Rh2CG173100

Salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000171
Physical Location & Seq
Forward (+)
15463690 .. 15464114
425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG173100.1

Sequence Viewer

Length: 327 bp
ATGGCTTCTCTACCACCGCACGAAATGGTTATCCTGGTTAGCCACAGCTTGGGTGGAATCCCCATATCTATTGCCATGGAGACCTTCCCTCATAAAATTGCTGCTGCTGTTTTTTCCACTGCTGACATGTCTGGTCCGACTCTCAATTACTCAACTATATCTAAAGAGTTTGGCAAATCTAATTATTTTACGGACACTCAATATAGATTTGATGAGGGCCCCGACAAACCTGCAACTTCGTTCCTCTATGGGCCAGAATTCATCTCCTTTTCCTTGTATCAGCTCTCGCCACCAGAGGTAAGTCTTCAAAAAAGGTGGCCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

108

Amino Acids

11.99

Weight (kDa)

5.24

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 238
AccB7I CCANNNNNTGG 1 cut(s) 49
AciI CCGC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 317
AcsI RAATTY 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 49
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 1 cut(s) 308
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 2 cut(s) 48, 283
AluI AGCT 2 cut(s) 48, 283
Alw26I GTCTC 1 cut(s) 74
AoxI GGCC 3 cut(s) 217, 251, 317
ApaI GGGCCC 1 cut(s) 221
ApeKI GCWGC 2 cut(s) 101, 104
ApoI RAATTY 1 cut(s) 257
AspS9I GGNCC 4 cut(s) 134, 217, 218, 251
AvaII GGWCC 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 221
BalI TGGCCA 1 cut(s) 319
BanII GRGCYC 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 88, 91
BcgI CGANNNNNNTGC 2 cut(s) 212, 246
BciT130I CCWGG 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 74
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 2 cut(s) 102, 105
BlsI GCNGC 2 cut(s) 103, 106
Bme1390I CCNGG 1 cut(s) 35
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 4 cut(s) 134, 217, 218, 251
BmiI GGNNCC 2 cut(s) 219, 220
BmrFI CCNGG 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 296
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 2 cut(s) 88, 91
BshFI GGCC 3 cut(s) 219, 253, 319
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 74
BsnI GGCC 3 cut(s) 219, 253, 319
Bso31I GGTCTC 1 cut(s) 74
Bsp120I GGGCCC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 221
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 1 cut(s) 17
BspANI GGCC 3 cut(s) 219, 253, 319
BspLI GGNNCC 2 cut(s) 219, 220
BspMI ACCTGC 1 cut(s) 238
BspTNI GGTCTC 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 35
BstDSI CCRYGG 1 cut(s) 75
BstMAI GTCTC 1 cut(s) 74
BstNI CCWGG 1 cut(s) 35
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 33
BstSLI GKGCMC 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 88, 91
BstV2I GAAGAC 1 cut(s) 296
BsuRI GGCC 3 cut(s) 219, 253, 319
BtgI CCRYGG 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
BveI ACCTGC 1 cut(s) 238
Cfr13I GGNCC 4 cut(s) 134, 217, 218, 251
CspCI CAANNNNNGTGG 1 cut(s) 296
CviAII CATG 2 cut(s) 76, 127
CviJI RGCY 7 cut(s) 5, 42, 48, 219, 253, 283, 319
CviKI_1 RGCY 7 cut(s) 5, 42, 48, 219, 253, 283, 319
EaeI YGGCCR 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 221
Eco31I GGTCTC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 134
EcoO109I RGGNCCY 2 cut(s) 217, 218
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 2 cut(s) 79, 130
FaiI YATR 7 cut(s) 65, 77, 93, 128, 158, 204, 249
FatI CATG 2 cut(s) 75, 126
Fnu4HI GCNGC 2 cut(s) 102, 105
FriOI GRGCYC 1 cut(s) 221
Fsp4HI GCNGC 2 cut(s) 102, 105
GluI GCNGC 2 cut(s) 102, 105
HaeIII GGCC 3 cut(s) 219, 253, 319
Hin1II CATG 2 cut(s) 79, 130
HinfI GANTC 2 cut(s) 57, 139
Hpy188I TCNGA 1 cut(s) 138
HpyAV CCTTC 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 233
Hsp92II CATG 2 cut(s) 79, 130
LpnPI CCDG 6 cut(s) 20, 47, 117, 243, 267, 306
Lsp1109I GCAGC 2 cut(s) 88, 91
MboII GAAGA 1 cut(s) 296
MhlI GDGCHC 1 cut(s) 221
MlsI TGGCCA 1 cut(s) 319
MluCI AATT 4 cut(s) 96, 145, 181, 257
MluNI TGGCCA 1 cut(s) 319
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 4 cut(s) 99, 208, 254, 289
Mox20I TGGCCA 1 cut(s) 319
MscI TGGCCA 1 cut(s) 319
Msp20I TGGCCA 1 cut(s) 319
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
NcoI CCATGG 1 cut(s) 75
NlaIII CATG 2 cut(s) 79, 130
NlaIV GGNNCC 2 cut(s) 219, 220
NspI RCATGY 1 cut(s) 130
PciI ACATGT 1 cut(s) 126
PfeI GAWTC 1 cut(s) 57
PflMI CCANNNNNTGG 1 cut(s) 49
PkrI GCNGC 2 cut(s) 103, 106
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PscI ACATGT 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 2 cut(s) 219, 220
PspOMI GGGCCC 1 cut(s) 217
PspPI GGNCC 4 cut(s) 134, 217, 218, 251
SatI GCNGC 2 cut(s) 102, 105
Sau96I GGNCC 4 cut(s) 134, 217, 218, 251
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 221
SetI ASST 6 cut(s) 50, 86, 232, 285, 300, 317
SinI GGWCC 1 cut(s) 134
Sse9I AATT 4 cut(s) 96, 145, 181, 257
SsiI CCGC 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 75
TasI AATT 4 cut(s) 96, 145, 181, 257
TfiI GAWTC 1 cut(s) 57
TscAI CASTG 1 cut(s) 124
TseI GCWGC 2 cut(s) 101, 104
TspDTI ATGAA 1 cut(s) 250
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 1 cut(s) 124
Van91I CCANNNNNTGG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 1 cut(s) 257
XceI RCATGY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.