FvH4_1g14891

Methylketone synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000171
Physical Location & Seq
Forward (+)
8340507 .. 8341967
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14891.t3

Sequence Viewer

Length: 648 bp
ATGGCGGCATCCGGAATAAACCCGACGCAGGTACAACAAGTCCATTCGTTCTCCGATTATGCTGAGCCGTTGATCGAATTCATGGCGTCTCTACCACCACTGCATAGAGTTATCCTAGTTGGCCACAGCATGGGTGGTGCCATCATATCTCTTGCCATGGAGATGTTCCCTCAGAGAATCTCAGTTGCTGTATTCGCCACCGCTGCCATGCCTGGCCCTAATCTCACTTACTCCGCTATATTTGCAGCGATATCCAGTGGTGTGAGTTTTATGGATTCTCAGTTTATATATGATGACGGGCAAAACAACCCTCCAACCTCGTTGGTGTTTGGGCCTAAATTCATGTCCTCTTCGTTCTACCAGCTCTCGCCTCCAGAGGACTTAACATTAGCGTTCTCATTGGTGAGACCTTCCCCACTCTTCAATGAAGAATTGAAACTCACAAAGCTGAAATACGGATTGGTTCGTAGAGTATTCATAGTAAGTGACCAAGACCGTGCTTTTACCGAGCAAGTAGTAAGGTTGATGATTACTAAAAATCCGCCAAATGAAGTGAAAGTGATCAATGGTTCAGATCACATGGTTATGGTCTCAAGACCAGTAGAGCTGTTCTCCCATCTCCAGAAGATTGCTGAGATGTACGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

216

Amino Acids

23.81

Weight (kDa)

5.71

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 137
AccB7I CCANNNNNTGG 1 cut(s) 130
AccIII TCCGGA 1 cut(s) 11
AciI CCGC 4 cut(s) 5, 201, 234, 542
AcoI YGGCCR 1 cut(s) 121
AcsI RAATTY 2 cut(s) 77, 338
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 2 cut(s) 33, 641
AfiI CCNNNNNNNGG 2 cut(s) 28, 130
AgsI TTSAA 2 cut(s) 424, 436
AjnI CCWGG 1 cut(s) 211
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
AluBI AGCT 3 cut(s) 364, 448, 607
AluI AGCT 3 cut(s) 364, 448, 607
Alw26I GTCTC 3 cut(s) 93, 400, 595
AlwNI CAGNNNCTG 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 11
AoxI GGCC 3 cut(s) 121, 214, 332
ApeKI GCWGC 2 cut(s) 203, 245
ApoI RAATTY 2 cut(s) 77, 338
AspS9I GGNCC 2 cut(s) 215, 332
AsuHPI GGTGA 1 cut(s) 415
BalI TGGCCA 1 cut(s) 123
BanI GGYRCC 1 cut(s) 137
BbvI GCAGC 2 cut(s) 190, 257
BccI CCATC 2 cut(s) 149, 624
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 213
BclI TGATCA 1 cut(s) 561
BcoDI GTCTC 3 cut(s) 93, 400, 595
BfaI CTAG 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 19
BisI GCNGC 3 cut(s) 6, 204, 246
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 3 cut(s) 7, 205, 247
Bme1390I CCNGG 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 215, 332
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 213
BmsI GCATC 1 cut(s) 17
BplI GAGNNNNNCTC 2 cut(s) 596, 628
BpmI CTGGAG 2 cut(s) 357, 605
Bpu1102I GCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 577
BsaHI GRCGYC 1 cut(s) 86
BsaI GGTCTC 2 cut(s) 400, 595
BsaJI CCNNGG 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 130
Bse1I ACTGG 2 cut(s) 255, 599
BseAI TCCGGA 1 cut(s) 11
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 28, 130
BseMII CTCAG 5 cut(s) 54, 185, 195, 293, 624
BseNI ACTGG 2 cut(s) 255, 599
BseXI GCAGC 2 cut(s) 190, 257
BshFI GGCC 3 cut(s) 123, 216, 334
BshNI GGYRCC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 2 cut(s) 28, 130
BsmAI GTCTC 3 cut(s) 93, 400, 595
BsmBI CGTCTC 1 cut(s) 93
BsnI GGCC 3 cut(s) 123, 216, 334
Bso31I GGTCTC 2 cut(s) 400, 595
Bsp13I TCCGGA 1 cut(s) 11
Bsp143I GATC 3 cut(s) 72, 561, 574
Bsp1720I GCTNAGC 1 cut(s) 63
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 4 cut(s) 5, 201, 234, 542
BspANI GGCC 3 cut(s) 123, 216, 334
BspCNI CTCAG 5 cut(s) 55, 184, 194, 292, 625
BspEI TCCGGA 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 137
BspTNI GGTCTC 2 cut(s) 400, 595
BsrI ACTGG 2 cut(s) 255, 599
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 3 cut(s) 72, 561, 574
BssNI GRCGYC 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 497
Bst6I CTCTTC 2 cut(s) 355, 425
BstACI GRCGYC 1 cut(s) 86
BstDEI CTNAG 5 cut(s) 63, 171, 181, 279, 633
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 8
BstKTI GATC 3 cut(s) 75, 564, 577
BstMAI GTCTC 3 cut(s) 93, 400, 595
BstMBI GATC 3 cut(s) 72, 561, 574
BstMWI GCNNNNNNNGC 3 cut(s) 194, 203, 242
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstV1I GCAGC 2 cut(s) 190, 257
BsuRI GGCC 3 cut(s) 123, 216, 334
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 8
BtsI GCAGTG 1 cut(s) 98
BtsIMutI CAGTG 2 cut(s) 98, 262
BveI ACCTGC 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 188
Cfr13I GGNCC 2 cut(s) 215, 332
CseI GACGC 2 cut(s) 34, 75
Csp6I GTAC 2 cut(s) 32, 640
CviAII CATG 6 cut(s) 82, 130, 157, 208, 343, 580
CviJI RGCY 7 cut(s) 67, 123, 216, 334, 364, 448, 607
CviKI_1 RGCY 7 cut(s) 67, 123, 216, 334, 364, 448, 607
CviQI GTAC 2 cut(s) 32, 640
DdeI CTNAG 5 cut(s) 63, 171, 181, 279, 633
DpnI GATC 3 cut(s) 74, 563, 576
DpnII GATC 3 cut(s) 72, 561, 574
EaeI YGGCCR 1 cut(s) 121
Eam1104I CTCTTC 2 cut(s) 355, 425
EarI CTCTTC 2 cut(s) 355, 425
EciI GGCGGA 1 cut(s) 531
Eco130I CCWWGG 1 cut(s) 156
Eco31I GGTCTC 2 cut(s) 400, 595
Eco32I GATATC 1 cut(s) 252
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 211
EcoRV GATATC 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 6 cut(s) 85, 133, 160, 211, 346, 583
FatI CATG 6 cut(s) 81, 129, 156, 207, 342, 579
FbaI TGATCA 1 cut(s) 561
Fnu4HI GCNGC 3 cut(s) 6, 204, 246
Fsp4HI GCNGC 3 cut(s) 6, 204, 246
FspBI CTAG 1 cut(s) 116
GluI GCNGC 3 cut(s) 6, 204, 246
GsuI CTGGAG 2 cut(s) 357, 605
HaeIII GGCC 3 cut(s) 123, 216, 334
HapII CCGG 1 cut(s) 12
HgaI GACGC 2 cut(s) 34, 75
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 6 cut(s) 85, 133, 160, 211, 346, 583
HinfI GANTC 2 cut(s) 177, 275
HpaII CCGG 1 cut(s) 12
HphI GGTGA 1 cut(s) 415
Hpy188I TCNGA 3 cut(s) 55, 174, 574
Hpy188III TCNNGA 4 cut(s) 12, 374, 594, 622
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 420
HpyCH4III ACNGT 1 cut(s) 497
HpyCH4V TGCA 2 cut(s) 103, 245
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 203, 242
HpyF3I CTNAG 5 cut(s) 63, 171, 181, 279, 633
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 6 cut(s) 85, 133, 160, 211, 346, 583
Kpn2I TCCGGA 1 cut(s) 11
Ksp22I TGATCA 1 cut(s) 561
Kzo9I GATC 3 cut(s) 72, 561, 574
LpnPI CCDG 9 cut(s) 14, 25, 198, 225, 268, 374, 387, 612, 635
Lsp1109I GCAGC 2 cut(s) 190, 257
LweI GCATC 1 cut(s) 17
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 485
MalI GATC 3 cut(s) 74, 563, 576
MboI GATC 3 cut(s) 72, 561, 574
MboII GAAGA 4 cut(s) 342, 412, 440, 637
MlsI TGGCCA 1 cut(s) 123
MluCI AATT 3 cut(s) 77, 338, 431
MluNI TGGCCA 1 cut(s) 123
MmeI TCCRAC 1 cut(s) 338
MnlI CCTC 6 cut(s) 180, 321, 328, 358, 370, 381
Mox20I TGGCCA 1 cut(s) 123
MroI TCCGGA 1 cut(s) 11
MscI TGGCCA 1 cut(s) 123
MseI TTAA 1 cut(s) 383
MslI CAYNNNNRTG 2 cut(s) 161, 584
Msp20I TGGCCA 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 3 cut(s) 194, 203, 242
NcoI CCATGG 1 cut(s) 156
NdeII GATC 3 cut(s) 72, 561, 574
NlaIII CATG 6 cut(s) 85, 133, 160, 211, 346, 583
NlaIV GGNNCC 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 485
PfeI GAWTC 2 cut(s) 177, 275
PflMI CCANNNNNTGG 1 cut(s) 130
PkrI GCNGC 3 cut(s) 7, 205, 247
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 2 cut(s) 215, 332
PstNI CAGNNNCTG 1 cut(s) 188
RsaI GTAC 2 cut(s) 33, 641
RsaNI GTAC 2 cut(s) 32, 640
RseI CAYNNNNRTG 2 cut(s) 161, 584
SaqAI TTAA 1 cut(s) 383
SatI GCNGC 3 cut(s) 6, 204, 246
Sau3AI GATC 3 cut(s) 72, 561, 574
Sau96I GGNCC 2 cut(s) 215, 332
ScrFI CCNGG 1 cut(s) 213
SetI ASST 7 cut(s) 33, 320, 366, 412, 450, 524, 609
SfaNI GCATC 1 cut(s) 17
SmiMI CAYNNNNRTG 2 cut(s) 161, 584
SmlI CTYRAG 1 cut(s) 592
SmoI CTYRAG 1 cut(s) 592
Sse9I AATT 3 cut(s) 77, 338, 431
SsiI CCGC 4 cut(s) 5, 201, 234, 542
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 211
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 497
TaqI TCGA 1 cut(s) 75
TasI AATT 3 cut(s) 77, 338, 431
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 177, 275
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TscAI CASTG 2 cut(s) 105, 262
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 2 cut(s) 203, 245
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 5 cut(s) 70, 331, 441, 466, 564
TspGWI ACGGA 1 cut(s) 471
TspRI CASTG 2 cut(s) 105, 262
Van91I CCANNNNNTGG 1 cut(s) 130
XapI RAATTY 2 cut(s) 77, 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.