Rh1AG102300

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000171
Physical Location & Seq
Forward (+)
17864241 .. 17865519
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG102300.1

Sequence Viewer

Length: 873 bp
ATGAAGGATTTGATTTCCTCCAAGCATGAAAGCAAGACCAGAGAAAATGCAGGCTTAGGAAAGATTGTGATGAAAATGGAAAATATGAGAGTGAAGCATTTTGCTTTGCCTTTTCTTGTGCTTCTTTGCTTGGCAAGAATCTGTAGCAATAGTCTTACAGCTGATCACTATCCAGACCAAATCCTCTTTGGGAAGAAGCATTTTGTGCTGGTTCATGGAGCCGGTCACGGAGCTTGGTGTTGGTATAAGTTGGCAACTCTATTGACCTCCACAGGTCACAATGTTACAACACTAGACCTTGCAGCATCTGGGATCAACCAGATCCAGGTAGAGCAAGTTCATTTGTTCTCCGAGTACGTTGAGCCATTGATCAGTTTTCTGGGGTCTCTTACGCCAAAGGAGAGGGTTATCCTGGTTGGCCACAGCTTGGGTGGAGCCGTGATATCAATTGCCATGGAGAGGTTCCCTGAGAAAATTGCTGCTGCTGTATATGCTACTGCTGTGATGCCAGGTCCTTCTCTTAGTTACTTGACTATACATGATAAGCTCAAGGAAAGATGGGATGCTAAGCAAATGTCATCGTACCAGCTATCGCCACCAGAGGATCTAACACTAGCATTGTCATTGCTGAGACCTTCCCCAGCATTTAATGAAGATATAAAACTCACCGACGAGAAATACGGATTGGTTCCAAGAGTGTTCATCATGTGCGACCAAGACCTTACAATAGAGGAGGAAATACAAATGTGGATGATCAGGGAGAACCCACCAAATGAAGTGAAAGTGATAAATGGTTCCGATCACATGGTCATGTTCTCTAGACCACAGGAGCTGTTCTCCAACCTCCTCAAGATTGCTGAGAAATATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

290

Amino Acids

32.6

Weight (kDa)

6.41

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 66 - 190 9.3e-11 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 67 - 175 1.4e-14 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 68 - 278 1.2e-21 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 427
AclWI GGATC 3 cut(s) 316, 320, 612
AcoI YGGCCR 1 cut(s) 418
AfaI GTAC 2 cut(s) 356, 584
AfiI CCNNNNNNNGG 3 cut(s) 325, 427, 459
AjnI CCWGG 3 cut(s) 324, 411, 508
AjuI GAANNNNNNNTTGG 2 cut(s) 668, 700
AluBI AGCT 6 cut(s) 161, 233, 426, 547, 589, 832
AluI AGCT 6 cut(s) 161, 233, 426, 547, 589, 832
Alw26I GTCTC 2 cut(s) 390, 625
AlwI GGATC 3 cut(s) 316, 320, 612
AlwNI CAGNNNCTG 2 cut(s) 308, 832
AoxI GGCC 1 cut(s) 418
ApeKI GCWGC 3 cut(s) 302, 479, 482
AspS9I GGNCC 1 cut(s) 512
AsuHPI GGTGA 1 cut(s) 658
AvaII GGWCC 1 cut(s) 512
BalI TGGCCA 1 cut(s) 420
BbvI GCAGC 3 cut(s) 314, 466, 469
BccI CCATC 1 cut(s) 552
BceAI ACGGC 1 cut(s) 422
BciT130I CCWGG 3 cut(s) 326, 413, 510
BclI TGATCA 3 cut(s) 163, 369, 753
BcoDI GTCTC 2 cut(s) 390, 625
BfaI CTAG 3 cut(s) 293, 614, 819
BfmI CTRYAG 1 cut(s) 142
BisI GCNGC 3 cut(s) 303, 480, 483
BlpI GCTNAGC 1 cut(s) 567
BlsI GCNGC 3 cut(s) 304, 481, 484
Bme1390I CCNGG 3 cut(s) 326, 413, 510
Bme18I GGWCC 1 cut(s) 512
BmgT120I GGNCC 1 cut(s) 512
BmiI GGNNCC 5 cut(s) 220, 436, 464, 690, 796
BmrFI CCNGG 3 cut(s) 326, 413, 510
BmsI GCATC 3 cut(s) 314, 495, 553
BplI GAGNNNNNCTC 2 cut(s) 821, 853
Bpu10I CCTNAGC 1 cut(s) 55
Bpu1102I GCTNAGC 1 cut(s) 567
BpuEI CTTGAG 2 cut(s) 533, 833
BsaBI GATNNNNATC 1 cut(s) 168
BsaI GGTCTC 2 cut(s) 390, 625
BsaJI CCNNGG 1 cut(s) 453
Bsc4I CCNNNNNNNGG 3 cut(s) 325, 427, 459
Bse118I RCCGGY 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 623
Bse8I GATNNNNATC 1 cut(s) 168
BseBI CCWGG 3 cut(s) 326, 413, 510
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 2 cut(s) 568, 756
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 3 cut(s) 325, 427, 459
BseMI GCAATG 1 cut(s) 623
BseMII CTCAG 3 cut(s) 459, 620, 849
BseRI GAGGAG 2 cut(s) 746, 836
BseXI GCAGC 3 cut(s) 314, 466, 469
BseYI CCCAGC 1 cut(s) 640
BshFI GGCC 1 cut(s) 420
BsiSI CCGG 1 cut(s) 222
BslI CCNNNNNNNGG 3 cut(s) 325, 427, 459
BsmAI GTCTC 2 cut(s) 390, 625
BsnI GGCC 1 cut(s) 420
Bso31I GGTCTC 2 cut(s) 390, 625
Bsp143I GATC 7 cut(s) 163, 312, 321, 369, 604, 753, 799
Bsp1720I GCTNAGC 1 cut(s) 567
Bsp19I CCATGG 1 cut(s) 453
BspANI GGCC 1 cut(s) 420
BspCNI CTCAG 3 cut(s) 460, 621, 850
BspLI GGNNCC 5 cut(s) 220, 436, 464, 690, 796
BspPI GGATC 3 cut(s) 316, 320, 612
BspTNI GGTCTC 2 cut(s) 390, 625
BsrDI GCAATG 1 cut(s) 623
BsrFI RCCGGY 1 cut(s) 221
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 7 cut(s) 163, 312, 321, 369, 604, 753, 799
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 3 cut(s) 326, 413, 510
BstAPI GCANNNNNTGC 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 6 cut(s) 55, 468, 521, 567, 629, 858
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 2 cut(s) 568, 756
BstKTI GATC 7 cut(s) 166, 315, 324, 372, 607, 756, 802
BstMAI GTCTC 2 cut(s) 390, 625
BstMBI GATC 7 cut(s) 163, 312, 321, 369, 604, 753, 799
BstMWI GCNNNNNNNGC 2 cut(s) 205, 491
BstNI CCWGG 3 cut(s) 326, 413, 510
BstSCI CCNGG 3 cut(s) 324, 411, 508
BstSFI CTRYAG 1 cut(s) 142
BstV1I GCAGC 3 cut(s) 314, 466, 469
BstX2I RGATCY 2 cut(s) 321, 604
BstYI RGATCY 2 cut(s) 321, 604
BsuRI GGCC 1 cut(s) 420
BtgI CCRYGG 1 cut(s) 453
BtsCI GGATG 2 cut(s) 568, 756
Cac8I GCNNGC 1 cut(s) 52
CaiI CAGNNNCTG 2 cut(s) 308, 832
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 512
Csp6I GTAC 2 cut(s) 355, 583
CviAII CATG 7 cut(s) 26, 215, 454, 539, 706, 805, 811
CviQI GTAC 2 cut(s) 355, 583
DdeI CTNAG 6 cut(s) 55, 468, 521, 567, 629, 858
DpnI GATC 7 cut(s) 165, 314, 323, 371, 606, 755, 801
DpnII GATC 7 cut(s) 163, 312, 321, 369, 604, 753, 799
EaeI YGGCCR 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 453
Eco31I GGTCTC 2 cut(s) 390, 625
Eco32I GATATC 1 cut(s) 444
Eco47I GGWCC 1 cut(s) 512
EcoO109I RGGNCCY 1 cut(s) 512
EcoRII CCWGG 3 cut(s) 324, 411, 508
EcoRV GATATC 1 cut(s) 444
EcoT14I CCWWGG 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 7 cut(s) 29, 218, 457, 542, 709, 808, 814
FatI CATG 7 cut(s) 25, 214, 453, 538, 705, 804, 810
FbaI TGATCA 3 cut(s) 163, 369, 753
Fnu4HI GCNGC 3 cut(s) 303, 480, 483
FokI GGATG 2 cut(s) 575, 763
Fsp4HI GCNGC 3 cut(s) 303, 480, 483
FspBI CTAG 3 cut(s) 293, 614, 819
GluI GCNGC 3 cut(s) 303, 480, 483
GsaI CCCAGC 1 cut(s) 644
HaeIII GGCC 1 cut(s) 420
HapII CCGG 1 cut(s) 222
Hin1II CATG 7 cut(s) 29, 218, 457, 542, 709, 808, 814
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 222
HphI GGTGA 1 cut(s) 658
Hpy188I TCNGA 2 cut(s) 352, 799
Hpy188III TCNNGA 3 cut(s) 173, 819, 850
Hpy99I CGWCG 1 cut(s) 674
HpyAV CCTTC 2 cut(s) 525, 645
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 2 cut(s) 50, 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 491
HpyF3I CTNAG 6 cut(s) 55, 468, 521, 567, 629, 858
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 7 cut(s) 29, 218, 457, 542, 709, 808, 814
Ksp22I TGATCA 3 cut(s) 163, 369, 753
Kzo9I GATC 7 cut(s) 163, 312, 321, 369, 604, 753, 799
LmnI GCTCC 4 cut(s) 218, 230, 434, 829
Lsp1109I GCAGC 3 cut(s) 314, 466, 469
LweI GCATC 3 cut(s) 314, 495, 553
MaeI CTAG 3 cut(s) 293, 614, 819
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 4 cut(s) 224, 275, 283, 524
MalI GATC 7 cut(s) 165, 314, 323, 371, 606, 755, 801
MboI GATC 7 cut(s) 163, 312, 321, 369, 604, 753, 799
MboII GAAGA 2 cut(s) 205, 665
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 2 cut(s) 321, 604
MlsI TGGCCA 1 cut(s) 420
MluCI AATT 2 cut(s) 447, 474
MluNI TGGCCA 1 cut(s) 420
MmeI TCCRAC 1 cut(s) 864
Mox20I TGGCCA 1 cut(s) 420
MscI TGGCCA 1 cut(s) 420
MseI TTAA 1 cut(s) 648
MslI CAYNNNNRTG 1 cut(s) 809
Msp20I TGGCCA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 3 cut(s) 326, 413, 510
MunI CAATTG 1 cut(s) 447
MvaI CCWGG 3 cut(s) 326, 413, 510
MwoI GCNNNNNNNGC 2 cut(s) 205, 491
NcoI CCATGG 1 cut(s) 453
NdeII GATC 7 cut(s) 163, 312, 321, 369, 604, 753, 799
NlaIII CATG 7 cut(s) 29, 218, 457, 542, 709, 808, 814
NlaIV GGNNCC 5 cut(s) 220, 436, 464, 690, 796
NmuCI GTSAC 2 cut(s) 224, 275
PfeI GAWTC 1 cut(s) 138
PflMI CCANNNNNTGG 1 cut(s) 427
PkrI GCNGC 3 cut(s) 304, 481, 484
PpuMI RGGWCCY 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 512
Psp6I CCWGG 3 cut(s) 324, 411, 508
PspFI CCCAGC 1 cut(s) 640
PspGI CCWGG 3 cut(s) 324, 411, 508
PspN4I GGNNCC 5 cut(s) 220, 436, 464, 690, 796
PspPI GGNCC 1 cut(s) 512
PspPPI RGGWCCY 1 cut(s) 512
PsrI GAACNNNNNNTAC 2 cut(s) 321, 353
PstNI CAGNNNCTG 2 cut(s) 308, 832
PsuI RGATCY 2 cut(s) 321, 604
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 2 cut(s) 356, 584
RsaNI GTAC 2 cut(s) 355, 583
RseI CAYNNNNRTG 1 cut(s) 809
SaqAI TTAA 1 cut(s) 648
SatI GCNGC 3 cut(s) 303, 480, 483
Sau3AI GATC 7 cut(s) 163, 312, 321, 369, 604, 753, 799
Sau96I GGNCC 1 cut(s) 512
ScrFI CCNGG 3 cut(s) 326, 413, 510
SfaNI GCATC 3 cut(s) 314, 495, 553
SfcI CTRYAG 1 cut(s) 142
SinI GGWCC 1 cut(s) 512
SmiMI CAYNNNNRTG 1 cut(s) 809
SmlI CTYRAG 2 cut(s) 548, 848
SmoI CTYRAG 2 cut(s) 548, 848
Sse9I AATT 2 cut(s) 447, 474
SspI AATATT 1 cut(s) 866
SspMI CTAG 3 cut(s) 293, 614, 819
StyD4I CCNGG 3 cut(s) 324, 411, 508
StyI CCWWGG 1 cut(s) 453
TaiI ACGT 1 cut(s) 360
TasI AATT 2 cut(s) 447, 474
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TseFI GTSAC 2 cut(s) 224, 275
TseI GCWGC 3 cut(s) 302, 479, 482
Tsp45I GTSAC 2 cut(s) 224, 275
TspDTI ATGAA 9 cut(s) 17, 42, 86, 203, 329, 666, 691, 789, 858
TspGWI ACGGA 2 cut(s) 243, 696
Van91I CCANNNNNTGG 1 cut(s) 427
VpaK11BI GGWCC 1 cut(s) 512
XbaI TCTAGA 1 cut(s) 818
XcmI CCANNNNNNNNNTGG 2 cut(s) 185, 428
XspI CTAG 3 cut(s) 293, 614, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.