Rh1CG098400

Belongs to the universal ribosomal protein uL24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000171
Physical Location & Seq
Forward (+)
20847062 .. 20857960
10899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG098400.1

Sequence Viewer

Length: 570 bp
ATGGAGTCTCTGCCACCGCATGATAGGGTTATCCTAGTAGGGCACAACTTGGGTGGGCTCCCGATATATCTTCTCATGGAGAGGTTCCCTAGTAAAATTGCTGCTGCAGTTTTTGCCACCGCTAGCATGCCTGGTCTAAATATCATTTTGACCACCATATCTAAAGAGATAAATAGTTCTACACATGCATATGTTTTTGGAGTACAGATACTACAAGCAGCTGAGAAACTTATTAGGCACTGGAAGGTTCTTAGAGGAGACAATGTGAGGCCCGTGATGATCATAAGAGGCAAAGACAAGGGTGAGACAGGTGTCATTGAGCGAGTCATTCGCTCTCAGAATCGTGTAATTGTGGAGGGTAAAAATTTGGTAAAGAAACATATCAAGCAAGGCCAAGGTCATGAAGGTGGGATATTTACTGTTGAAGCCCCTCTTCATGCTTCAAATGTGCAAGTAACAGATCCAGTAACAGGGAGGCCTTGCAAGGTTGGGGTTAAATATCTTGAGGATGGAACAAAAGTTAGAGTAGCAAGAGGCACAGGAGCATCAGGATCTAATCCCTCGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KOW ribosomal_L24

Protein Analysis

189

Amino Acids

20.46

Weight (kDa)

10.0

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KOW PF00467 92 - 119 1e-07 KOW motif
ribosomal_L24 PF17136 122 - 182 2.3e-21 Large ribosomal subunit protein uL24, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 17, 120
AclWI GGATC 2 cut(s) 455, 559
AcsI RAATTY 1 cut(s) 364
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 470
AgsI TTSAA 2 cut(s) 425, 444
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw26I GTCTC 3 cut(s) 12, 252, 299
AlwI GGATC 2 cut(s) 455, 559
AoxI GGCC 3 cut(s) 269, 391, 476
ApeKI GCWGC 3 cut(s) 101, 104, 218
ApoI RAATTY 1 cut(s) 364
AspS9I GGNCC 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 314
AsuNHI GCTAGC 1 cut(s) 122
BaeGI GKGCMC 1 cut(s) 45
BanII GRGCYC 1 cut(s) 60
BbvI GCAGC 3 cut(s) 88, 91, 230
BccI CCATC 1 cut(s) 503
BciT130I CCWGG 1 cut(s) 132
BclI TGATCA 1 cut(s) 279
BcoDI GTCTC 3 cut(s) 12, 252, 299
BfaI CTAG 3 cut(s) 35, 90, 123
BfmI CTRYAG 1 cut(s) 105
BisI GCNGC 3 cut(s) 102, 105, 219
BlsI GCNGC 3 cut(s) 103, 106, 220
Bme1390I CCNGG 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 2 cut(s) 59, 86
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 554
BmtI GCTAGC 1 cut(s) 126
BoxI GACNNNNGTC 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 524
BsaJI CCNNGG 1 cut(s) 394
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 470
Bse1I ACTGG 2 cut(s) 245, 464
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 1 cut(s) 514
BseLI CCNNNNNNNGG 1 cut(s) 470
BseMII CTCAG 2 cut(s) 213, 350
BseNI ACTGG 2 cut(s) 245, 464
BseRI GAGGAG 1 cut(s) 270
BseSI GKGCMC 1 cut(s) 45
BseXI GCAGC 3 cut(s) 88, 91, 230
BshFI GGCC 3 cut(s) 271, 393, 478
BslI CCNNNNNNNGG 1 cut(s) 470
BsmAI GTCTC 3 cut(s) 12, 252, 299
BsnI GGCC 3 cut(s) 271, 393, 478
Bsp1286I GDGCHC 2 cut(s) 45, 60
Bsp143I GATC 3 cut(s) 279, 460, 551
BspACI CCGC 2 cut(s) 17, 120
BspANI GGCC 3 cut(s) 271, 393, 478
BspCNI CTCAG 2 cut(s) 214, 349
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 2 cut(s) 59, 86
BspMAI CTGCAG 1 cut(s) 109
BspOI GCTAGC 1 cut(s) 126
BspPI GGATC 2 cut(s) 455, 559
BsrI ACTGG 2 cut(s) 245, 464
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 3 cut(s) 279, 460, 551
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 1 cut(s) 438
BstAPI GCANNNNNTGC 1 cut(s) 113
BstC8I GCNNGC 2 cut(s) 124, 128
BstDEI CTNAG 3 cut(s) 222, 251, 336
BstF5I GGATG 1 cut(s) 514
BstKTI GATC 3 cut(s) 282, 463, 554
BstMAI GTCTC 3 cut(s) 12, 252, 299
BstMBI GATC 3 cut(s) 279, 460, 551
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 2 cut(s) 130, 188
BstPAI GACNNNNGTC 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 88, 91, 230
BstX2I RGATCY 2 cut(s) 460, 551
BstYI RGATCY 2 cut(s) 460, 551
BsuRI GGCC 3 cut(s) 271, 393, 478
BtsCI GGATG 1 cut(s) 514
BtsIMutI CAGTG 1 cut(s) 238
Cac8I GCNNGC 2 cut(s) 124, 128
CciI TCATGA 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 270
Csp6I GTAC 1 cut(s) 203
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviAII CATG 6 cut(s) 20, 76, 127, 185, 401, 437
CviJI RGCY 6 cut(s) 58, 221, 271, 393, 428, 478
CviKI_1 RGCY 6 cut(s) 58, 221, 271, 393, 428, 478
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 3 cut(s) 222, 251, 336
DpnI GATC 3 cut(s) 281, 462, 553
DpnII GATC 3 cut(s) 279, 460, 551
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco130I CCWWGG 1 cut(s) 394
Eco147I AGGCCT 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 394
EcoT22I ATGCAT 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 6 cut(s) 23, 79, 130, 188, 404, 440
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FatI CATG 6 cut(s) 19, 75, 126, 184, 400, 436
FauNDI CATATG 1 cut(s) 190
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 3 cut(s) 102, 105, 219
FokI GGATG 1 cut(s) 521
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 3 cut(s) 102, 105, 219
FspBI CTAG 3 cut(s) 35, 90, 123
GluI GCNGC 3 cut(s) 102, 105, 219
HaeIII GGCC 3 cut(s) 271, 393, 478
Hin1II CATG 6 cut(s) 23, 79, 130, 188, 404, 440
HinfI GANTC 3 cut(s) 5, 324, 340
HphI GGTGA 1 cut(s) 314
Hpy188I TCNGA 1 cut(s) 339
Hpy188III TCNNGA 5 cut(s) 61, 401, 503, 549, 567
HpyAV CCTTC 2 cut(s) 238, 398
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4V TGCA 4 cut(s) 107, 188, 451, 483
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 3 cut(s) 222, 251, 336
Hsp92II CATG 6 cut(s) 23, 79, 130, 188, 404, 440
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 3 cut(s) 279, 460, 551
LmnI GCTCC 2 cut(s) 63, 542
LpnPI CCDG 8 cut(s) 117, 144, 226, 294, 456, 477, 525, 534
Lsp1109I GCAGC 3 cut(s) 88, 91, 230
LweI GCATC 1 cut(s) 554
MaeI CTAG 3 cut(s) 35, 90, 123
MaeIII GTNAC 2 cut(s) 454, 466
MalI GATC 3 cut(s) 281, 462, 553
MboI GATC 3 cut(s) 279, 460, 551
MboII GAAGA 2 cut(s) 62, 425
MflI RGATCY 2 cut(s) 460, 551
MhlI GDGCHC 2 cut(s) 45, 60
MluCI AATT 3 cut(s) 96, 348, 364
MlyI GAGTC 2 cut(s) 14, 333
MnlI CCTC 9 cut(s) 75, 248, 261, 281, 349, 441, 468, 499, 527
Mph1103I ATGCAT 1 cut(s) 190
MseI TTAA 1 cut(s) 495
MslI CAYNNNNRTG 2 cut(s) 189, 405
MspA1I CMGCKG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeI CATATG 1 cut(s) 190
NdeII GATC 3 cut(s) 279, 460, 551
NheI GCTAGC 1 cut(s) 122
NlaIII CATG 6 cut(s) 23, 79, 130, 188, 404, 440
NlaIV GGNNCC 2 cut(s) 59, 86
NsiI ATGCAT 1 cut(s) 190
NspI RCATGY 2 cut(s) 130, 188
PaeI GCATGC 1 cut(s) 130
PagI TCATGA 1 cut(s) 400
PceI AGGCCT 1 cut(s) 478
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 3 cut(s) 103, 106, 220
PleI GAGTC 2 cut(s) 13, 332
PpsI GAGTC 2 cut(s) 13, 332
PshAI GACNNNNGTC 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 59, 86
PspPI GGNCC 1 cut(s) 270
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 2 cut(s) 460, 551
PvuII CAGCTG 1 cut(s) 221
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 2 cut(s) 189, 405
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 3 cut(s) 102, 105, 219
Sau3AI GATC 3 cut(s) 279, 460, 551
Sau96I GGNCC 1 cut(s) 270
SchI GAGTC 2 cut(s) 14, 333
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 2 cut(s) 45, 60
SetI ASST 7 cut(s) 86, 223, 249, 313, 400, 409, 489
SfaNI GCATC 1 cut(s) 554
SfcI CTRYAG 1 cut(s) 105
SmiMI CAYNNNNRTG 2 cut(s) 189, 405
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
SphI GCATGC 1 cut(s) 130
Sse9I AATT 3 cut(s) 96, 348, 364
SseBI AGGCCT 1 cut(s) 478
SsiI CCGC 2 cut(s) 17, 120
SspMI CTAG 3 cut(s) 35, 90, 123
StuI AGGCCT 1 cut(s) 478
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 421
TasI AATT 3 cut(s) 96, 348, 364
TatI WGTACW 1 cut(s) 202
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TscAI CASTG 1 cut(s) 245
TseI GCWGC 3 cut(s) 101, 104, 218
TspDTI ATGAA 2 cut(s) 417, 425
TspRI CASTG 1 cut(s) 245
XapI RAATTY 1 cut(s) 364
XceI RCATGY 2 cut(s) 130, 188
XspI CTAG 3 cut(s) 35, 90, 123
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.