pycom02g12920

Salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000171
Physical Location & Seq
Forward (+)
9495179 .. 9496787
1609 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g12920.3

Sequence Viewer

Length: 843 bp
ATGGAGAACATAACAGAGAAGCTTTGCTTAGCAAAAGCTAGTACCTCAACCCCATCCTCGCCCCCCATTCACAACCAAACTCAAAGTCCAAAACATTTTGTGTTGATACATGGAGCTTGTCATGGAGCATGGAGCTGGTATAAGGTGGCAACTCTCCTGAAGGACTCAGGTCATCATGTCACAGCTCTAGACTTGGTAGCATCAGGGATCAACCCGATTCAGGTACAGCAACTGCCTTCGTTATCGGAATACGTCGAGCCTTTGACAAAGCTCATGGTGTCTCTACCACCAAATGAAAAGGTTATCCTTGTGGCTCACAGCTTTGGTGGAGCCGTCATATCTATTTTCATGGAGAGGTTTCCTCATAAAATTGCTGCTGCAGTATATGTTACAGCTGTCATGTCTGGTCCTACTCTCAATTTCTCAACTATACAATCAGAGATTAAGAAAAGATTGGATTATATGGACTCTCAATTCAGATATGATAACGGGACCAATAACCCTGCAACATCCTTTCTCTTTGGGCCTAAGGACTTGGCGACAAGCTTGTACCAGCTCTCACCACCACAGGATTTAACCCTAGCGTTATCGTTGGTGAGATTTATTCCTCGCTACAATTATGATGTTATAAAACTCACGAAAGAGAAGTATGGATCGGTTCCTAGAGTATTCATCGTGTCCGGCGAAGACCATGCGATAGTAATGGATGTGCAAAATTACATGATAAAAAGCAATCCACCAAATGAAGTGAAAGTGATAAACGGTTCTGATCACATGGTCATGCTCTCTAAACCCGTAGAGTTGTTCTTCCATCTCCAAAACATTGCTGAGAAATATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

281

Amino Acids

31.16

Weight (kDa)

7.81

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 629
AclWI GGATC 2 cut(s) 215, 661
AcuI CTGAAG 1 cut(s) 179
AfaI GTAC 3 cut(s) 43, 225, 551
AfiI CCNNNNNNNGG 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 2 cut(s) 215, 661
AlwNI CAGNNNCTG 1 cut(s) 232
AoxI GGCC 1 cut(s) 524
ApeKI GCWGC 2 cut(s) 374, 377
ArsI GACNNNNNNTTYG 2 cut(s) 70, 102
AspS9I GGNCC 3 cut(s) 407, 492, 524
AsuHPI GGTGA 2 cut(s) 552, 607
AvaII GGWCC 2 cut(s) 407, 492
AxyI CCTNAGG 1 cut(s) 528
BbsI GAAGAC 1 cut(s) 693
BbvI GCAGC 2 cut(s) 361, 364
BccI CCATC 2 cut(s) 61, 819
BceAI ACGGC 1 cut(s) 317
BcgI CGANNNNNNTGC 2 cut(s) 674, 708
BclI TGATCA 1 cut(s) 769
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 4 cut(s) 39, 188, 581, 663
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 2 cut(s) 375, 378
BlpI GCTNAGC 1 cut(s) 28
BlsI GCNGC 2 cut(s) 376, 379
Bme18I GGWCC 2 cut(s) 407, 492
BmgT120I GGNCC 3 cut(s) 407, 492, 524
BmiI GGNNCC 3 cut(s) 331, 493, 660
BmsI GCATC 1 cut(s) 209
BoxI GACNNNNGTC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 693
BplI GAGNNNNNCTC 2 cut(s) 346, 378
Bpu1102I GCTNAGC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse21I CCTNAGG 1 cut(s) 528
Bse3DI GCAATG 1 cut(s) 822
BseGI GGATG 3 cut(s) 53, 509, 712
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMI GCAATG 1 cut(s) 822
BseMII CTCAG 2 cut(s) 180, 819
BseXI GCAGC 2 cut(s) 361, 364
BshFI GGCC 1 cut(s) 526
BsiSI CCGG 1 cut(s) 681
BslFI GGGAC 1 cut(s) 505
BslI CCNNNNNNNGG 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 505
BsnI GGCC 1 cut(s) 526
Bsp143I GATC 3 cut(s) 207, 653, 769
Bsp1720I GCTNAGC 1 cut(s) 28
BspANI GGCC 1 cut(s) 526
BspCNI CTCAG 2 cut(s) 179, 820
BspLI GGNNCC 3 cut(s) 331, 493, 660
BspMAI CTGCAG 1 cut(s) 382
BspPI GGATC 2 cut(s) 215, 661
BsrDI GCAATG 1 cut(s) 822
BssMI GATC 3 cut(s) 207, 653, 769
Bst4CI ACNGT 1 cut(s) 764
BstDEI CTNAG 4 cut(s) 28, 166, 528, 828
BstF5I GGATG 3 cut(s) 53, 509, 712
BstKTI GATC 3 cut(s) 210, 656, 772
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 3 cut(s) 207, 653, 769
BstPAI GACNNNNGTC 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 2 cut(s) 361, 364
BstV2I GAAGAC 1 cut(s) 693
Bsu36I CCTNAGG 1 cut(s) 528
BsuRI GGCC 1 cut(s) 526
BtsCI GGATG 3 cut(s) 53, 509, 712
CaiI CAGNNNCTG 1 cut(s) 232
Cfr13I GGNCC 3 cut(s) 407, 492, 524
Csp6I GTAC 3 cut(s) 42, 224, 550
CviQI GTAC 3 cut(s) 42, 224, 550
DdeI CTNAG 4 cut(s) 28, 166, 528, 828
DpnI GATC 3 cut(s) 209, 655, 771
DpnII GATC 3 cut(s) 207, 653, 769
Eco47I GGWCC 2 cut(s) 407, 492
Eco57I CTGAAG 1 cut(s) 179
Eco81I CCTNAGG 1 cut(s) 528
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FaqI GGGAC 1 cut(s) 505
FbaI TGATCA 1 cut(s) 769
Fnu4HI GCNGC 2 cut(s) 375, 378
FokI GGATG 3 cut(s) 40, 496, 719
Fsp4HI GCNGC 2 cut(s) 375, 378
FspBI CTAG 4 cut(s) 39, 188, 581, 663
GluI GCNGC 2 cut(s) 375, 378
HaeIII GGCC 1 cut(s) 526
HapII CCGG 1 cut(s) 681
HindIII AAGCTT 2 cut(s) 20, 544
HinfI GANTC 3 cut(s) 164, 217, 467
HpaII CCGG 1 cut(s) 681
HphI GGTGA 2 cut(s) 552, 607
Hpy188I TCNGA 4 cut(s) 247, 439, 479, 769
Hpy188III TCNNGA 3 cut(s) 157, 188, 637
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 2 cut(s) 154, 246
HpyCH4III ACNGT 1 cut(s) 764
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 3 cut(s) 380, 506, 712
HpyF3I CTNAG 4 cut(s) 28, 166, 528, 828
HpySE526I ACGT 1 cut(s) 252
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 3 cut(s) 207, 653, 769
LmnI GCTCC 4 cut(s) 113, 125, 132, 329
Lsp1109I GCAGC 2 cut(s) 361, 364
LweI GCATC 1 cut(s) 209
MaeI CTAG 4 cut(s) 39, 188, 581, 663
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 178, 388
MalI GATC 3 cut(s) 209, 655, 771
MboI GATC 3 cut(s) 207, 653, 769
MboII GAAGA 2 cut(s) 698, 799
MluCI AATT 5 cut(s) 369, 418, 473, 616, 715
MlyI GAGTC 2 cut(s) 158, 461
MnlI CCTC 5 cut(s) 55, 67, 348, 372, 618
MseI TTAA 2 cut(s) 444, 575
MslI CAYNNNNRTG 1 cut(s) 779
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 1 cut(s) 681
NdeII GATC 3 cut(s) 207, 653, 769
NlaIV GGNNCC 3 cut(s) 331, 493, 660
NmuCI GTSAC 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 681
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 2 cut(s) 376, 379
PleI GAGTC 2 cut(s) 158, 461
PpsI GAGTC 2 cut(s) 158, 461
PshAI GACNNNNGTC 1 cut(s) 168
PsiI TTATAA 1 cut(s) 629
PspN4I GGNNCC 3 cut(s) 331, 493, 660
PspPI GGNCC 3 cut(s) 407, 492, 524
PstI CTGCAG 1 cut(s) 382
PstNI CAGNNNCTG 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 3 cut(s) 43, 225, 551
RsaNI GTAC 3 cut(s) 42, 224, 550
RseI CAYNNNNRTG 1 cut(s) 779
SaqAI TTAA 2 cut(s) 444, 575
SatI GCNGC 2 cut(s) 375, 378
Sau3AI GATC 3 cut(s) 207, 653, 769
Sau96I GGNCC 3 cut(s) 407, 492, 524
SchI GAGTC 2 cut(s) 158, 461
SfaNI GCATC 1 cut(s) 209
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 2 cut(s) 407, 492
SmiMI CAYNNNNRTG 1 cut(s) 779
Sse9I AATT 5 cut(s) 369, 418, 473, 616, 715
SspI AATATT 1 cut(s) 836
SspMI CTAG 4 cut(s) 39, 188, 581, 663
TaaI ACNGT 1 cut(s) 764
TaiI ACGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 255
TasI AATT 5 cut(s) 369, 418, 473, 616, 715
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 2 cut(s) 444, 575
Tru9I TTAA 2 cut(s) 444, 575
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 2 cut(s) 374, 377
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 5 cut(s) 309, 337, 661, 759, 828
VpaK11BI GGWCC 2 cut(s) 407, 492
XbaI TCTAGA 1 cut(s) 187
XspI CTAG 4 cut(s) 39, 188, 581, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.