Rh1AG103300

salicylic acid-binding protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
18041136 .. 18045074
3939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG103300.1

Sequence Viewer

Length: 183 bp
ATGGAGTCTCTGCCACAGCATGACAGGGTTATCCTAGTAGGGCACAACTTGGGTGGGCTCCCAATATCTCTTCTCATGGAGAGGTTCCCTCATAAAATTGCTGCTGCAGTTTTTGCCACCACTAGCATGCCTGGATTTAACACTAGCACTGATATTGGCGAGATGGGCGCCCCTGTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

60

Amino Acids

6.36

Weight (kDa)

5.76

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AcyI GRCGYC 1 cut(s) 168
AjnI CCWGG 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 101, 104
AspLEI GCGC 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 88, 91
BccI CCATC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 3 cut(s) 35, 123, 144
BfmI CTRYAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 171
BisI GCNGC 2 cut(s) 102, 105
BlsI GCNGC 2 cut(s) 103, 106
Bme1390I CCNGG 1 cut(s) 132
BmiI GGNNCC 3 cut(s) 59, 86, 169
BmrFI CCNGG 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 73, 105
BsaHI GRCGYC 1 cut(s) 168
BseBI CCWGG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 45
BseXI GCAGC 2 cut(s) 88, 91
BshNI GGYRCC 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 12
Bsp1286I GDGCHC 2 cut(s) 45, 60
BspHI TCATGA 1 cut(s) 179
BspLI GGNNCC 3 cut(s) 59, 86, 169
BspMAI CTGCAG 1 cut(s) 109
BspT107I GGYRCC 1 cut(s) 167
BssNI GRCGYC 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 168
BstAPI GCANNNNNTGC 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 128
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 12
BstMWI GCNNNNNNNGC 2 cut(s) 113, 165
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 45
BstV1I GCAGC 2 cut(s) 88, 91
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 128
CciI TCATGA 1 cut(s) 179
CfoI GCGC 1 cut(s) 170
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviAII CATG 4 cut(s) 20, 76, 127, 180
CviJI RGCY 1 cut(s) 58
CviKI_1 RGCY 1 cut(s) 58
DinI GGCGCC 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 60
EgeI GGCGCC 1 cut(s) 169
EheI GGCGCC 1 cut(s) 169
FaeI CATG 4 cut(s) 23, 79, 130, 183
FaiI YATR 5 cut(s) 21, 77, 93, 128, 181
FatI CATG 4 cut(s) 19, 75, 126, 179
Fnu4HI GCNGC 2 cut(s) 102, 105
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 2 cut(s) 102, 105
FspBI CTAG 3 cut(s) 35, 123, 144
GlaI GCGC 1 cut(s) 169
GluI GCNGC 2 cut(s) 102, 105
HaeII RGCGCY 1 cut(s) 171
HhaI GCGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 4 cut(s) 23, 79, 130, 183
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HinfI GANTC 1 cut(s) 5
Hpy188III TCNNGA 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 165
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 4 cut(s) 23, 79, 130, 183
HspAI GCGC 1 cut(s) 168
KasI GGCGCC 1 cut(s) 167
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 3 cut(s) 10, 117, 144
Lsp1109I GCAGC 2 cut(s) 88, 91
MaeI CTAG 3 cut(s) 35, 123, 144
MboII GAAGA 1 cut(s) 62
MhlI GDGCHC 2 cut(s) 45, 60
MluCI AATT 1 cut(s) 96
Mly113I GGCGCC 1 cut(s) 168
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 2 cut(s) 75, 99
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 113, 165
NarI GGCGCC 1 cut(s) 168
NlaIII CATG 4 cut(s) 23, 79, 130, 183
NlaIV GGNNCC 3 cut(s) 59, 86, 169
NspI RCATGY 1 cut(s) 130
PaeI GCATGC 1 cut(s) 130
PagI TCATGA 1 cut(s) 179
PkrI GCNGC 2 cut(s) 103, 106
PleI GAGTC 1 cut(s) 13
PluTI GGCGCC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 3 cut(s) 59, 86, 169
PstI CTGCAG 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 2 cut(s) 102, 105
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 2 cut(s) 45, 60
SetI ASST 1 cut(s) 86
SfcI CTRYAG 1 cut(s) 105
SfoI GGCGCC 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 125
SphI GCATGC 1 cut(s) 130
Sse9I AATT 1 cut(s) 96
SspDI GGCGCC 1 cut(s) 167
SspMI CTAG 3 cut(s) 35, 123, 144
StyD4I CCNGG 1 cut(s) 130
TasI AATT 1 cut(s) 96
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 1 cut(s) 154
TseI GCWGC 2 cut(s) 101, 104
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 1 cut(s) 154
XceI RCATGY 1 cut(s) 130
XspI CTAG 3 cut(s) 35, 123, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.