RchiOBHm_Chr2g0103821

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000171
Physical Location & Seq
Forward (+)
15156578 .. 15157891
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47816

Sequence Viewer

Length: 861 bp
ATGAAAATGGAGAATATGAGAGTGAAGCATTTTGTGCCTTTTCTTTTGCTTCTTTGCTTGGCAAGAATCTGTACTAATATTGTTGCAGCTGACCAAATCTCATCTGGGAAGAAGCATTTTGTGCTGGTTCATGGAGCTGGTCACGGAGCGTGGTGTTGGTATAAGCTGGCTACTCTATTGAACTCCGCAGGTCACAATGTTACAACTCTAGACCTTGCAGCATCTGGTATCAACCCGATCCAGGTACAGCAAGTTCATTCGTTCTCAGACTACGTTGAGCCATTGATCAAATTTCTAGGGTCTCTGTTACCAAAGGAGAGGGTTATCCTGGTTGGCCACAGCATGGGTGGGGCCGGGATATCAATTGCCATGGAGAGGTTCCCTGAGAAAATTGCTGCAGCTGTTTATGCCACTGCTTTGATGCCTGGTCCTGCTCTGAGTTACTTGACTATTTTTAAGAAGATTCAGGAAACATTGGTGTCAGCTGACGTTCAGTATAGATATGATCAGGGGGCCAACAAACCTCCAACCTCGCTACTCGTTGGACCAAAACTATTGTCTTCGAGATTGTACCAGCTATCGCCACCAGAGGATCTAAAACTAGCATTGTCATTGGTGAGATTTTCCCCTCTATTTATTGAAGAAATAAAACTCACTGAGGAGAAGTACGGATTGGTTCCAAGAGTTTTCATCGTGTGTGACCAAGACCTTTCAATAGAGGAGGATCTGCAAACGTGGATGATCAGGAAGAATCCCCCAAATGAAGTGAAGGTGATAAATGGTTCCGATCACATGGTCATGTTCTCTAGACCATTGGAGCTGTTCTCCAACCTCCTGAACGTTGCTGAGAAATATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

286

Amino Acids

31.84

Weight (kDa)

8.26

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 37 - 156 4.6e-13 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 39 - 271 4.9e-21 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 40 - 275 4e-23 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 179
AccB7I CCANNNNNTGG 1 cut(s) 343
AciI CCGC 1 cut(s) 186
AclI AACGTT 1 cut(s) 840
AclWI GGATC 3 cut(s) 232, 600, 732
AcoI YGGCCR 1 cut(s) 334
AcsI RAATTY 1 cut(s) 290
AfaI GTAC 4 cut(s) 73, 246, 572, 668
AfiI CCNNNNNNNGG 3 cut(s) 241, 343, 375
AgsI TTSAA 3 cut(s) 181, 641, 714
AjnI CCWGG 3 cut(s) 240, 327, 424
AjuI GAANNNNNNNTTGG 2 cut(s) 656, 688
AluBI AGCT 7 cut(s) 89, 137, 166, 401, 485, 577, 820
AluI AGCT 7 cut(s) 89, 137, 166, 401, 485, 577, 820
Alw26I GTCTC 1 cut(s) 306
AlwI GGATC 3 cut(s) 232, 600, 732
AlwNI CAGNNNCTG 1 cut(s) 224
AoxI GGCC 3 cut(s) 334, 351, 513
ApeKI GCWGC 4 cut(s) 86, 218, 395, 398
ApoI RAATTY 1 cut(s) 290
ArsI GACNNNNNNTTYG 2 cut(s) 542, 574
AspS9I GGNCC 4 cut(s) 351, 428, 513, 545
AsuC2I CCSGG 1 cut(s) 355
AsuHPI GGTGA 2 cut(s) 628, 784
AvaII GGWCC 2 cut(s) 428, 545
BalI TGGCCA 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 552
BbvI GCAGC 4 cut(s) 98, 230, 382, 410
BciT130I CCWGG 3 cut(s) 242, 329, 426
BclI TGATCA 3 cut(s) 285, 505, 741
BcnI CCSGG 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 4 cut(s) 209, 296, 602, 807
BfmI CTRYAG 1 cut(s) 396
BfuAI ACCTGC 1 cut(s) 179
BisI GCNGC 4 cut(s) 87, 219, 396, 399
BlsI GCNGC 4 cut(s) 88, 220, 397, 400
Bme1390I CCNGG 4 cut(s) 242, 329, 355, 426
Bme18I GGWCC 2 cut(s) 428, 545
BmgT120I GGNCC 4 cut(s) 351, 428, 513, 545
BmiI GGNNCC 5 cut(s) 352, 380, 514, 678, 784
BmrFI CCNGG 4 cut(s) 242, 329, 355, 426
BmsI GCATC 2 cut(s) 230, 411
BpiI GAAGAC 1 cut(s) 552
BplI GAGNNNNNCTC 2 cut(s) 809, 841
BpuMI CCSGG 1 cut(s) 355
BsaI GGTCTC 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 369
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 343, 375
BseBI CCWGG 3 cut(s) 242, 329, 426
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 744
BseLI CCNNNNNNNGG 3 cut(s) 241, 343, 375
BseMII CTCAG 5 cut(s) 279, 375, 428, 648, 837
BseRI GAGGAG 2 cut(s) 674, 734
BseXI GCAGC 4 cut(s) 98, 230, 382, 410
BshFI GGCC 3 cut(s) 336, 353, 515
BsiSI CCGG 1 cut(s) 354
BslI CCNNNNNNNGG 3 cut(s) 241, 343, 375
BsmAI GTCTC 1 cut(s) 306
BsnI GGCC 3 cut(s) 336, 353, 515
Bso31I GGTCTC 1 cut(s) 306
Bsp143I GATC 7 cut(s) 237, 285, 505, 592, 724, 741, 787
Bsp19I CCATGG 1 cut(s) 369
BspACI CCGC 1 cut(s) 186
BspANI GGCC 3 cut(s) 336, 353, 515
BspCNI CTCAG 5 cut(s) 278, 376, 429, 649, 838
BspLI GGNNCC 5 cut(s) 352, 380, 514, 678, 784
BspMAI CTGCAG 1 cut(s) 400
BspMI ACCTGC 1 cut(s) 179
BspPI GGATC 3 cut(s) 232, 600, 732
BspTNI GGTCTC 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 7 cut(s) 237, 285, 505, 592, 724, 741, 787
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 3 cut(s) 242, 329, 426
BstAPI GCANNNNNTGC 2 cut(s) 34, 121
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 5 cut(s) 265, 384, 437, 657, 846
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 1 cut(s) 744
BstKTI GATC 7 cut(s) 240, 288, 508, 595, 727, 744, 790
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 7 cut(s) 237, 285, 505, 592, 724, 741, 787
BstMWI GCNNNNNNNGC 3 cut(s) 34, 121, 407
BstNI CCWGG 3 cut(s) 242, 329, 426
BstSCI CCNGG 4 cut(s) 240, 327, 353, 424
BstSFI CTRYAG 1 cut(s) 396
BstV1I GCAGC 4 cut(s) 98, 230, 382, 410
BstV2I GAAGAC 1 cut(s) 552
BstX2I RGATCY 2 cut(s) 592, 724
BstYI RGATCY 2 cut(s) 592, 724
BsuRI GGCC 3 cut(s) 336, 353, 515
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 744
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 2 cut(s) 411, 654
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 168
CaiI CAGNNNCTG 1 cut(s) 224
Cfr13I GGNCC 4 cut(s) 351, 428, 513, 545
Csp6I GTAC 4 cut(s) 72, 245, 571, 667
CviAII CATG 5 cut(s) 131, 343, 370, 793, 799
CviQI GTAC 4 cut(s) 72, 245, 571, 667
DdeI CTNAG 5 cut(s) 265, 384, 437, 657, 846
DpnI GATC 7 cut(s) 239, 287, 507, 594, 726, 743, 789
DpnII GATC 7 cut(s) 237, 285, 505, 592, 724, 741, 787
EaeI YGGCCR 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 306
Eco32I GATATC 1 cut(s) 360
Eco47I GGWCC 2 cut(s) 428, 545
EcoRII CCWGG 3 cut(s) 240, 327, 424
EcoRV GATATC 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 5 cut(s) 134, 346, 373, 796, 802
FatI CATG 5 cut(s) 130, 342, 369, 792, 798
FbaI TGATCA 3 cut(s) 285, 505, 741
Fnu4HI GCNGC 4 cut(s) 87, 219, 396, 399
FokI GGATG 1 cut(s) 751
Fsp4HI GCNGC 4 cut(s) 87, 219, 396, 399
FspBI CTAG 4 cut(s) 209, 296, 602, 807
GluI GCNGC 4 cut(s) 87, 219, 396, 399
HaeIII GGCC 3 cut(s) 336, 353, 515
HapII CCGG 1 cut(s) 354
Hin1II CATG 5 cut(s) 134, 346, 373, 796, 802
HinfI GANTC 3 cut(s) 66, 463, 751
HpaII CCGG 1 cut(s) 354
HphI GGTGA 2 cut(s) 628, 784
Hpy188I TCNGA 3 cut(s) 268, 438, 787
Hpy188III TCNNGA 6 cut(s) 209, 467, 564, 745, 807, 835
HpyAV CCTTC 1 cut(s) 763
HpyCH4IV ACGT 4 cut(s) 273, 489, 734, 840
HpyCH4V TGCA 4 cut(s) 86, 218, 398, 730
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 121, 407
HpyF3I CTNAG 5 cut(s) 265, 384, 437, 657, 846
HpySE526I ACGT 4 cut(s) 273, 489, 734, 840
Hsp92II CATG 5 cut(s) 134, 346, 373, 796, 802
Ksp22I TGATCA 3 cut(s) 285, 505, 741
Kzo9I GATC 7 cut(s) 237, 285, 505, 592, 724, 741, 787
LmnI GCTCC 3 cut(s) 134, 146, 817
Lsp1109I GCAGC 4 cut(s) 98, 230, 382, 410
LweI GCATC 2 cut(s) 230, 411
MaeI CTAG 4 cut(s) 209, 296, 602, 807
MaeII ACGT 4 cut(s) 273, 489, 734, 840
MaeIII GTNAC 6 cut(s) 140, 191, 199, 306, 440, 698
MalI GATC 7 cut(s) 239, 287, 507, 594, 726, 743, 789
MboI GATC 7 cut(s) 237, 285, 505, 592, 724, 741, 787
MboII GAAGA 5 cut(s) 121, 472, 552, 653, 760
MfeI CAATTG 1 cut(s) 363
MflI RGATCY 2 cut(s) 592, 724
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 3 cut(s) 290, 363, 390
MluNI TGGCCA 1 cut(s) 336
MmeI TCCRAC 3 cut(s) 523, 551, 852
Mox20I TGGCCA 1 cut(s) 336
MscI TGGCCA 1 cut(s) 336
MseI TTAA 2 cut(s) 456, 859
MslI CAYNNNNRTG 1 cut(s) 797
Msp20I TGGCCA 1 cut(s) 336
MspA1I CMGCKG 3 cut(s) 89, 401, 485
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 4 cut(s) 242, 329, 355, 426
MunI CAATTG 1 cut(s) 363
MvaI CCWGG 3 cut(s) 242, 329, 426
MwoI GCNNNNNNNGC 3 cut(s) 34, 121, 407
NciI CCSGG 1 cut(s) 355
NcoI CCATGG 1 cut(s) 369
NdeII GATC 7 cut(s) 237, 285, 505, 592, 724, 741, 787
NlaIII CATG 5 cut(s) 134, 346, 373, 796, 802
NlaIV GGNNCC 5 cut(s) 352, 380, 514, 678, 784
NmuCI GTSAC 3 cut(s) 140, 191, 698
PfeI GAWTC 3 cut(s) 66, 463, 751
PflMI CCANNNNNTGG 1 cut(s) 343
PkrI GCNGC 4 cut(s) 88, 220, 397, 400
Psp1406I AACGTT 1 cut(s) 840
Psp6I CCWGG 3 cut(s) 240, 327, 424
PspGI CCWGG 3 cut(s) 240, 327, 424
PspN4I GGNNCC 5 cut(s) 352, 380, 514, 678, 784
PspPI GGNCC 4 cut(s) 351, 428, 513, 545
PsrI GAACNNNNNNTAC 2 cut(s) 237, 269
PstI CTGCAG 1 cut(s) 400
PstNI CAGNNNCTG 1 cut(s) 224
PsuI RGATCY 2 cut(s) 592, 724
PvuII CAGCTG 3 cut(s) 89, 401, 485
RsaI GTAC 4 cut(s) 73, 246, 572, 668
RsaNI GTAC 4 cut(s) 72, 245, 571, 667
RseI CAYNNNNRTG 1 cut(s) 797
SaqAI TTAA 2 cut(s) 456, 859
SatI GCNGC 4 cut(s) 87, 219, 396, 399
Sau3AI GATC 7 cut(s) 237, 285, 505, 592, 724, 741, 787
Sau96I GGNCC 4 cut(s) 351, 428, 513, 545
ScrFI CCNGG 4 cut(s) 242, 329, 355, 426
SfaNI GCATC 2 cut(s) 230, 411
SfcI CTRYAG 1 cut(s) 396
SinI GGWCC 2 cut(s) 428, 545
SmiMI CAYNNNNRTG 1 cut(s) 797
Sse9I AATT 3 cut(s) 290, 363, 390
SsiI CCGC 1 cut(s) 186
SspI AATATT 2 cut(s) 79, 854
SspMI CTAG 4 cut(s) 209, 296, 602, 807
StyD4I CCNGG 4 cut(s) 240, 327, 353, 424
StyI CCWWGG 1 cut(s) 369
TaiI ACGT 4 cut(s) 276, 492, 737, 843
TaqI TCGA 1 cut(s) 563
TasI AATT 3 cut(s) 290, 363, 390
TatI WGTACW 1 cut(s) 71
TfiI GAWTC 3 cut(s) 66, 463, 751
Tru1I TTAA 2 cut(s) 456, 859
Tru9I TTAA 2 cut(s) 456, 859
TscAI CASTG 2 cut(s) 418, 661
TseFI GTSAC 3 cut(s) 140, 191, 698
TseI GCWGC 4 cut(s) 86, 218, 395, 398
Tsp45I GTSAC 3 cut(s) 140, 191, 698
TspDTI ATGAA 5 cut(s) 17, 119, 245, 679, 777
TspGWI ACGGA 2 cut(s) 159, 684
TspRI CASTG 2 cut(s) 418, 661
Van91I CCANNNNNTGG 1 cut(s) 343
VpaK11BI GGWCC 2 cut(s) 428, 545
XapI RAATTY 1 cut(s) 290
XbaI TCTAGA 2 cut(s) 208, 806
XcmI CCANNNNNNNNNTGG 2 cut(s) 101, 344
XspI CTAG 4 cut(s) 209, 296, 602, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.