGC 3 cut(s) 71, 382, 385
BciT130I CCWGG 2 cut(s) 242, 839
BclI TGATCA 2 cut(s) 777, 790
BcnI CCSGG 1 cut(s) 544
BcoDI GTCTC 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 808
BisI GCNGC 4 cut(s) 60, 308, 396, 399
BlsI GCNGC 4 cut(s) 61, 309, 397, 400
Bme1390I CCNGG 3 cut(s) 242, 544, 839
Bme18I GGWCC 1 cut(s) 428
BmeRI GACNNNNNGTC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 187
BmgBI CACGTC 1 cut(s) 730
BmgT120I GGNCC 4 cut(s) 428, 512, 545, 546
BmiI GGNNCC 2 cut(s) 547, 681
BmrFI CCNGG 3 cut(s) 242, 544, 839
BmsI GCATC 2 cut(s) 230, 496
BplI GAGNNNNNCTC 2 cut(s) 610, 642
BpmI CTGGAG 1 cut(s) 821
BpuMI CCSGG 1 cut(s) 544
BsaJI CCNNGG 2 cut(s) 549, 660
BsaWI WCCGGW 4 cut(s) 71, 224, 425, 814
BsaXI ACNNNNNCTCC 2 cut(s) 563, 593
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 589, 838
Bse118I RCCGGY 1 cut(s) 814
Bse1I ACTGG 1 cut(s) 418
Bse21I CCTNAGG 1 cut(s) 588
BseAI TCCGGA 2 cut(s) 224, 425
BseBI CCWGG 2 cut(s) 242, 839
BseDI CCNNGG 2 cut(s) 549, 660
BseGI GGATG 1 cut(s) 221
BseLI CCNNNNNNNGG 3 cut(s) 241, 589, 838
BseMII CTCAG 5 cut(s) 86, 375, 506, 579, 840
BseNI ACTGG 1 cut(s) 418
BseRI GAGGAG 3 cut(s) 329, 618, 677
BseSI GKGCMC 1 cut(s) 549
BseXI GCAGC 3 cut(s) 71, 382, 385
BshFI GGCC 2 cut(s) 514, 547
BshTI ACCGGT 1 cut(s) 814
BsiHKAI GWGCWC 1 cut(s) 101
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 5 cut(s) 72, 225, 426, 543, 815
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 3 cut(s) 241, 589, 838
BsmAI GTCTC 1 cut(s) 306
BsmFI GGGAC 1 cut(s) 204
BsnI GGCC 2 cut(s) 514, 547
BsoBI CYCGRG 1 cut(s) 187
Bsp120I GGGCCC 1 cut(s) 545
Bsp1286I GDGCHC 2 cut(s) 101, 549
Bsp13I TCCGGA 2 cut(s) 224, 425
Bsp143I GATC 5 cut(s) 4, 237, 709, 777, 790
Bsp19I CCATGG 1 cut(s) 549
BspACI CCGC 2 cut(s) 308, 701
BspANI GGCC 2 cut(s) 514, 547
BspCNI CTCAG 5 cut(s) 87, 376, 505, 580, 841
BspEI TCCGGA 2 cut(s) 224, 425
BspLI GGNNCC 2 cut(s) 547, 681
BspPI GGATC 2 cut(s) 12, 232
BsrFI RCCGGY 1 cut(s) 814
BsrI ACTGG 1 cut(s) 418
BssAI RCCGGY 1 cut(s) 814
BssECI CCNNGG 2 cut(s) 549, 660
BssMI GATC 5 cut(s) 4, 237, 709, 777, 790
BssSI CACGAG 1 cut(s) 329
BssT1I CCWWGG 1 cut(s) 549
Bst2BI CACGAG 1 cut(s) 329
Bst2UI CCWGG 2 cut(s) 242, 839
Bst4CI ACNGT 1 cut(s) 282
BstAPI GCANNNNNTGC 1 cut(s) 121
BstDEI CTNAG 8 cut(s) 50, 95, 384, 492, 556, 588, 602, 849
BstDSI CCRYGG 1 cut(s) 549
BstF5I GGATG 1 cut(s) 221
BstKTI GATC 5 cut(s) 7, 240, 712, 780, 793
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 5 cut(s) 4, 237, 709, 777, 790
BstMWI GCNNNNNNNGC 2 cut(s) 96, 121
BstNI CCWGG 2 cut(s) 242, 839
BstNSI RCATGY 1 cut(s) 141
BstSCI CCNGG 3 cut(s) 240, 542, 837
BstSFI CTRYAG 1 cut(s) 808
BstSLI GKGCMC 1 cut(s) 549
BstV1I GCAGC 3 cut(s) 71, 382, 385
Bsu36I CCTNAGG 1 cut(s) 588
BsuRI GGCC 2 cut(s) 514, 547
BtgI CCRYGG 1 cut(s) 549
BtrI CACGTC 1 cut(s) 730
BtsCI GGATG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 411
Cfr10I RCCGGY 1 cut(s) 814
Cfr13I GGNCC 4 cut(s) 428, 512, 545, 546
Csp6I GTAC 2 cut(s) 160, 496
CspAI ACCGGT 1 cut(s) 814
CspCI CAANNNNNGTGG 2 cut(s) 131, 166
CviAII CATG 8 cut(s) 131, 138, 295, 343, 370, 550, 713, 796
CviQI GTAC 2 cut(s) 160, 496
DdeI CTNAG 8 cut(s) 50, 95, 384, 492, 556, 588, 602, 849
DpnI GATC 5 cut(s) 6, 239, 711, 779, 792
DpnII GATC 5 cut(s) 4, 237, 709, 777, 790
DraIII CACNNNGTG 2 cut(s) 31, 121
DriI GACNNNNNGTC 1 cut(s) 197
Eam1105I GACNNNNNGTC 1 cut(s) 197
EciI GGCGGA 1 cut(s) 716
Ecl136II GAGCTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 549
Eco24I GRGCYC 2 cut(s) 101, 549
Eco47I GGWCC 1 cut(s) 428
Eco53kI GAGCTC 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 588
Eco88I CYCGRG 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 99
EcoO109I RGGNCCY 1 cut(s) 512
EcoRII CCWGG 2 cut(s) 240, 837
EcoT14I CCWWGG 1 cut(s) 549
EcoT38I GRGCYC 2 cut(s) 101, 549
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 8 cut(s) 134, 141, 298, 346, 373, 553, 716, 799
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 1 cut(s) 204
FatI CATG 8 cut(s) 130, 137, 294, 342, 369, 549, 712, 795
FbaI TGATCA 2 cut(s) 777, 790
FblI GTMKAC 1 cut(s) 811
Fnu4HI GCNGC 4 cut(s) 60, 308, 396, 399
FokI GGATG 1 cut(s) 208
FriOI GRGCYC 2 cut(s) 101, 549
Fsp4HI GCNGC 4 cut(s) 60, 308, 396, 399
GluI GCNGC 4 cut(s) 60, 308, 396, 399
GsuI CTGGAG 1 cut(s) 821
HaeIII GGCC 2 cut(s) 514, 547
HapII CCGG 5 cut(s) 72, 225, 426, 543, 815
Hin1II CATG 8 cut(s) 134, 141, 298, 346, 373, 553, 716, 799
HinfI GANTC 2 cut(s) 127, 488
HpaII CCGG 5 cut(s) 72, 225, 426, 543, 815
HphI GGTGA 2 cut(s) 532, 649
Hpy166II GTNNAC 2 cut(s) 153, 812
Hpy188I TCNGA 2 cut(s) 268, 790
Hpy188III TCNNGA 6 cut(s) 106, 189, 209, 225, 383, 426
Hpy8I GTNNAC 2 cut(s) 153, 812
HpyAV CCTTC 2 cut(s) 267, 544
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4IV ACGT 2 cut(s) 530, 729
HpyCH4V TGCA 4 cut(s) 509, 527, 716, 733
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 121
HpyF3I CTNAG 8 cut(s) 50, 95, 384, 492, 556, 588, 602, 849
HpySE526I ACGT 2 cut(s) 530, 729
Hsp92II CATG 8 cut(s) 134, 141, 298, 346, 373, 553, 716, 799
Kpn2I TCCGGA 2 cut(s) 224, 425
Ksp22I TGATCA 2 cut(s) 777, 790
Kzo9I GATC 5 cut(s) 4, 237, 709, 777, 790
LmnI GCTCC 4 cut(s) 134, 146, 218, 350
Lsp1109I GCAGC 3 cut(s) 71, 382, 385
LweI GCATC 2 cut(s) 230, 496
MaeII ACGT 2 cut(s) 530, 729
MaeIII GTNAC 2 cut(s) 199, 409
MalI GATC 5 cut(s) 6, 239, 711, 779, 792
MboI GATC 5 cut(s) 4, 237, 709, 777, 790
MboII GAAGA 4 cut(s) 72, 75, 121, 400
MhlI GDGCHC 2 cut(s) 101, 549
MluCI AATT 7 cut(s) 12, 228, 251, 439, 566, 637, 736
MlyI GAGTC 1 cut(s) 482
MroI TCCGGA 2 cut(s) 224, 425
MseI TTAA 4 cut(s) 231, 465, 596, 862
MslI CAYNNNNRTG 1 cut(s) 800
MspI CCGG 5 cut(s) 72, 225, 426, 543, 815
MspR9I CCNGG 3 cut(s) 242, 544, 839
MvaI CCWGG 2 cut(s) 242, 839
MwoI GCNNNNNNNGC 2 cut(s) 96, 121
NciI CCSGG 1 cut(s) 544
NcoI CCATGG 1 cut(s) 549
NdeII GATC 5 cut(s) 4, 237, 709, 777, 790
NlaIII CATG 8 cut(s) 134, 141, 298, 346, 373, 553, 716, 799
NlaIV GGNNCC 2 cut(s) 547, 681
NmuCI GTSAC 2 cut(s) 199, 409
NspI RCATGY 1 cut(s) 141
PfeI GAWTC 1 cut(s) 127
PfoI TCCNGGA 1 cut(s) 837
PinAI ACCGGT 1 cut(s) 814
PkrI GCNGC 4 cut(s) 61, 309, 397, 400
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
Psp124BI GAGCTC 1 cut(s) 101
Psp6I CCWGG 2 cut(s) 240, 837
PspGI CCWGG 2 cut(s) 240, 837
PspN4I GGNNCC 2 cut(s) 547, 681
PspOMI GGGCCC 1 cut(s) 545
PspPI GGNCC 4 cut(s) 428, 512, 545, 546
RsaI GTAC 2 cut(s) 161, 497
RsaNI GTAC 2 cut(s) 160, 496
RseI CAYNNNNRTG 1 cut(s) 800
SacI GAGCTC 1 cut(s) 101
SaqAI TTAA 4 cut(s) 231, 465, 596, 862
SatI GCNGC 4 cut(s) 60, 308, 396, 399
Sau3AI GATC 5 cut(s) 4, 237, 709, 777, 790
Sau96I GGNCC 4 cut(s) 428, 512, 545, 546
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 3 cut(s) 242, 544, 839
SduI GDGCHC 2 cut(s) 101, 549
SfaNI GCATC 2 cut(s) 230, 496
SfcI CTRYAG 1 cut(s) 808
SinI GGWCC 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 800
Sse9I AATT 7 cut(s) 12, 228, 251, 439, 566, 637, 736
SsiI CCGC 2 cut(s) 308, 701
SspI AATATT 1 cut(s) 857
SstI GAGCTC 1 cut(s) 101
StyD4I CCNGG 3 cut(s) 240, 542, 837
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 1 cut(s) 282
TaiI ACGT 2 cut(s) 533, 732
TasI AATT 7 cut(s) 12, 228, 251, 439, 566, 637, 736
TatI WGTACW 1 cut(s) 495
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 4 cut(s) 231, 465, 596, 862
Tru9I TTAA 4 cut(s) 231, 465, 596, 862
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 2 cut(s) 199, 409
TseI GCWGC 3 cut(s) 59, 395, 398
Tsp45I GTSAC 2 cut(s) 199, 409
TspDTI ATGAA 4 cut(s) 119, 358, 682, 780
TspRI CASTG 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 428
XapI RAATTY 2 cut(s) 566, 736
XceI RCATGY 1 cut(s) 141
XmiI GTMKAC 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.