FvH4_1g14940

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000171
Physical Location & Seq
Forward (+)
8389416 .. 8391500
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14940.t1

Sequence Viewer

Length: 909 bp
ATGGAGCGCATAAGACCTGTGAATGAAGTTGTGTATTTCCTTATATTTCTTAGCTTGGTAGCAACTTGCAGTACCATTAGCGCAACTCAGTCATGTATAACGGAATCATCAAAGATTTGTGCAGCTTCTTCTTCTTCTTCCCAGATCCCAGTTGGGAAGAAGCACTTCGTGTTGATTCACGGGGCCGGTCACGGAGCGTGGTCTTGGTACAAGGTGGCGGCGTTACTGAAATCTTCCGGTCATAATGTAACGGCTCTGGACTTGGGAGCATCAGGAATCAACCCGATCCAGGTTCAGCAACTCCCTTCGTTCTCCGACTTCGTTGAACCGTTGACAAAGATCATGGTGTCACTGCCGCCAAAGGAAAGGGTTATTCTGGTGTCTCACAGCATGGCCGGAGCTACAATAGCGGTTTTCATGGAGAAGTTCCCTGAGAAAATTGCGGCAGCCGTGTATGTCTCTGCCTTTATGTCAGGTCCTACTCTCAATTACTCCACCATTTTTACAGAGATAAACAAACGATTGGATTATATGGATTCTGAATTTAGATATGACAACGGGAGCAATAATTCTGCAACCTCCTTCCGCTTTGGGCCGAAGGTCTCGGAAAACTTGTACCAGCTATCTCCACCAGAGGATTTAACACTAGGGATTTCGTTGGTGAGATTTTCCCCTCTATACGACTACGATCTTATGAAACTCACAGAGGAGAAATATGGATTGGTTCCCAGAATATTCATCGTGGCGGATCAAGACCGTGCAATAGTGTTGGACGTGCAAAATTTCATGATCAAGAATAATCCACCAGATGAAGTCAGAGTGATCAGTGGTTCTGATCACATGGTCATGTTCTGTAGACCAGTGGAGCTCTTCTCCCACCTCCAGAACATTGCTGAGAAATATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

303

Amino Acids

33.52

Weight (kDa)

6.17

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 54 - 169 4.3e-10 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 55 - 284 2e-17 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 56 - 284 1.5e-16 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 856
AciI CCGC 6 cut(s) 218, 356, 410, 443, 586, 746
AclWI GGATC 3 cut(s) 139, 280, 756
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 2 cut(s) 542, 781
AdeI CACNNNGTG 1 cut(s) 169
AfaI GTAC 3 cut(s) 73, 209, 617
AfiI CCNNNNNNNGG 1 cut(s) 289
AgsI TTSAA 1 cut(s) 326
AjiI CACGTC 1 cut(s) 775
AjnI CCWGG 1 cut(s) 288
AjuI GAANNNNNNNTTGG 2 cut(s) 704, 736
AluBI AGCT 5 cut(s) 54, 125, 401, 622, 868
AluI AGCT 5 cut(s) 54, 125, 401, 622, 868
Alw21I GWGCWC 1 cut(s) 870
Alw26I GTCTC 3 cut(s) 387, 463, 607
AlwI GGATC 3 cut(s) 139, 280, 756
AoxI GGCC 3 cut(s) 183, 393, 593
ApeKI GCWGC 2 cut(s) 122, 446
ApoI RAATTY 2 cut(s) 542, 781
Asp700I GAANNNNTTC 1 cut(s) 164
AspLEI GCGC 2 cut(s) 9, 83
AspS9I GGNCC 3 cut(s) 183, 476, 593
AsuHPI GGTGA 1 cut(s) 673
AvaII GGWCC 1 cut(s) 476
BanII GRGCYC 1 cut(s) 870
Bbv12I GWGCWC 1 cut(s) 870
BbvI GCAGC 2 cut(s) 134, 458
BceAI ACGGC 2 cut(s) 267, 434
BciT130I CCWGG 1 cut(s) 290
BclI TGATCA 3 cut(s) 789, 822, 835
BcoDI GTCTC 3 cut(s) 387, 463, 607
BfaI CTAG 1 cut(s) 647
BfmI CTRYAG 1 cut(s) 853
BisI GCNGC 5 cut(s) 123, 219, 356, 444, 447
BlsI GCNGC 5 cut(s) 124, 220, 357, 445, 448
Bme1390I CCNGG 1 cut(s) 290
Bme18I GGWCC 1 cut(s) 476
BmgBI CACGTC 1 cut(s) 775
BmgT120I GGNCC 3 cut(s) 183, 476, 593
BmiI GGNNCC 2 cut(s) 184, 726
BmrFI CCNGG 1 cut(s) 290
BmrI ACTGGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 278
BmuI ACTGGG 1 cut(s) 143
BplI GAGNNNNNCTC 2 cut(s) 857, 889
BpmI CTGGAG 1 cut(s) 866
BsaI GGTCTC 1 cut(s) 607
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 2 cut(s) 149, 860
Bse3DI GCAATG 1 cut(s) 888
BseBI CCWGG 1 cut(s) 290
BseLI CCNNNNNNNGG 1 cut(s) 289
BseMI GCAATG 1 cut(s) 888
BseMII CTCAG 3 cut(s) 101, 423, 885
BseNI ACTGG 2 cut(s) 149, 860
BseRI GAGGAG 1 cut(s) 722
BseXI GCAGC 2 cut(s) 134, 458
BsgI GTGCAG 1 cut(s) 141
BshFI GGCC 3 cut(s) 185, 395, 595
BsiHKAI GWGCWC 1 cut(s) 870
BsiSI CCGG 3 cut(s) 186, 237, 396
BslI CCNNNNNNNGG 1 cut(s) 289
BsmAI GTCTC 3 cut(s) 387, 463, 607
BsnI GGCC 3 cut(s) 185, 395, 595
Bso31I GGTCTC 1 cut(s) 607
Bsp1286I GDGCHC 1 cut(s) 870
Bsp143I GATC 8 cut(s) 144, 285, 339, 688, 748, 789, 822, 835
BspACI CCGC 6 cut(s) 218, 356, 410, 443, 586, 746
BspANI GGCC 3 cut(s) 185, 395, 595
BspCNI CTCAG 3 cut(s) 100, 424, 886
BspHI TCATGA 1 cut(s) 786
BspLI GGNNCC 2 cut(s) 184, 726
BspPI GGATC 3 cut(s) 139, 280, 756
BspQI GCTCTTC 1 cut(s) 875
BspTNI GGTCTC 1 cut(s) 607
BsrDI GCAATG 1 cut(s) 888
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 2 cut(s) 149, 860
BssAI RCCGGY 1 cut(s) 185
BssMI GATC 8 cut(s) 144, 285, 339, 688, 748, 789, 822, 835
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 2 cut(s) 330, 758
Bst6I CTCTTC 1 cut(s) 875
BstDEI CTNAG 4 cut(s) 50, 87, 432, 894
BstHHI GCGC 2 cut(s) 9, 83
BstKTI GATC 8 cut(s) 147, 288, 342, 691, 751, 792, 825, 838
BstMAI GTCTC 3 cut(s) 387, 463, 607
BstMBI GATC 8 cut(s) 144, 285, 339, 688, 748, 789, 822, 835
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstNI CCWGG 1 cut(s) 290
BstSCI CCNGG 1 cut(s) 288
BstSFI CTRYAG 1 cut(s) 853
BstV1I GCAGC 2 cut(s) 134, 458
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BsuRI GGCC 3 cut(s) 185, 395, 595
BtrI CACGTC 1 cut(s) 775
BtsI GCAGTG 1 cut(s) 350
BtsIMutI CAGTG 3 cut(s) 350, 832, 867
CciI TCATGA 1 cut(s) 786
CfoI GCGC 2 cut(s) 9, 83
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 3 cut(s) 183, 476, 593
Csp6I GTAC 3 cut(s) 72, 208, 616
CviAII CATG 7 cut(s) 93, 343, 391, 418, 787, 841, 847
CviQI GTAC 3 cut(s) 72, 208, 616
DdeI CTNAG 4 cut(s) 50, 87, 432, 894
DpnI GATC 8 cut(s) 146, 287, 341, 690, 750, 791, 824, 837
DpnII GATC 8 cut(s) 144, 285, 339, 688, 748, 789, 822, 835
DraIII CACNNNGTG 1 cut(s) 169
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 875
EarI CTCTTC 1 cut(s) 875
EciI GGCGGA 1 cut(s) 761
Ecl136II GAGCTC 1 cut(s) 868
Eco24I GRGCYC 1 cut(s) 870
Eco31I GGTCTC 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 476
Eco53kI GAGCTC 1 cut(s) 868
EcoICRI GAGCTC 1 cut(s) 868
EcoO109I RGGNCCY 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 870
FaeI CATG 7 cut(s) 96, 346, 394, 421, 790, 844, 850
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FatI CATG 7 cut(s) 92, 342, 390, 417, 786, 840, 846
FbaI TGATCA 3 cut(s) 789, 822, 835
FblI GTMKAC 1 cut(s) 856
Fnu4HI GCNGC 5 cut(s) 123, 219, 356, 444, 447
FriOI GRGCYC 1 cut(s) 870
Fsp4HI GCNGC 5 cut(s) 123, 219, 356, 444, 447
FspBI CTAG 1 cut(s) 647
GlaI GCGC 2 cut(s) 8, 82
GluI GCNGC 5 cut(s) 123, 219, 356, 444, 447
GsuI CTGGAG 1 cut(s) 866
HaeIII GGCC 3 cut(s) 185, 395, 595
HapII CCGG 3 cut(s) 186, 237, 396
HhaI GCGC 2 cut(s) 9, 83
Hin1II CATG 7 cut(s) 96, 346, 394, 421, 790, 844, 850
Hin6I GCGC 2 cut(s) 7, 81
HinP1I GCGC 2 cut(s) 7, 81
HincII GTYRAC 1 cut(s) 333
HindII GTYRAC 1 cut(s) 333
HinfI GANTC 4 cut(s) 104, 175, 276, 536
HpaII CCGG 3 cut(s) 186, 237, 396
HphI GGTGA 1 cut(s) 673
Hpy166II GTNNAC 2 cut(s) 333, 857
Hpy188I TCNGA 5 cut(s) 316, 541, 607, 818, 835
Hpy188III TCNNGA 6 cut(s) 257, 273, 752, 787, 793, 883
Hpy8I GTNNAC 2 cut(s) 333, 857
HpyAV CCTTC 3 cut(s) 315, 592, 592
HpyCH4III ACNGT 2 cut(s) 330, 758
HpyCH4IV ACGT 1 cut(s) 774
HpyCH4V TGCA 5 cut(s) 69, 122, 575, 761, 778
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 4 cut(s) 50, 87, 432, 894
HpySE526I ACGT 1 cut(s) 774
Hsp92II CATG 7 cut(s) 96, 346, 394, 421, 790, 844, 850
HspAI GCGC 2 cut(s) 7, 81
Ksp22I TGATCA 3 cut(s) 789, 822, 835
Kzo9I GATC 8 cut(s) 144, 285, 339, 688, 748, 789, 822, 835
LguI GCTCTTC 1 cut(s) 875
LmnI GCTCC 6 cut(s) 4, 194, 266, 398, 561, 865
Lsp1109I GCAGC 2 cut(s) 134, 458
LweI GCATC 1 cut(s) 278
MaeI CTAG 1 cut(s) 647
MaeII ACGT 1 cut(s) 774
MaeIII GTNAC 4 cut(s) 188, 222, 247, 348
MalI GATC 8 cut(s) 146, 287, 341, 690, 750, 791, 824, 837
MboI GATC 8 cut(s) 144, 285, 339, 688, 748, 789, 822, 835
MboII GAAGA 7 cut(s) 120, 123, 126, 129, 169, 225, 862
MflI RGATCY 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 870
MluCI AATT 5 cut(s) 438, 487, 542, 568, 781
MmeI TCCRAC 2 cut(s) 339, 750
MnlI CCTC 5 cut(s) 589, 628, 684, 700, 890
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 2 cut(s) 641, 907
MslI CAYNNNNRTG 1 cut(s) 845
MspI CCGG 3 cut(s) 186, 237, 396
MspR9I CCNGG 1 cut(s) 290
MvaI CCWGG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 407
NdeII GATC 8 cut(s) 144, 285, 339, 688, 748, 789, 822, 835
NlaIII CATG 7 cut(s) 96, 346, 394, 421, 790, 844, 850
NlaIV GGNNCC 2 cut(s) 184, 726
NmuCI GTSAC 2 cut(s) 188, 348
PagI TCATGA 1 cut(s) 786
PciSI GCTCTTC 1 cut(s) 875
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 4 cut(s) 104, 175, 276, 536
PkrI GCNGC 5 cut(s) 124, 220, 357, 445, 448
PpuMI RGGWCCY 1 cut(s) 476
Psp124BI GAGCTC 1 cut(s) 870
Psp5II RGGWCCY 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 184, 726
PspPI GGNCC 3 cut(s) 183, 476, 593
PspPPI RGGWCCY 1 cut(s) 476
PsuI RGATCY 1 cut(s) 144
RsaI GTAC 3 cut(s) 73, 209, 617
RsaNI GTAC 3 cut(s) 72, 208, 616
RseI CAYNNNNRTG 1 cut(s) 845
SacI GAGCTC 1 cut(s) 870
SapI GCTCTTC 1 cut(s) 875
SaqAI TTAA 2 cut(s) 641, 907
SatI GCNGC 5 cut(s) 123, 219, 356, 444, 447
Sau3AI GATC 8 cut(s) 144, 285, 339, 688, 748, 789, 822, 835
Sau96I GGNCC 3 cut(s) 183, 476, 593
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 1 cut(s) 870
SfaNI GCATC 1 cut(s) 278
SfcI CTRYAG 1 cut(s) 853
SinI GGWCC 1 cut(s) 476
SmiMI CAYNNNNRTG 1 cut(s) 845
Sse9I AATT 5 cut(s) 438, 487, 542, 568, 781
SsiI CCGC 6 cut(s) 218, 356, 410, 443, 586, 746
SspI AATATT 2 cut(s) 735, 902
SspMI CTAG 1 cut(s) 647
SstI GAGCTC 1 cut(s) 870
StyD4I CCNGG 1 cut(s) 288
TaaI ACNGT 2 cut(s) 330, 758
TaiI ACGT 1 cut(s) 777
TasI AATT 5 cut(s) 438, 487, 542, 568, 781
TauI GCSGC 3 cut(s) 221, 358, 446
TfiI GAWTC 4 cut(s) 104, 175, 276, 536
Tru1I TTAA 2 cut(s) 641, 907
Tru9I TTAA 2 cut(s) 641, 907
TscAI CASTG 3 cut(s) 357, 832, 867
TseFI GTSAC 2 cut(s) 188, 348
TseI GCWGC 2 cut(s) 122, 446
Tsp45I GTSAC 2 cut(s) 188, 348
TspDTI ATGAA 6 cut(s) 39, 406, 710, 727, 775, 825
TspGWI ACGGA 2 cut(s) 116, 207
TspRI CASTG 3 cut(s) 357, 832, 867
VpaK11BI GGWCC 1 cut(s) 476
XapI RAATTY 2 cut(s) 542, 781
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 856
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.