pycom02g12910

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000171
Physical Location & Seq
Forward (+)
9475596 .. 9476940
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g12910.2

Sequence Viewer

Length: 966 bp
ATGATGCAGAAAATGGAGAACATGACAGAGAAGCTCCTTTTGTTTTTCCTTTTATTTATTTGCTTAGCAAAAGCTAGTACCTCAACGCCATCCCCGCTCCCCAACATTCACAACCAAACTCAAAGTCCAAAACATTTTGTGTTGATACATGGAGGTTGTCATGGAGCATGGAGCTGGTATAAGGTGGCCACTCTCTTGAAGTACTCAGGTCACCGTGTCACAGCTCTAGACTTGGGAGCATCCGGGATCAACCCGATTCAGGTAGAGCAACTCCCTTCGTTATCGGAATTTGTCGAGCCTTTGACAAAGCTCATGGTTTCTCTACCACCAAATGAAAAGGTTATCCTTGTGGCTCACAGCTATGGTGGTGCCGTCATATCTATCTTCATGGAGAGGTTCTCTCAGAAAATTTCTGCTGCGGTGTATGTGACAGCTATCATGTCTGGTCCTACTCTTAATTTCTCAACTATATTTGCAGAGGCTACCAAAAGATTTGACTTTAAGGACTCTCAATTCAGATATGACAACGGAACCAACAACCCTGCAACCTCCTTTATCTTTGGGCCTAAAGCCTTGGCGACAAGCTTGTACCAGCTCTCACCACCATATGATTTAACCTTAGGGTTATTGTTGGTGAGATTTGTTCCTCTGTACAATTATGATGTAATAAAGCTCACGAAAGAGAAATATGGATCAGTTCCTAGAGTATTCATTGTGTCCCGCCAAGACCATGCGATTGTGTTGGATGTGCAAAAGTTTACGATCAAGAACAATCCGCCAAATGAAGTGAAAGTGATAAACGGATCTTCGATGCGATCGATCACATGGTCATGCTCTCTAAACCCGTGGAGTTGTTCTTCCATCTCCAAAATATCGCTGAGAAATATCATAAACACAGACATGGTTAATTCCGGCATACTAGCTTGCGTCCAATGCACCACATGTAACATATGTATGTATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

322

Amino Acids

35.72

Weight (kDa)

9.12

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 368
AccBSI CCGCTC 1 cut(s) 97
AciI CCGC 4 cut(s) 95, 419, 721, 776
AclWI GGATC 3 cut(s) 254, 700, 811
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 2 cut(s) 287, 408
AfaI GTAC 4 cut(s) 79, 203, 590, 653
AfiI CCNNNNNNNGG 1 cut(s) 259
AflIII ACRYGT 1 cut(s) 941
AgsI TTSAA 1 cut(s) 199
AlwI GGATC 3 cut(s) 254, 700, 811
AoxI GGCC 2 cut(s) 186, 563
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 2 cut(s) 287, 408
ArsI GACNNNNNNTTYG 2 cut(s) 109, 141
AspS9I GGNCC 2 cut(s) 446, 563
AsuC2I CCSGG 1 cut(s) 244
AsuHPI GGTGA 3 cut(s) 203, 591, 646
AvaII GGWCC 1 cut(s) 446
AxyI CCTNAGG 1 cut(s) 619
BalI TGGCCA 1 cut(s) 188
BanI GGYRCC 1 cut(s) 368
BbvI GCAGC 1 cut(s) 403
BccI CCATC 2 cut(s) 97, 869
BceAI ACGGC 1 cut(s) 356
BcnI CCSGG 1 cut(s) 244
BfaI CTAG 4 cut(s) 75, 227, 702, 920
BisI GCNGC 1 cut(s) 417
BlpI GCTNAGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 418
BmcAI AGTACT 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 244
Bme18I GGWCC 1 cut(s) 446
BmgT120I GGNCC 2 cut(s) 446, 563
BmiI GGNNCC 2 cut(s) 370, 532
BmrFI CCNGG 1 cut(s) 244
BmsI GCATC 2 cut(s) 248, 801
BplI GAGNNNNNCTC 4 cut(s) 383, 415, 385, 417
Bpu1102I GCTNAGC 1 cut(s) 64
BpuMI CCSGG 1 cut(s) 244
Bsa29I ATCGAT 1 cut(s) 818
BsaJI CCNNGG 2 cut(s) 573, 845
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse21I CCTNAGG 1 cut(s) 619
BseCI ATCGAT 1 cut(s) 818
BseDI CCNNGG 2 cut(s) 573, 845
BseGI GGATG 3 cut(s) 89, 239, 751
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 3 cut(s) 219, 416, 869
BseXI GCAGC 1 cut(s) 403
Bsh1285I CGRYCG 1 cut(s) 818
BshFI GGCC 2 cut(s) 188, 565
BshNI GGYRCC 1 cut(s) 368
BshVI ATCGAT 1 cut(s) 818
BsiEI CGRYCG 1 cut(s) 818
BsiSI CCGG 2 cut(s) 243, 912
BslFI GGGAC 1 cut(s) 703
BslI CCNNNNNNNGG 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 703
BsnI GGCC 2 cut(s) 188, 565
Bsp1407I TGTACA 1 cut(s) 651
Bsp143I GATC 6 cut(s) 246, 692, 762, 803, 815, 819
Bsp1720I GCTNAGC 1 cut(s) 64
BspACI CCGC 4 cut(s) 95, 419, 721, 776
BspANI GGCC 2 cut(s) 188, 565
BspCNI CTCAG 3 cut(s) 218, 415, 870
BspDI ATCGAT 1 cut(s) 818
BspLI GGNNCC 2 cut(s) 370, 532
BspPI GGATC 3 cut(s) 254, 700, 811
BspT107I GGYRCC 1 cut(s) 368
BsrBI CCGCTC 1 cut(s) 97
BsrGI TGTACA 1 cut(s) 651
BssECI CCNNGG 2 cut(s) 573, 845
BssMI GATC 6 cut(s) 246, 692, 762, 803, 815, 819
BssT1I CCWWGG 1 cut(s) 573
Bst4CI ACNGT 1 cut(s) 215
BstAUI TGTACA 1 cut(s) 651
BstC8I GCNNGC 1 cut(s) 925
BstDEI CTNAG 5 cut(s) 64, 205, 402, 619, 878
BstDSI CCRYGG 1 cut(s) 845
BstEII GGTNACC 1 cut(s) 209
BstF5I GGATG 3 cut(s) 89, 239, 751
BstKTI GATC 6 cut(s) 249, 695, 765, 806, 818, 822
BstMBI GATC 6 cut(s) 246, 692, 762, 803, 815, 819
BstMCI CGRYCG 1 cut(s) 818
BstMWI GCNNNNNNNGC 2 cut(s) 94, 933
BstNSI RCATGY 1 cut(s) 945
BstPI GGTNACC 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 242
BstV1I GCAGC 1 cut(s) 403
BstX2I RGATCY 1 cut(s) 803
BstYI RGATCY 1 cut(s) 803
Bsu15I ATCGAT 1 cut(s) 818
Bsu36I CCTNAGG 1 cut(s) 619
BsuRI GGCC 2 cut(s) 188, 565
BsuTUI ATCGAT 1 cut(s) 818
BtgI CCRYGG 1 cut(s) 845
BtsCI GGATG 3 cut(s) 89, 239, 751
Cac8I GCNNGC 1 cut(s) 925
Cfr13I GGNCC 2 cut(s) 446, 563
ClaI ATCGAT 1 cut(s) 818
CseI GACGC 1 cut(s) 916
Csp6I GTAC 4 cut(s) 78, 202, 589, 652
CviQI GTAC 4 cut(s) 78, 202, 589, 652
DdeI CTNAG 5 cut(s) 64, 205, 402, 619, 878
DpnI GATC 6 cut(s) 248, 694, 764, 805, 817, 821
DpnII GATC 6 cut(s) 246, 692, 762, 803, 815, 819
EaeI YGGCCR 1 cut(s) 186
EciI GGCGGA 1 cut(s) 765
Eco130I CCWWGG 1 cut(s) 573
Eco47I GGWCC 1 cut(s) 446
Eco81I CCTNAGG 1 cut(s) 619
Eco91I GGTNACC 1 cut(s) 209
EcoO65I GGTNACC 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 573
ErhI CCWWGG 1 cut(s) 573
FaqI GGGAC 1 cut(s) 703
FauI CCCGC 2 cut(s) 102, 728
FauNDI CATATG 2 cut(s) 607, 950
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 3 cut(s) 76, 226, 758
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 4 cut(s) 75, 227, 702, 920
GluI GCNGC 1 cut(s) 417
HaeIII GGCC 2 cut(s) 188, 565
HapII CCGG 2 cut(s) 243, 912
HgaI GACGC 1 cut(s) 916
HindIII AAGCTT 1 cut(s) 583
HinfI GANTC 2 cut(s) 256, 506
HpaII CCGG 2 cut(s) 243, 912
HphI GGTGA 3 cut(s) 203, 591, 646
Hpy166II GTNNAC 1 cut(s) 759
Hpy188I TCNGA 3 cut(s) 286, 405, 518
Hpy188III TCNNGA 4 cut(s) 196, 227, 676, 766
Hpy8I GTNNAC 1 cut(s) 759
HpyAV CCTTC 1 cut(s) 285
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 5 cut(s) 7, 476, 545, 751, 936
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 933
HpyF3I CTNAG 5 cut(s) 64, 205, 402, 619, 878
Kzo9I GATC 6 cut(s) 246, 692, 762, 803, 815, 819
LmnI GCTCC 5 cut(s) 39, 102, 164, 171, 236
LpnPI CCDG 8 cut(s) 160, 192, 245, 256, 429, 555, 605, 925
Lsp1109I GCAGC 1 cut(s) 403
LweI GCATC 2 cut(s) 248, 801
MaeI CTAG 4 cut(s) 75, 227, 702, 920
MaeIII GTNAC 4 cut(s) 209, 217, 427, 944
MalI GATC 6 cut(s) 248, 694, 764, 805, 817, 821
MbiI CCGCTC 1 cut(s) 97
MboI GATC 6 cut(s) 246, 692, 762, 803, 815, 819
MboII GAAGA 3 cut(s) 376, 798, 849
MflI RGATCY 1 cut(s) 803
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 7 cut(s) 287, 408, 457, 512, 655, 907, 961
MluNI TGGCCA 1 cut(s) 188
MlyI GAGTC 1 cut(s) 500
MmeI TCCRAC 1 cut(s) 723
MnlI CCTC 6 cut(s) 91, 146, 387, 472, 559, 657
Mox20I TGGCCA 1 cut(s) 188
MscI TGGCCA 1 cut(s) 188
MseI TTAA 4 cut(s) 456, 501, 614, 906
MslI CAYNNNNRTG 4 cut(s) 360, 829, 899, 953
Msp20I TGGCCA 1 cut(s) 188
MspI CCGG 2 cut(s) 243, 912
MspR9I CCNGG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 94, 933
NciI CCSGG 1 cut(s) 244
NdeI CATATG 2 cut(s) 607, 950
NdeII GATC 6 cut(s) 246, 692, 762, 803, 815, 819
NlaIV GGNNCC 2 cut(s) 370, 532
NmuCI GTSAC 3 cut(s) 209, 217, 427
NspI RCATGY 1 cut(s) 945
PciI ACATGT 1 cut(s) 941
PcsI WCGNNNNNNNCGW 1 cut(s) 815
PfeI GAWTC 1 cut(s) 256
PfoI TCCNGGA 1 cut(s) 242
PkrI GCNGC 1 cut(s) 418
Ple19I CGATCG 1 cut(s) 818
PleI GAGTC 1 cut(s) 500
PpsI GAGTC 1 cut(s) 500
PscI ACATGT 1 cut(s) 941
PspEI GGTNACC 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 370, 532
PspPI GGNCC 2 cut(s) 446, 563
PsuI RGATCY 1 cut(s) 803
PvuI CGATCG 1 cut(s) 818
RsaI GTAC 4 cut(s) 79, 203, 590, 653
RsaNI GTAC 4 cut(s) 78, 202, 589, 652
RseI CAYNNNNRTG 4 cut(s) 360, 829, 899, 953
SaqAI TTAA 4 cut(s) 456, 501, 614, 906
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 6 cut(s) 246, 692, 762, 803, 815, 819
Sau96I GGNCC 2 cut(s) 446, 563
ScaI AGTACT 1 cut(s) 203
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 1 cut(s) 244
SfaNI GCATC 2 cut(s) 248, 801
SinI GGWCC 1 cut(s) 446
SmiMI CAYNNNNRTG 4 cut(s) 360, 829, 899, 953
Sse9I AATT 7 cut(s) 287, 408, 457, 512, 655, 907, 961
SsiI CCGC 4 cut(s) 95, 419, 721, 776
SspMI CTAG 4 cut(s) 75, 227, 702, 920
StyD4I CCNGG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 573
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 3 cut(s) 294, 809, 818
TasI AATT 7 cut(s) 287, 408, 457, 512, 655, 907, 961
TatI WGTACW 2 cut(s) 201, 651
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 4 cut(s) 456, 501, 614, 906
Tru9I TTAA 4 cut(s) 456, 501, 614, 906
TseFI GTSAC 3 cut(s) 209, 217, 427
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 3 cut(s) 209, 217, 427
TspDTI ATGAA 4 cut(s) 348, 376, 700, 798
TspGWI ACGGA 2 cut(s) 543, 816
VpaK11BI GGWCC 1 cut(s) 446
XapI RAATTY 2 cut(s) 287, 408
XbaI TCTAGA 1 cut(s) 226
XceI RCATGY 1 cut(s) 945
XspI CTAG 4 cut(s) 75, 227, 702, 920
ZrmI AGTACT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.