Rmu_ssc0000417.1_g000001

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000417.1
OG0000171
Physical Location & Seq
Reverse (-)
5072 .. 5551
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000417.1_g000001.1.cds

Sequence Viewer

Length: 378 bp
atggattctgaatatagatatgataacgggaccaacaattctgcaacctcctttcgctttgggcctaaggtcttggcagcaagcttataccagctatctccagaggatttaacactaggattgtcgttggtgagattttctcctctatacaactacgatcttataacactcactgaggagaaatatggatcggttccgagaatattcatcgtggcagatcaagaccatgcaatagttttagacgtgcaaaatttcatgatcaagaataatccaccaaatgaagtgaaggtgatcaatggtgctgatcacatggtcatgttctctagacccgtggagctcttctcccacctccagaacattgctgagaaatattcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

125

Amino Acids

14.21

Weight (kDa)

5.02

Isoelectric Point (pI)

31.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 164
AclWI GGATC 1 cut(s) 196
AcsI RAATTY 1 cut(s) 250
AjiI CACGTC 1 cut(s) 244
AluBI AGCT 3 cut(s) 84, 94, 337
AluI AGCT 3 cut(s) 84, 94, 337
Alw21I GWGCWC 1 cut(s) 339
AlwI GGATC 1 cut(s) 196
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 250
AspS9I GGNCC 2 cut(s) 30, 62
AsuHPI GGTGA 2 cut(s) 142, 301
AvaII GGWCC 1 cut(s) 30
AxyI CCTNAGG 1 cut(s) 66
BanII GRGCYC 1 cut(s) 339
Bbv12I GWGCWC 1 cut(s) 339
BbvI GCAGC 1 cut(s) 89
BclI TGATCA 3 cut(s) 258, 291, 304
BfaI CTAG 2 cut(s) 116, 324
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 30
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 2 cut(s) 30, 62
BmiI GGNNCC 2 cut(s) 31, 195
BplI GAGNNNNNCTC 4 cut(s) 124, 156, 326, 358
BpmI CTGGAG 2 cut(s) 84, 335
BsaJI CCNNGG 1 cut(s) 330
Bse21I CCTNAGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 330
BseMI GCAATG 1 cut(s) 357
BseMII CTCAG 2 cut(s) 165, 354
BseRI GAGGAG 2 cut(s) 132, 191
BseXI GCAGC 1 cut(s) 89
BshFI GGCC 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 339
BslFI GGGAC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 43
BsnI GGCC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 6 cut(s) 157, 188, 217, 258, 291, 304
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 166, 355
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 31, 195
BspPI GGATC 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 357
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 6 cut(s) 157, 188, 217, 258, 291, 304
Bst6I CTCTTC 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 3 cut(s) 66, 174, 363
BstDSI CCRYGG 1 cut(s) 330
BstKTI GATC 6 cut(s) 160, 191, 220, 261, 294, 307
BstMBI GATC 6 cut(s) 157, 188, 217, 258, 291, 304
BstV1I GCAGC 1 cut(s) 89
Bsu36I CCTNAGG 1 cut(s) 66
BsuRI GGCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 330
BtrI CACGTC 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 82
CciI TCATGA 1 cut(s) 255
Cfr13I GGNCC 2 cut(s) 30, 62
CviAII CATG 4 cut(s) 227, 256, 310, 316
CviJI RGCY 4 cut(s) 64, 84, 94, 337
CviKI_1 RGCY 4 cut(s) 64, 84, 94, 337
DdeI CTNAG 3 cut(s) 66, 174, 363
DpnI GATC 6 cut(s) 159, 190, 219, 260, 293, 306
DpnII GATC 6 cut(s) 157, 188, 217, 258, 291, 304
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
Ecl136II GAGCTC 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 337
Eco81I CCTNAGG 1 cut(s) 66
EcoICRI GAGCTC 1 cut(s) 337
EcoT38I GRGCYC 1 cut(s) 339
FaeI CATG 4 cut(s) 230, 259, 313, 319
FaqI GGGAC 1 cut(s) 43
FatI CATG 4 cut(s) 226, 255, 309, 315
FbaI TGATCA 3 cut(s) 258, 291, 304
Fnu4HI GCNGC 1 cut(s) 78
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 2 cut(s) 116, 324
GluI GCNGC 1 cut(s) 78
GsuI CTGGAG 2 cut(s) 84, 335
HaeIII GGCC 1 cut(s) 64
Hin1II CATG 4 cut(s) 230, 259, 313, 319
HindIII AAGCTT 1 cut(s) 82
HinfI GANTC 1 cut(s) 5
HphI GGTGA 2 cut(s) 142, 301
Hpy188I TCNGA 2 cut(s) 10, 198
Hpy188III TCNNGA 6 cut(s) 101, 221, 256, 262, 324, 352
HpyAV CCTTC 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 3 cut(s) 44, 230, 247
HpyF3I CTNAG 3 cut(s) 66, 174, 363
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 4 cut(s) 230, 259, 313, 319
Ksp22I TGATCA 3 cut(s) 258, 291, 304
Kzo9I GATC 6 cut(s) 157, 188, 217, 258, 291, 304
LguI GCTCTTC 1 cut(s) 344
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 3 cut(s) 104, 114, 365
Lsp1109I GCAGC 1 cut(s) 89
MaeI CTAG 2 cut(s) 116, 324
MaeII ACGT 1 cut(s) 243
MalI GATC 6 cut(s) 159, 190, 219, 260, 293, 306
MboI GATC 6 cut(s) 157, 188, 217, 258, 291, 304
MboII GAAGA 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 339
MluCI AATT 2 cut(s) 37, 250
MnlI CCTC 5 cut(s) 58, 97, 153, 169, 359
MseI TTAA 2 cut(s) 110, 376
MslI CAYNNNNRTG 1 cut(s) 314
NdeII GATC 6 cut(s) 157, 188, 217, 258, 291, 304
NlaIII CATG 4 cut(s) 230, 259, 313, 319
NlaIV GGNNCC 2 cut(s) 31, 195
PagI TCATGA 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 344
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 79
PsiI TTATAA 1 cut(s) 164
Psp124BI GAGCTC 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 31, 195
PspPI GGNCC 2 cut(s) 30, 62
RseI CAYNNNNRTG 1 cut(s) 314
SacI GAGCTC 1 cut(s) 339
SapI GCTCTTC 1 cut(s) 344
SaqAI TTAA 2 cut(s) 110, 376
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 6 cut(s) 157, 188, 217, 258, 291, 304
Sau96I GGNCC 2 cut(s) 30, 62
SduI GDGCHC 1 cut(s) 339
SetI ASST 8 cut(s) 50, 72, 86, 96, 246, 291, 339, 351
SinI GGWCC 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 314
Sse9I AATT 2 cut(s) 37, 250
SspI AATATT 2 cut(s) 204, 371
SspMI CTAG 2 cut(s) 116, 324
SstI GAGCTC 1 cut(s) 339
TaiI ACGT 1 cut(s) 246
TasI AATT 2 cut(s) 37, 250
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 110, 376
Tru9I TTAA 2 cut(s) 110, 376
TscAI CASTG 1 cut(s) 178
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 3 cut(s) 196, 244, 294
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 30
XapI RAATTY 1 cut(s) 250
XbaI TCTAGA 1 cut(s) 323
XspI CTAG 2 cut(s) 116, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.