Rmu_ssc0000417.1_g000012

salicylic acid-binding protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000417.1
Physical Location & Seq
Reverse (-)
71286 .. 71801
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000417.1_g000012.1.cds

Sequence Viewer

Length: 516 bp
atggagcggataagatctgtgaaggaagttgtgtattttcttatatttcttagcttggtagcaagttgcagtcctattagcgcagcttcttcttcccagatcccagctgggaagaagcactttgtgttaattcatggagccggacacggagcgtggtcttggtacaaggtggcgactttactgaaacactcgggtcataatgtaacggctctggacttgggagcatctggaatcaacccgatccaggttcagcaactcccttcgctctccgactacgttgaaccgctgacgaagctcatggagtctctgccaccaaaggagagggttattctggtgtctcacagcatgactggagctacaatagcagttttcatggagaggttccctgagaaaattgcggcagccgtgtatgtctctggctttatgtcgggtccgactctcaattactccaccatttttacagaggtaatgagtttcacactggtacatccaaccctcagttcttttcttagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

171

Amino Acids

18.57

Weight (kDa)

8.74

Isoelectric Point (pI)

32.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 7
AciI CCGC 3 cut(s) 7, 284, 398
AclWI GGATC 2 cut(s) 94, 235
AdeI CACNNNGTG 1 cut(s) 124
AfaI GTAC 2 cut(s) 164, 486
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 1 cut(s) 281
AjnI CCWGG 1 cut(s) 243
AjuI GAANNNNNNNTTGG 2 cut(s) 484, 516
AluBI AGCT 6 cut(s) 54, 86, 107, 295, 356, 513
AluI AGCT 6 cut(s) 54, 86, 107, 295, 356, 513
Alw26I GTCTC 3 cut(s) 309, 342, 418
AlwI GGATC 2 cut(s) 94, 235
Ama87I CYCGRG 1 cut(s) 190
ApeKI GCWGC 2 cut(s) 83, 401
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 431
AvaI CYCGRG 1 cut(s) 190
AvaII GGWCC 1 cut(s) 431
BbvI GCAGC 2 cut(s) 95, 413
BceAI ACGGC 2 cut(s) 222, 389
BciT130I CCWGG 1 cut(s) 245
BcoDI GTCTC 3 cut(s) 309, 342, 418
BglII AGATCT 1 cut(s) 14
BisI GCNGC 3 cut(s) 84, 399, 402
BlsI GCNGC 3 cut(s) 85, 400, 403
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 431
BmeT110I CYCGRG 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 3 cut(s) 139, 383, 432
BmrFI CCNGG 1 cut(s) 245
BmsI GCATC 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 2 cut(s) 355, 486
BseBI CCWGG 1 cut(s) 245
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMII CTCAG 2 cut(s) 378, 511
BseNI ACTGG 2 cut(s) 355, 486
BseXI GCAGC 2 cut(s) 95, 413
BseYI CCCAGC 2 cut(s) 103, 107
BsiHKCI CYCGRG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 3 cut(s) 309, 342, 418
BsoBI CYCGRG 1 cut(s) 190
Bsp143I GATC 3 cut(s) 14, 99, 240
BspACI CCGC 3 cut(s) 7, 284, 398
BspCNI CTCAG 2 cut(s) 379, 510
BspLI GGNNCC 3 cut(s) 139, 383, 432
BspPI GGATC 2 cut(s) 94, 235
BsrBI CCGCTC 1 cut(s) 7
BsrI ACTGG 2 cut(s) 355, 486
BssMI GATC 3 cut(s) 14, 99, 240
Bst2UI CCWGG 1 cut(s) 245
BstDEI CTNAG 4 cut(s) 50, 387, 497, 509
BstF5I GGATG 1 cut(s) 487
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 3 cut(s) 17, 102, 243
BstMAI GTCTC 3 cut(s) 309, 342, 418
BstMBI GATC 3 cut(s) 14, 99, 240
BstMWI GCNNNNNNNGC 2 cut(s) 292, 362
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
BstV1I GCAGC 2 cut(s) 95, 413
BstX2I RGATCY 2 cut(s) 14, 99
BstYI RGATCY 2 cut(s) 14, 99
BtsCI GGATG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 479
CfoI GCGC 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 431
Csp6I GTAC 2 cut(s) 163, 485
CviAII CATG 4 cut(s) 134, 298, 346, 373
CviQI GTAC 2 cut(s) 163, 485
DdeI CTNAG 4 cut(s) 50, 387, 497, 509
DpnI GATC 3 cut(s) 16, 101, 242
DpnII GATC 3 cut(s) 14, 99, 240
DraIII CACNNNGTG 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 431
Eco88I CYCGRG 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 243
FaeI CATG 4 cut(s) 137, 301, 349, 376
FaiI YATR 8 cut(s) 44, 135, 198, 299, 347, 374, 411, 425
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FatI CATG 4 cut(s) 133, 297, 345, 372
Fnu4HI GCNGC 3 cut(s) 84, 399, 402
FokI GGATG 1 cut(s) 474
Fsp4HI GCNGC 3 cut(s) 84, 399, 402
GlaI GCGC 1 cut(s) 82
GluI GCNGC 3 cut(s) 84, 399, 402
GsaI CCCAGC 2 cut(s) 107, 111
GsuI CTGGAG 1 cut(s) 372
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 83
Hin1II CATG 4 cut(s) 137, 301, 349, 376
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HinfI GANTC 3 cut(s) 231, 302, 436
HpaII CCGG 1 cut(s) 141
Hpy188I TCNGA 2 cut(s) 271, 435
Hpy188III TCNNGA 2 cut(s) 212, 228
HpyAV CCTTC 2 cut(s) 16, 270
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 2 cut(s) 292, 362
HpyF3I CTNAG 4 cut(s) 50, 387, 497, 509
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 4 cut(s) 137, 301, 349, 376
HspAI GCGC 1 cut(s) 81
Kzo9I GATC 3 cut(s) 14, 99, 240
LmnI GCTCC 5 cut(s) 4, 137, 149, 221, 353
Lsp1109I GCAGC 2 cut(s) 95, 413
LweI GCATC 1 cut(s) 233
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 202
MalI GATC 3 cut(s) 16, 101, 242
MbiI CCGCTC 1 cut(s) 7
MboI GATC 3 cut(s) 14, 99, 240
MboII GAAGA 3 cut(s) 81, 84, 124
MflI RGATCY 2 cut(s) 14, 99
MluCI AATT 3 cut(s) 129, 393, 442
MlyI GAGTC 2 cut(s) 311, 430
MmeI TCCRAC 3 cut(s) 294, 458, 515
MnlI CCTC 4 cut(s) 315, 372, 457, 506
MseI TTAA 1 cut(s) 128
MspA1I CMGCKG 2 cut(s) 107, 286
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 245
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 2 cut(s) 292, 362
NdeII GATC 3 cut(s) 14, 99, 240
NlaIII CATG 4 cut(s) 137, 301, 349, 376
NlaIV GGNNCC 3 cut(s) 139, 383, 432
PfeI GAWTC 1 cut(s) 231
PkrI GCNGC 3 cut(s) 85, 400, 403
PleI GAGTC 2 cut(s) 310, 430
PpsI GAGTC 2 cut(s) 310, 430
Psp6I CCWGG 1 cut(s) 243
PspFI CCCAGC 2 cut(s) 103, 107
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 3 cut(s) 139, 383, 432
PspPI GGNCC 1 cut(s) 431
PsuI RGATCY 2 cut(s) 14, 99
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 2 cut(s) 164, 486
RsaNI GTAC 2 cut(s) 163, 485
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 3 cut(s) 84, 399, 402
Sau3AI GATC 3 cut(s) 14, 99, 240
Sau96I GGNCC 1 cut(s) 431
SchI GAGTC 2 cut(s) 311, 430
ScrFI CCNGG 1 cut(s) 245
SfaNI GCATC 1 cut(s) 233
SinI GGWCC 1 cut(s) 431
Sse9I AATT 3 cut(s) 129, 393, 442
SsiI CCGC 3 cut(s) 7, 284, 398
StyD4I CCNGG 1 cut(s) 243
TaiI ACGT 1 cut(s) 279
TasI AATT 3 cut(s) 129, 393, 442
TauI GCSGC 1 cut(s) 401
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TscAI CASTG 1 cut(s) 486
TseI GCWGC 2 cut(s) 83, 401
TspDTI ATGAA 2 cut(s) 122, 361
TspGWI ACGGA 1 cut(s) 162
TspRI CASTG 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.