Rw1G008300

salicylic acid-binding protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
17773648 .. 17776036
2389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008300.1

Sequence Viewer

Length: 591 bp
ATGGAGTCTCTGCCATTGCATGATATGGTTATCCTAGTAGGGCACAACTTGGGTGGGCTCCCGATATCTCTTCTCATGGAGAGGTTCCTTAGTAAAATTGATGCTGCAGTTTTTGCCACCGCTAGCATGCCTGGTCTAAATATCATTTTGGCCACCATATCTGAAGAGATAAATAGTTCTACACATGCATATCTTGGCAGAAATACAGATTTTATGGGCACTCAATATAGATTTGATGATGGATCCGACAAACCTGCGACCGCAGTATTCTTTGGGCCGAAGTTTTTGGCGTCATCATTGTACCAACTCTCGCCACCAGAGGATTTAACACTAGCACTGACATTGGCGAGATGGGCGCCCCTGTTTCATGAAAAATTAGTAGTGACTAGGGAGAAATGCGGATCCATTTCTAAAATATTCATCATGACCGAACAAGACTGTTCAATAAAACCGGACCTGCAATTGTTGATGATCGTCAAAAATCCACCAGATGAAGTCAAAGTGATTAATGGTTCTGATCATATGGTCATGTTTTCCAGACCAATGGAGTTGTTCACCAACCTCCTTCAGATTGCTCAAAAATATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

196

Amino Acids

21.79

Weight (kDa)

5.49

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 262, 465
AccB1I GGYRCC 1 cut(s) 355
AciI CCGC 3 cut(s) 120, 261, 399
AclWI GGATC 4 cut(s) 237, 250, 396, 409
AcoI YGGCCR 1 cut(s) 150
AcuI CTGAAG 2 cut(s) 183, 551
AcyI GRCGYC 2 cut(s) 290, 356
AfaI GTAC 1 cut(s) 302
AgsI TTSAA 1 cut(s) 444
AjnI CCWGG 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 4 cut(s) 237, 250, 396, 409
AoxI GGCC 2 cut(s) 150, 275
ApeKI GCWGC 1 cut(s) 104
AseI ATTAAT 1 cut(s) 507
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 2 cut(s) 275, 454
AsuHPI GGTGA 1 cut(s) 547
AsuNHI GCTAGC 1 cut(s) 122
AvaII GGWCC 1 cut(s) 454
BaeGI GKGCMC 2 cut(s) 45, 221
BalI TGGCCA 1 cut(s) 152
BamHI GGATCC 2 cut(s) 242, 401
BanI GGYRCC 1 cut(s) 355
BanII GRGCYC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 91
BccI CCATC 2 cut(s) 233, 345
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 1 cut(s) 132
BclI TGATCA 1 cut(s) 517
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 4 cut(s) 35, 123, 332, 387
BfmI CTRYAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 359
BfuAI ACCTGC 2 cut(s) 262, 465
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 454
BmgT120I GGNCC 2 cut(s) 275, 454
BmiI GGNNCC 5 cut(s) 59, 86, 244, 357, 403
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 91
BmtI GCTAGC 1 cut(s) 126
BsaHI GRCGYC 2 cut(s) 290, 356
BsaWI WCCGGW 1 cut(s) 451
Bse3DI GCAATG 1 cut(s) 14
BseBI CCWGG 1 cut(s) 132
BseMI GCAATG 1 cut(s) 14
BseSI GKGCMC 2 cut(s) 45, 221
BseXI GCAGC 1 cut(s) 91
Bsh1285I CGRYCG 1 cut(s) 261
BshFI GGCC 2 cut(s) 152, 277
BshNI GGYRCC 1 cut(s) 355
BsiEI CGRYCG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 452
BsmAI GTCTC 1 cut(s) 12
BsnI GGCC 2 cut(s) 152, 277
Bsp1286I GDGCHC 3 cut(s) 45, 60, 221
Bsp143I GATC 4 cut(s) 242, 401, 471, 517
BspACI CCGC 3 cut(s) 120, 261, 399
BspANI GGCC 2 cut(s) 152, 277
BspHI TCATGA 2 cut(s) 367, 423
BspLI GGNNCC 5 cut(s) 59, 86, 244, 357, 403
BspMAI CTGCAG 1 cut(s) 109
BspMI ACCTGC 2 cut(s) 262, 465
BspOI GCTAGC 1 cut(s) 126
BspPI GGATC 4 cut(s) 237, 250, 396, 409
BspT107I GGYRCC 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 14
BssMI GATC 4 cut(s) 242, 401, 471, 517
BssNI GRCGYC 2 cut(s) 290, 356
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 440
Bst6I CTCTTC 2 cut(s) 75, 159
BstACI GRCGYC 2 cut(s) 290, 356
BstAPI GCANNNNNTGC 1 cut(s) 113
BstC8I GCNNGC 2 cut(s) 124, 128
BstDEI CTNAG 1 cut(s) 89
BstH2I RGCGCY 1 cut(s) 359
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 4 cut(s) 245, 404, 474, 520
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 4 cut(s) 242, 401, 471, 517
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 2 cut(s) 113, 353
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 2 cut(s) 130, 188
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 2 cut(s) 45, 221
BstV1I GCAGC 1 cut(s) 91
BstX2I RGATCY 2 cut(s) 242, 401
BstXI CCANNNNNNTGG 1 cut(s) 544
BstYI RGATCY 2 cut(s) 242, 401
BsuRI GGCC 2 cut(s) 152, 277
BtsIMutI CAGTG 1 cut(s) 335
BveI ACCTGC 2 cut(s) 262, 465
Cac8I GCNNGC 2 cut(s) 124, 128
CciI TCATGA 2 cut(s) 367, 423
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 2 cut(s) 275, 454
CseI GACGC 1 cut(s) 279
Csp6I GTAC 1 cut(s) 301
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviAII CATG 7 cut(s) 20, 76, 127, 185, 368, 424, 529
CviJI RGCY 3 cut(s) 58, 152, 277
CviKI_1 RGCY 3 cut(s) 58, 152, 277
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 1 cut(s) 89
DinI GGCGCC 1 cut(s) 357
DpnI GATC 4 cut(s) 244, 403, 473, 519
DpnII GATC 4 cut(s) 242, 401, 471, 517
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 2 cut(s) 75, 159
EarI CTCTTC 2 cut(s) 75, 159
Eco24I GRGCYC 1 cut(s) 60
Eco32I GATATC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 454
Eco57I CTGAAG 2 cut(s) 183, 551
EcoRII CCWGG 1 cut(s) 130
EcoRV GATATC 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 60
EgeI GGCGCC 1 cut(s) 357
EheI GGCGCC 1 cut(s) 357
FaeI CATG 7 cut(s) 23, 79, 130, 188, 371, 427, 532
FatI CATG 7 cut(s) 19, 75, 126, 184, 367, 423, 528
FauNDI CATATG 1 cut(s) 522
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 1 cut(s) 105
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 4 cut(s) 35, 123, 332, 387
GlaI GCGC 1 cut(s) 357
GluI GCNGC 1 cut(s) 105
HaeII RGCGCY 1 cut(s) 359
HaeIII GGCC 2 cut(s) 152, 277
HapII CCGG 1 cut(s) 452
HgaI GACGC 1 cut(s) 279
HhaI GCGC 1 cut(s) 358
Hin1I GRCGYC 2 cut(s) 290, 356
Hin1II CATG 7 cut(s) 23, 79, 130, 188, 371, 427, 532
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 452
HphI GGTGA 1 cut(s) 547
Hpy166II GTNNAC 1 cut(s) 555
Hpy188I TCNGA 4 cut(s) 163, 247, 517, 570
Hpy188III TCNNGA 4 cut(s) 61, 368, 424, 537
Hpy8I GTNNAC 1 cut(s) 555
HpyAV CCTTC 1 cut(s) 575
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4V TGCA 4 cut(s) 19, 107, 188, 460
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 353
HpyF3I CTNAG 1 cut(s) 89
Hsp92I GRCGYC 2 cut(s) 290, 356
Hsp92II CATG 7 cut(s) 23, 79, 130, 188, 371, 427, 532
HspAI GCGC 1 cut(s) 356
KasI GGCGCC 1 cut(s) 355
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 4 cut(s) 242, 401, 471, 517
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 9 cut(s) 117, 144, 267, 330, 374, 465, 470, 501, 550
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 91
MaeI CTAG 4 cut(s) 35, 123, 332, 387
MaeIII GTNAC 1 cut(s) 382
MalI GATC 4 cut(s) 244, 403, 473, 519
MboI GATC 4 cut(s) 242, 401, 471, 517
MboII GAAGA 2 cut(s) 62, 176
MfeI CAATTG 1 cut(s) 461
MflI RGATCY 2 cut(s) 242, 401
MhlI GDGCHC 3 cut(s) 45, 60, 221
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 3 cut(s) 96, 374, 461
MluNI TGGCCA 1 cut(s) 152
Mly113I GGCGCC 1 cut(s) 356
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 3 cut(s) 75, 313, 572
Mox20I TGGCCA 1 cut(s) 152
Mph1103I ATGCAT 1 cut(s) 190
MscI TGGCCA 1 cut(s) 152
MseI TTAA 3 cut(s) 326, 507, 589
Msp20I TGGCCA 1 cut(s) 152
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 1 cut(s) 132
MunI CAATTG 1 cut(s) 461
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 113, 353
NarI GGCGCC 1 cut(s) 356
NdeI CATATG 1 cut(s) 522
NdeII GATC 4 cut(s) 242, 401, 471, 517
NheI GCTAGC 1 cut(s) 122
NlaIII CATG 7 cut(s) 23, 79, 130, 188, 371, 427, 532
NlaIV GGNNCC 5 cut(s) 59, 86, 244, 357, 403
NmuCI GTSAC 1 cut(s) 382
NsiI ATGCAT 1 cut(s) 190
NspI RCATGY 2 cut(s) 130, 188
PaeI GCATGC 1 cut(s) 130
PagI TCATGA 2 cut(s) 367, 423
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 1 cut(s) 13
PluTI GGCGCC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 13
PshBI ATTAAT 1 cut(s) 507
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 5 cut(s) 59, 86, 244, 357, 403
PspPI GGNCC 2 cut(s) 275, 454
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 2 cut(s) 242, 401
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SaqAI TTAA 3 cut(s) 326, 507, 589
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 4 cut(s) 242, 401, 471, 517
Sau96I GGNCC 2 cut(s) 275, 454
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 3 cut(s) 45, 60, 221
SetI ASST 4 cut(s) 86, 256, 459, 564
SfaNI GCATC 1 cut(s) 91
SfcI CTRYAG 1 cut(s) 105
SfoI GGCGCC 1 cut(s) 357
SinI GGWCC 1 cut(s) 454
SphI GCATGC 1 cut(s) 130
Sse9I AATT 3 cut(s) 96, 374, 461
SsiI CCGC 3 cut(s) 120, 261, 399
SspDI GGCGCC 1 cut(s) 355
SspI AATATT 2 cut(s) 417, 584
SspMI CTAG 4 cut(s) 35, 123, 332, 387
StyD4I CCNGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 440
TaqII GACCGA 1 cut(s) 443
TasI AATT 3 cut(s) 96, 374, 461
Tru1I TTAA 3 cut(s) 326, 507, 589
Tru9I TTAA 3 cut(s) 326, 507, 589
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 4 cut(s) 356, 384, 409, 507
TspRI CASTG 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 454
VspI ATTAAT 1 cut(s) 507
XceI RCATGY 2 cut(s) 130, 188
XspI CTAG 4 cut(s) 35, 123, 332, 387
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.