Rh1CG097200

Methylketone synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000171
Physical Location & Seq
Reverse (-)
20758629 .. 20759845
1217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG097200.1

Sequence Viewer

Length: 930 bp
ATGAAGGATTTGGGTTCCTCCAAGTATATAAGCAAGACCAGAGCACATGCAGGCTTAGGAAAGACTCTGGTGAAAATGGAGAATATAAGACTGAAGCATTTCGTGCCTTTTCTTTTGCTTCTTTGCTTGGCAAGAATCTGTACTAATATTGTTGAAGCTGACCAAATCTCATCTGGGAAGAAGCATTTTGTGCTGGTTCATGGAGCTGGTCACGGAGCTTGGTGTTGGTATAAGCTGGCAACTCTATTGAACTCTACAGGTCACAATGTTACAACTATAGACCTTGCAGCATCCGGTATCAACCCGATCCAGGTACAGCAAGTTCATTCGTTCTCAGACTATGTTGAGCCATTGATCAAATTTCTGGGGTCTCTGTTACCAAAAGAGAGGGTTATCCTGGTTGGCCACAGCATGGGTGGGGCTGTGATATCAATTGCCATGGAGAGGTTCCCTGAGAAAATTGCTGCAGCTGTTTATGCCACTGCTTTGATGCCTGGTCCTGCTCTGAGTTACTTGACTATTTTTGAGAAGATTCAGGAAAGATCGGTGTTGACTGACACCCAGTATAGATATGATCAGGGGGCCAACAATCCTCCAACCTCGCTACTCTTTGGACCAAAACAATTGTCTTCGAGACTGTACCAGCTATCGCCACCAGAGGATCTAGAACTAGCATTGTCATTGGTGAGATTTTCCCCTCTATTTATTGAAGAAATAAAACTCACTGAGGAGAAGTACGGATTGGTTCCAAGAGTTTTCATCGTGTGCGACCAGGACCTTTCAATAGAGGAGGATCTGCAAACGTGGATGATCAGGAAAAATCCCCCAAATGAAGTGAAGGTGATAAATGGTTCCGATCACATGGTCATGTTCTCTAGACCATTGGAGCTGTTCTCCAACCTCCTGAACGTTGCTGAGAAATATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

309

Amino Acids

34.51

Weight (kDa)

7.71

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 60 - 166 2.5e-13 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 62 - 294 6.4e-21 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 63 - 298 1.5e-23 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 412
AclI AACGTT 1 cut(s) 909
AclWI GGATC 3 cut(s) 301, 669, 801
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 113
AfaI GTAC 4 cut(s) 142, 315, 641, 737
AfiI CCNNNNNNNGG 3 cut(s) 310, 412, 444
AgsI TTSAA 4 cut(s) 155, 250, 710, 783
AjnI CCWGG 4 cut(s) 309, 396, 493, 771
AjuI GAANNNNNNNTTGG 2 cut(s) 725, 757
AluBI AGCT 7 cut(s) 158, 206, 218, 235, 470, 646, 889
AluI AGCT 7 cut(s) 158, 206, 218, 235, 470, 646, 889
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 2 cut(s) 375, 628
AlwI GGATC 3 cut(s) 301, 669, 801
AoxI GGCC 2 cut(s) 403, 582
ApeKI GCWGC 3 cut(s) 287, 464, 467
ApoI RAATTY 1 cut(s) 359
ArsI GACNNNNNNTTYG 2 cut(s) 611, 643
Asp700I GAANNNNTTC 1 cut(s) 98
AspS9I GGNCC 4 cut(s) 497, 582, 614, 775
AsuHPI GGTGA 3 cut(s) 82, 697, 853
AvaII GGWCC 3 cut(s) 497, 614, 775
BalI TGGCCA 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 621
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 3 cut(s) 299, 451, 479
BciT130I CCWGG 4 cut(s) 311, 398, 495, 773
BclI TGATCA 3 cut(s) 354, 574, 810
BcoDI GTCTC 2 cut(s) 375, 628
BfaI CTAG 3 cut(s) 665, 671, 876
BfmI CTRYAG 3 cut(s) 255, 276, 465
BisI GCNGC 3 cut(s) 288, 465, 468
BlsI GCNGC 3 cut(s) 289, 466, 469
Bme1390I CCNGG 4 cut(s) 311, 398, 495, 773
Bme18I GGWCC 3 cut(s) 497, 614, 775
BmgT120I GGNCC 4 cut(s) 497, 582, 614, 775
BmiI GGNNCC 5 cut(s) 16, 449, 583, 747, 853
BmrFI CCNGG 4 cut(s) 311, 398, 495, 773
BmrI ACTGGG 1 cut(s) 556
BmsI GCATC 2 cut(s) 299, 480
BmuI ACTGGG 1 cut(s) 556
BpiI GAAGAC 1 cut(s) 621
BplI GAGNNNNNCTC 2 cut(s) 878, 910
Bpu10I CCTNAGC 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 438
BsaWI WCCGGW 1 cut(s) 293
Bsc4I CCNNNNNNNGG 3 cut(s) 310, 412, 444
Bse1I ACTGG 1 cut(s) 562
BseBI CCWGG 4 cut(s) 311, 398, 495, 773
BseDI CCNNGG 1 cut(s) 438
BseGI GGATG 2 cut(s) 290, 813
BseLI CCNNNNNNNGG 3 cut(s) 310, 412, 444
BseMII CTCAG 5 cut(s) 348, 444, 497, 717, 906
BseNI ACTGG 1 cut(s) 562
BseRI GAGGAG 2 cut(s) 743, 803
BseXI GCAGC 3 cut(s) 299, 451, 479
BshFI GGCC 2 cut(s) 405, 584
BsiHKAI GWGCWC 1 cut(s) 46
BsiSI CCGG 1 cut(s) 294
BslI CCNNNNNNNGG 3 cut(s) 310, 412, 444
BsmAI GTCTC 2 cut(s) 375, 628
BsnI GGCC 2 cut(s) 405, 584
Bso31I GGTCTC 1 cut(s) 375
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 8 cut(s) 306, 354, 542, 574, 661, 793, 810, 856
Bsp19I CCATGG 1 cut(s) 438
BspANI GGCC 2 cut(s) 405, 584
BspCNI CTCAG 5 cut(s) 347, 445, 498, 718, 907
BspLI GGNNCC 5 cut(s) 16, 449, 583, 747, 853
BspMAI CTGCAG 1 cut(s) 469
BspPI GGATC 3 cut(s) 301, 669, 801
BspTNI GGTCTC 1 cut(s) 375
BsrI ACTGG 1 cut(s) 562
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 8 cut(s) 306, 354, 542, 574, 661, 793, 810, 856
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 4 cut(s) 311, 398, 495, 773
Bst4CI ACNGT 1 cut(s) 639
BstAPI GCANNNNNTGC 2 cut(s) 103, 190
BstC8I GCNNGC 2 cut(s) 52, 237
BstDEI CTNAG 6 cut(s) 55, 334, 453, 506, 726, 915
BstDSI CCRYGG 1 cut(s) 438
BstF5I GGATG 2 cut(s) 290, 813
BstKTI GATC 8 cut(s) 309, 357, 545, 577, 664, 796, 813, 859
BstMAI GTCTC 2 cut(s) 375, 628
BstMBI GATC 8 cut(s) 306, 354, 542, 574, 661, 793, 810, 856
BstMWI GCNNNNNNNGC 3 cut(s) 103, 190, 476
BstNI CCWGG 4 cut(s) 311, 398, 495, 773
BstNSI RCATGY 1 cut(s) 50
BstSCI CCNGG 4 cut(s) 309, 396, 493, 771
BstSFI CTRYAG 3 cut(s) 255, 276, 465
BstV1I GCAGC 3 cut(s) 299, 451, 479
BstV2I GAAGAC 1 cut(s) 621
BstX2I RGATCY 2 cut(s) 661, 793
BstYI RGATCY 2 cut(s) 661, 793
BsuRI GGCC 2 cut(s) 405, 584
BtgI CCRYGG 1 cut(s) 438
BtsCI GGATG 2 cut(s) 290, 813
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 2 cut(s) 480, 723
Cac8I GCNNGC 2 cut(s) 52, 237
Cfr13I GGNCC 4 cut(s) 497, 582, 614, 775
Csp6I GTAC 4 cut(s) 141, 314, 640, 736
CviAII CATG 6 cut(s) 47, 200, 412, 439, 862, 868
CviQI GTAC 4 cut(s) 141, 314, 640, 736
DdeI CTNAG 6 cut(s) 55, 334, 453, 506, 726, 915
DpnI GATC 8 cut(s) 308, 356, 544, 576, 663, 795, 812, 858
DpnII GATC 8 cut(s) 306, 354, 542, 574, 661, 793, 810, 856
EaeI YGGCCR 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 438
Eco31I GGTCTC 1 cut(s) 375
Eco32I GATATC 1 cut(s) 429
Eco47I GGWCC 3 cut(s) 497, 614, 775
Eco57I CTGAAG 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 775
EcoRII CCWGG 4 cut(s) 309, 396, 493, 771
EcoRV GATATC 1 cut(s) 429
EcoT14I CCWWGG 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 6 cut(s) 50, 203, 415, 442, 865, 871
FatI CATG 6 cut(s) 46, 199, 411, 438, 861, 867
FbaI TGATCA 3 cut(s) 354, 574, 810
Fnu4HI GCNGC 3 cut(s) 288, 465, 468
FokI GGATG 2 cut(s) 277, 820
Fsp4HI GCNGC 3 cut(s) 288, 465, 468
FspBI CTAG 3 cut(s) 665, 671, 876
GluI GCNGC 3 cut(s) 288, 465, 468
HaeIII GGCC 2 cut(s) 405, 584
HapII CCGG 1 cut(s) 294
Hin1II CATG 6 cut(s) 50, 203, 415, 442, 865, 871
HincII GTYRAC 1 cut(s) 552
HindII GTYRAC 1 cut(s) 552
HinfI GANTC 3 cut(s) 64, 135, 532
HpaII CCGG 1 cut(s) 294
HphI GGTGA 3 cut(s) 82, 697, 853
Hpy166II GTNNAC 1 cut(s) 552
Hpy188I TCNGA 3 cut(s) 337, 507, 856
Hpy188III TCNNGA 6 cut(s) 536, 633, 665, 814, 876, 904
Hpy8I GTNNAC 1 cut(s) 552
HpyAV CCTTC 1 cut(s) 832
HpyCH4III ACNGT 1 cut(s) 639
HpyCH4IV ACGT 2 cut(s) 803, 909
HpyCH4V TGCA 4 cut(s) 50, 287, 467, 799
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 190, 476
HpyF3I CTNAG 6 cut(s) 55, 334, 453, 506, 726, 915
HpySE526I ACGT 2 cut(s) 803, 909
Hsp92II CATG 6 cut(s) 50, 203, 415, 442, 865, 871
Ksp22I TGATCA 3 cut(s) 354, 574, 810
Kzo9I GATC 8 cut(s) 306, 354, 542, 574, 661, 793, 810, 856
LmnI GCTCC 3 cut(s) 203, 215, 886
Lsp1109I GCAGC 3 cut(s) 299, 451, 479
LweI GCATC 2 cut(s) 299, 480
MaeI CTAG 3 cut(s) 665, 671, 876
MaeII ACGT 2 cut(s) 803, 909
MaeIII GTNAC 5 cut(s) 209, 260, 268, 375, 509
MalI GATC 8 cut(s) 308, 356, 544, 576, 663, 795, 812, 858
MboI GATC 8 cut(s) 306, 354, 542, 574, 661, 793, 810, 856
MboII GAAGA 4 cut(s) 190, 541, 621, 722
MfeI CAATTG 2 cut(s) 432, 623
MflI RGATCY 2 cut(s) 661, 793
MhlI GDGCHC 1 cut(s) 46
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 4 cut(s) 359, 432, 459, 623
MluNI TGGCCA 1 cut(s) 405
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 2 cut(s) 620, 921
Mox20I TGGCCA 1 cut(s) 405
MroXI GAANNNNTTC 1 cut(s) 98
MscI TGGCCA 1 cut(s) 405
MseI TTAA 1 cut(s) 928
MslI CAYNNNNRTG 1 cut(s) 866
Msp20I TGGCCA 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 4 cut(s) 311, 398, 495, 773
MunI CAATTG 2 cut(s) 432, 623
MvaI CCWGG 4 cut(s) 311, 398, 495, 773
MwoI GCNNNNNNNGC 3 cut(s) 103, 190, 476
NcoI CCATGG 1 cut(s) 438
NdeII GATC 8 cut(s) 306, 354, 542, 574, 661, 793, 810, 856
NlaIII CATG 6 cut(s) 50, 203, 415, 442, 865, 871
NlaIV GGNNCC 5 cut(s) 16, 449, 583, 747, 853
NmuCI GTSAC 2 cut(s) 209, 260
NspI RCATGY 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 2 cut(s) 135, 532
PflMI CCANNNNNTGG 1 cut(s) 412
PkrI GCNGC 3 cut(s) 289, 466, 469
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PpuMI RGGWCCY 1 cut(s) 775
Psp1406I AACGTT 1 cut(s) 909
Psp5II RGGWCCY 1 cut(s) 775
Psp6I CCWGG 4 cut(s) 309, 396, 493, 771
PspGI CCWGG 4 cut(s) 309, 396, 493, 771
PspN4I GGNNCC 5 cut(s) 16, 449, 583, 747, 853
PspPI GGNCC 4 cut(s) 497, 582, 614, 775
PspPPI RGGWCCY 1 cut(s) 775
PsrI GAACNNNNNNTAC 2 cut(s) 306, 338
PstI CTGCAG 1 cut(s) 469
PsuI RGATCY 2 cut(s) 661, 793
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 4 cut(s) 142, 315, 641, 737
RsaNI GTAC 4 cut(s) 141, 314, 640, 736
RseI CAYNNNNRTG 1 cut(s) 866
SaqAI TTAA 1 cut(s) 928
SatI GCNGC 3 cut(s) 288, 465, 468
Sau3AI GATC 8 cut(s) 306, 354, 542, 574, 661, 793, 810, 856
Sau96I GGNCC 4 cut(s) 497, 582, 614, 775
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 4 cut(s) 311, 398, 495, 773
SduI GDGCHC 1 cut(s) 46
SfaNI GCATC 2 cut(s) 299, 480
SfcI CTRYAG 3 cut(s) 255, 276, 465
SinI GGWCC 3 cut(s) 497, 614, 775
SmiMI CAYNNNNRTG 1 cut(s) 866
Sse9I AATT 4 cut(s) 359, 432, 459, 623
SspI AATATT 2 cut(s) 148, 923
SspMI CTAG 3 cut(s) 665, 671, 876
StyD4I CCNGG 4 cut(s) 309, 396, 493, 771
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 1 cut(s) 639
TaiI ACGT 2 cut(s) 806, 912
TaqI TCGA 1 cut(s) 632
TasI AATT 4 cut(s) 359, 432, 459, 623
TatI WGTACW 1 cut(s) 140
TfiI GAWTC 2 cut(s) 135, 532
Tru1I TTAA 1 cut(s) 928
Tru9I TTAA 1 cut(s) 928
TscAI CASTG 2 cut(s) 487, 730
TseFI GTSAC 2 cut(s) 209, 260
TseI GCWGC 3 cut(s) 287, 464, 467
Tsp45I GTSAC 2 cut(s) 209, 260
TspDTI ATGAA 5 cut(s) 17, 188, 314, 748, 846
TspGWI ACGGA 2 cut(s) 228, 753
TspRI CASTG 2 cut(s) 487, 730
Van91I CCANNNNNTGG 1 cut(s) 412
VpaK11BI GGWCC 3 cut(s) 497, 614, 775
XapI RAATTY 1 cut(s) 359
XbaI TCTAGA 2 cut(s) 664, 875
XceI RCATGY 1 cut(s) 50
XcmI CCANNNNNNNNNTGG 2 cut(s) 170, 413
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 3 cut(s) 665, 671, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.