RchiOBHm_Chr2g0103841

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000171
Physical Location & Seq
Forward (+)
15186576 .. 15189966
3391 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47818

Sequence Viewer

Length: 783 bp
ATGCTTGGCTGCTACATCTCAGACTACAGAAAGAAGCATTTTGTGCTGGTTCATGGAGCTGGTCACGGAGCTTGGTGTTGGTATAAGCTGGCAACTCTATTGAACTCCACAGGTCACAATGTTACAACTCTAGACCTTGCAGCATCCGGTATCAACCCGATCCAGGTACAGCAAGTTCATTCGTTCTCAGACTACGTTGAGCCATTGATCAAATTTCTGGGGTCTCTGTTACCAAAAGAGAGGGTTATCCTGGTTGGCCACAGCATGGGTGGGGCGGTGATATCAATTGCCATGGAGAGGTTCCCTGAGAAAATTGCTGCAGCTGTTTATGCCACTGCTTTTATGCCTGGTCCTGCTCTGAGTTACTTGACTATTTTTGAGAAGATTCAGGAAACATTGGTGTCAGCTGACGTTCAGTATAGATATGATCAGGGGGCCAACAAACCTCCAACCTCGCTACTCATTGGACCAAAACTATTGTCTTCGAGATTGTACCAGCTATCGCCACCAGAGGATCTAAAACTAGCATTGTCATTGGTGAGATTTTCCCCTCTATTTAATGAAGAAATAAAACTCACCGAGGAGAAGTACGGATTGGTTCCAAGAGTTTTCATCGTGTGTGACCAAGACCTTACAATACAGGAGGATCTGCAAACGTGGATGATCAGGAAAAATCCCCCAAATGAAGTGAAGGTTATAAATGGTTCCGATCACATGGTCATGTTTTCTAGACCACTGGAGCTGTTCTCCAACCTCCTGAACGTTGCTGAGAAATATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

260

Amino Acids

29.13

Weight (kDa)

6.66

Isoelectric Point (pI)

29.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 11 - 119 8.4e-14 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 13 - 245 1.3e-21 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 14 - 249 9.8e-25 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 698
AccB7I CCANNNNNTGG 1 cut(s) 265
AciI CCGC 1 cut(s) 275
AclI AACGTT 1 cut(s) 762
AclWI GGATC 3 cut(s) 154, 522, 654
AcoI YGGCCR 1 cut(s) 256
AcsI RAATTY 1 cut(s) 212
AfaI GTAC 3 cut(s) 168, 494, 590
AfiI CCNNNNNNNGG 3 cut(s) 163, 265, 297
AgsI TTSAA 1 cut(s) 103
AjnI CCWGG 3 cut(s) 162, 249, 346
AjuI GAANNNNNNNTTGG 2 cut(s) 578, 610
AluBI AGCT 7 cut(s) 59, 71, 88, 323, 407, 499, 742
AluI AGCT 7 cut(s) 59, 71, 88, 323, 407, 499, 742
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 3 cut(s) 154, 522, 654
AoxI GGCC 2 cut(s) 256, 435
ApeKI GCWGC 4 cut(s) 9, 140, 317, 320
ApoI RAATTY 1 cut(s) 212
ArsI GACNNNNNNTTYG 2 cut(s) 464, 496
AspS9I GGNCC 3 cut(s) 350, 435, 467
AsuHPI GGTGA 3 cut(s) 289, 550, 568
AvaII GGWCC 2 cut(s) 350, 467
BalI TGGCCA 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 474
BbvI GCAGC 3 cut(s) 152, 304, 332
BciT130I CCWGG 3 cut(s) 164, 251, 348
BclI TGATCA 3 cut(s) 207, 427, 663
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 3 cut(s) 131, 524, 729
BfmI CTRYAG 2 cut(s) 25, 318
BisI GCNGC 4 cut(s) 10, 141, 318, 321
BlsI GCNGC 4 cut(s) 11, 142, 319, 322
Bme1390I CCNGG 3 cut(s) 164, 251, 348
Bme18I GGWCC 2 cut(s) 350, 467
BmgT120I GGNCC 3 cut(s) 350, 435, 467
BmiI GGNNCC 4 cut(s) 302, 436, 600, 706
BmrFI CCNGG 3 cut(s) 164, 251, 348
BmsI GCATC 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 474
BplI GAGNNNNNCTC 2 cut(s) 731, 763
BpmI CTGGAG 1 cut(s) 758
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 291, 579
BsaWI WCCGGW 1 cut(s) 146
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 265, 297
Bse1I ACTGG 1 cut(s) 741
BseBI CCWGG 3 cut(s) 164, 251, 348
BseDI CCNNGG 2 cut(s) 291, 579
BseGI GGATG 2 cut(s) 143, 666
BseLI CCNNNNNNNGG 3 cut(s) 163, 265, 297
BseMII CTCAG 5 cut(s) 33, 201, 297, 350, 759
BseNI ACTGG 1 cut(s) 741
BseRI GAGGAG 1 cut(s) 596
BseXI GCAGC 3 cut(s) 152, 304, 332
BshFI GGCC 2 cut(s) 258, 437
BsiSI CCGG 1 cut(s) 147
BslI CCNNNNNNNGG 3 cut(s) 163, 265, 297
BsmAI GTCTC 1 cut(s) 228
BsnI GGCC 2 cut(s) 258, 437
Bso31I GGTCTC 1 cut(s) 228
Bsp143I GATC 7 cut(s) 159, 207, 427, 514, 646, 663, 709
Bsp19I CCATGG 1 cut(s) 291
BspACI CCGC 1 cut(s) 275
BspANI GGCC 2 cut(s) 258, 437
BspCNI CTCAG 5 cut(s) 32, 200, 298, 351, 760
BspLI GGNNCC 4 cut(s) 302, 436, 600, 706
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 3 cut(s) 154, 522, 654
BspTNI GGTCTC 1 cut(s) 228
BsrI ACTGG 1 cut(s) 741
BssECI CCNNGG 2 cut(s) 291, 579
BssMI GATC 7 cut(s) 159, 207, 427, 514, 646, 663, 709
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 3 cut(s) 164, 251, 348
BstAPI GCANNNNNTGC 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 5 cut(s) 19, 187, 306, 359, 768
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 2 cut(s) 143, 666
BstKTI GATC 7 cut(s) 162, 210, 430, 517, 649, 666, 712
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 7 cut(s) 159, 207, 427, 514, 646, 663, 709
BstMWI GCNNNNNNNGC 2 cut(s) 43, 329
BstNI CCWGG 3 cut(s) 164, 251, 348
BstSCI CCNGG 3 cut(s) 162, 249, 346
BstSFI CTRYAG 2 cut(s) 25, 318
BstV1I GCAGC 3 cut(s) 152, 304, 332
BstV2I GAAGAC 1 cut(s) 474
BstX2I RGATCY 2 cut(s) 514, 646
BstYI RGATCY 2 cut(s) 514, 646
BsuRI GGCC 2 cut(s) 258, 437
BtgI CCRYGG 1 cut(s) 291
BtsCI GGATG 2 cut(s) 143, 666
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 2 cut(s) 333, 734
Cac8I GCNNGC 1 cut(s) 90
Cfr13I GGNCC 3 cut(s) 350, 435, 467
Csp6I GTAC 3 cut(s) 167, 493, 589
CviAII CATG 5 cut(s) 53, 265, 292, 715, 721
CviQI GTAC 3 cut(s) 167, 493, 589
DdeI CTNAG 5 cut(s) 19, 187, 306, 359, 768
DpnI GATC 7 cut(s) 161, 209, 429, 516, 648, 665, 711
DpnII GATC 7 cut(s) 159, 207, 427, 514, 646, 663, 709
EaeI YGGCCR 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 291
Eco31I GGTCTC 1 cut(s) 228
Eco32I GATATC 1 cut(s) 282
Eco47I GGWCC 2 cut(s) 350, 467
EcoRII CCWGG 3 cut(s) 162, 249, 346
EcoRV GATATC 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 5 cut(s) 56, 268, 295, 718, 724
FatI CATG 5 cut(s) 52, 264, 291, 714, 720
FbaI TGATCA 3 cut(s) 207, 427, 663
Fnu4HI GCNGC 4 cut(s) 10, 141, 318, 321
FokI GGATG 2 cut(s) 130, 673
Fsp4HI GCNGC 4 cut(s) 10, 141, 318, 321
FspBI CTAG 3 cut(s) 131, 524, 729
GluI GCNGC 4 cut(s) 10, 141, 318, 321
GsuI CTGGAG 1 cut(s) 758
HaeIII GGCC 2 cut(s) 258, 437
HapII CCGG 1 cut(s) 147
Hin1II CATG 5 cut(s) 56, 268, 295, 718, 724
HinfI GANTC 1 cut(s) 385
HpaII CCGG 1 cut(s) 147
HphI GGTGA 3 cut(s) 289, 550, 568
Hpy188I TCNGA 4 cut(s) 22, 190, 360, 709
Hpy188III TCNNGA 6 cut(s) 131, 389, 486, 667, 729, 757
HpyAV CCTTC 1 cut(s) 685
HpyCH4IV ACGT 4 cut(s) 195, 411, 656, 762
HpyCH4V TGCA 3 cut(s) 140, 320, 652
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 329
HpyF3I CTNAG 5 cut(s) 19, 187, 306, 359, 768
HpySE526I ACGT 4 cut(s) 195, 411, 656, 762
Hsp92II CATG 5 cut(s) 56, 268, 295, 718, 724
Ksp22I TGATCA 3 cut(s) 207, 427, 663
Kzo9I GATC 7 cut(s) 159, 207, 427, 514, 646, 663, 709
LmnI GCTCC 3 cut(s) 56, 68, 739
Lsp1109I GCAGC 3 cut(s) 152, 304, 332
LweI GCATC 1 cut(s) 152
MaeI CTAG 3 cut(s) 131, 524, 729
MaeII ACGT 4 cut(s) 195, 411, 656, 762
MaeIII GTNAC 6 cut(s) 62, 113, 121, 228, 362, 620
MalI GATC 7 cut(s) 161, 209, 429, 516, 648, 665, 711
MboI GATC 7 cut(s) 159, 207, 427, 514, 646, 663, 709
MboII GAAGA 3 cut(s) 394, 474, 575
MfeI CAATTG 1 cut(s) 285
MflI RGATCY 2 cut(s) 514, 646
MlsI TGGCCA 1 cut(s) 258
MluCI AATT 3 cut(s) 212, 285, 312
MluNI TGGCCA 1 cut(s) 258
MmeI TCCRAC 2 cut(s) 473, 774
MnlI CCTC 9 cut(s) 234, 291, 456, 463, 505, 561, 574, 637, 764
Mox20I TGGCCA 1 cut(s) 258
MscI TGGCCA 1 cut(s) 258
MseI TTAA 2 cut(s) 558, 781
MslI CAYNNNNRTG 1 cut(s) 719
Msp20I TGGCCA 1 cut(s) 258
MspA1I CMGCKG 2 cut(s) 323, 407
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 3 cut(s) 164, 251, 348
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 3 cut(s) 164, 251, 348
MwoI GCNNNNNNNGC 2 cut(s) 43, 329
NcoI CCATGG 1 cut(s) 291
NdeII GATC 7 cut(s) 159, 207, 427, 514, 646, 663, 709
NlaIII CATG 5 cut(s) 56, 268, 295, 718, 724
NlaIV GGNNCC 4 cut(s) 302, 436, 600, 706
NmuCI GTSAC 3 cut(s) 62, 113, 620
PfeI GAWTC 1 cut(s) 385
PflMI CCANNNNNTGG 1 cut(s) 265
PkrI GCNGC 4 cut(s) 11, 142, 319, 322
PsiI TTATAA 1 cut(s) 698
Psp1406I AACGTT 1 cut(s) 762
Psp6I CCWGG 3 cut(s) 162, 249, 346
PspGI CCWGG 3 cut(s) 162, 249, 346
PspN4I GGNNCC 4 cut(s) 302, 436, 600, 706
PspPI GGNCC 3 cut(s) 350, 435, 467
PsrI GAACNNNNNNTAC 2 cut(s) 159, 191
PstI CTGCAG 1 cut(s) 322
PsuI RGATCY 2 cut(s) 514, 646
PvuII CAGCTG 2 cut(s) 323, 407
RsaI GTAC 3 cut(s) 168, 494, 590
RsaNI GTAC 3 cut(s) 167, 493, 589
RseI CAYNNNNRTG 1 cut(s) 719
SaqAI TTAA 2 cut(s) 558, 781
SatI GCNGC 4 cut(s) 10, 141, 318, 321
Sau3AI GATC 7 cut(s) 159, 207, 427, 514, 646, 663, 709
Sau96I GGNCC 3 cut(s) 350, 435, 467
ScrFI CCNGG 3 cut(s) 164, 251, 348
SfaNI GCATC 1 cut(s) 152
SfcI CTRYAG 2 cut(s) 25, 318
SinI GGWCC 2 cut(s) 350, 467
SmiMI CAYNNNNRTG 1 cut(s) 719
Sse9I AATT 3 cut(s) 212, 285, 312
SsiI CCGC 1 cut(s) 275
SspI AATATT 1 cut(s) 776
SspMI CTAG 3 cut(s) 131, 524, 729
StyD4I CCNGG 3 cut(s) 162, 249, 346
StyI CCWWGG 1 cut(s) 291
TaiI ACGT 4 cut(s) 198, 414, 659, 765
TaqI TCGA 1 cut(s) 485
TasI AATT 3 cut(s) 212, 285, 312
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 2 cut(s) 558, 781
Tru9I TTAA 2 cut(s) 558, 781
TscAI CASTG 2 cut(s) 340, 741
TseFI GTSAC 3 cut(s) 62, 113, 620
TseI GCWGC 4 cut(s) 9, 140, 317, 320
Tsp45I GTSAC 3 cut(s) 62, 113, 620
TspDTI ATGAA 5 cut(s) 41, 167, 576, 601, 699
TspGWI ACGGA 2 cut(s) 81, 606
TspRI CASTG 2 cut(s) 340, 741
Van91I CCANNNNNTGG 1 cut(s) 265
VpaK11BI GGWCC 2 cut(s) 350, 467
XapI RAATTY 1 cut(s) 212
XbaI TCTAGA 2 cut(s) 130, 728
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
XspI CTAG 3 cut(s) 131, 524, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.