Rmu_sc0014704.1_g000001

Methylketone synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014704.1
OG0000171
Physical Location & Seq
Forward (+)
33 .. 693
661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014704.1_g000001.1.cds

Sequence Viewer

Length: 566 bp
atgagagtgaagcattttgtgccttttcttttgcttctttgcttggcaaaaatctgtactaatattgttgcaactgaccatatctcatctgggaagaagcattttgtgctggttcatggagctggtcacggagcttggtgttggtataagctggcaactctattgaactccacaggtcacaatgttacaactctagaccttgcagcatccggtatcaacccgatccaggtacagcaagttcattcgttctcagactacgttgagccattgatcaaatttctggggtctctgttaccaaaagagagggttatcctggttggccacagcatgggtggggcggtgatatcaattgccatggagaggttccctgagaaaattgctgcagctgtttatgccactgcttttatgcctggtcctgctctgagttacttgactatttttgagaagattcaggaaacattggtgtcagctgacgttcagtatagatatgatcagggggccaacaaacctccaacctcgctactcgctggaccaaaactattgtcttcgagagtgtaccagctatc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

189

Amino Acids

20.62

Weight (kDa)

9.15

Isoelectric Point (pI)

25.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 328
AciI CCGC 1 cut(s) 338
AclWI GGATC 1 cut(s) 217
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 1 cut(s) 275
AfaI GTAC 3 cut(s) 58, 231, 557
AfiI CCNNNNNNNGG 3 cut(s) 226, 328, 360
AgsI TTSAA 1 cut(s) 166
AjnI CCWGG 3 cut(s) 225, 312, 409
AluBI AGCT 6 cut(s) 122, 134, 151, 386, 470, 562
AluI AGCT 6 cut(s) 122, 134, 151, 386, 470, 562
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 1 cut(s) 217
AoxI GGCC 2 cut(s) 319, 498
ApeKI GCWGC 3 cut(s) 203, 380, 383
ApoI RAATTY 1 cut(s) 275
ArsI GACNNNNNNTTYG 2 cut(s) 527, 559
AspS9I GGNCC 3 cut(s) 413, 498, 530
AsuHPI GGTGA 1 cut(s) 352
AvaII GGWCC 2 cut(s) 413, 530
BalI TGGCCA 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 537
BbvI GCAGC 3 cut(s) 215, 367, 395
BciT130I CCWGG 3 cut(s) 227, 314, 411
BclI TGATCA 2 cut(s) 270, 490
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 1 cut(s) 194
BfmI CTRYAG 1 cut(s) 381
BisI GCNGC 3 cut(s) 204, 381, 384
BlsI GCNGC 3 cut(s) 205, 382, 385
Bme1390I CCNGG 3 cut(s) 227, 314, 411
Bme18I GGWCC 2 cut(s) 413, 530
BmgT120I GGNCC 3 cut(s) 413, 498, 530
BmiI GGNNCC 2 cut(s) 365, 499
BmrFI CCNGG 3 cut(s) 227, 314, 411
BmsI GCATC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 537
BsaI GGTCTC 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 354
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 328, 360
BseBI CCWGG 3 cut(s) 227, 314, 411
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 3 cut(s) 226, 328, 360
BseMII CTCAG 3 cut(s) 264, 360, 413
BseXI GCAGC 3 cut(s) 215, 367, 395
BshFI GGCC 2 cut(s) 321, 500
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 3 cut(s) 226, 328, 360
BsmAI GTCTC 1 cut(s) 291
BsnI GGCC 2 cut(s) 321, 500
Bso31I GGTCTC 1 cut(s) 291
Bsp143I GATC 3 cut(s) 222, 270, 490
Bsp19I CCATGG 1 cut(s) 354
BspACI CCGC 1 cut(s) 338
BspANI GGCC 2 cut(s) 321, 500
BspCNI CTCAG 3 cut(s) 263, 361, 414
BspLI GGNNCC 2 cut(s) 365, 499
BspMAI CTGCAG 1 cut(s) 385
BspPI GGATC 1 cut(s) 217
BspTNI GGTCTC 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 3 cut(s) 222, 270, 490
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 3 cut(s) 227, 314, 411
BstAPI GCANNNNNTGC 2 cut(s) 19, 106
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 3 cut(s) 250, 369, 422
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 1 cut(s) 206
BstKTI GATC 3 cut(s) 225, 273, 493
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 3 cut(s) 222, 270, 490
BstMWI GCNNNNNNNGC 3 cut(s) 19, 106, 392
BstNI CCWGG 3 cut(s) 227, 314, 411
BstSCI CCNGG 3 cut(s) 225, 312, 409
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 3 cut(s) 215, 367, 395
BstV2I GAAGAC 1 cut(s) 537
BsuRI GGCC 2 cut(s) 321, 500
BtgI CCRYGG 1 cut(s) 354
BtsCI GGATG 1 cut(s) 206
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 1 cut(s) 153
Cfr13I GGNCC 3 cut(s) 413, 498, 530
Csp6I GTAC 3 cut(s) 57, 230, 556
CviAII CATG 3 cut(s) 116, 328, 355
CviJI RGCY 9 cut(s) 122, 134, 151, 265, 321, 386, 470, 500, 562
CviKI_1 RGCY 9 cut(s) 122, 134, 151, 265, 321, 386, 470, 500, 562
CviQI GTAC 3 cut(s) 57, 230, 556
DdeI CTNAG 3 cut(s) 250, 369, 422
DpnI GATC 3 cut(s) 224, 272, 492
DpnII GATC 3 cut(s) 222, 270, 490
EaeI YGGCCR 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 291
Eco32I GATATC 1 cut(s) 345
Eco47I GGWCC 2 cut(s) 413, 530
EcoRII CCWGG 3 cut(s) 225, 312, 409
EcoRV GATATC 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 3 cut(s) 119, 331, 358
FaiI YATR 9 cut(s) 81, 117, 147, 329, 356, 393, 407, 483, 489
FatI CATG 3 cut(s) 115, 327, 354
FbaI TGATCA 2 cut(s) 270, 490
Fnu4HI GCNGC 3 cut(s) 204, 381, 384
FokI GGATG 1 cut(s) 193
Fsp4HI GCNGC 3 cut(s) 204, 381, 384
FspBI CTAG 1 cut(s) 194
GluI GCNGC 3 cut(s) 204, 381, 384
HaeIII GGCC 2 cut(s) 321, 500
HapII CCGG 1 cut(s) 210
Hin1II CATG 3 cut(s) 119, 331, 358
HinfI GANTC 1 cut(s) 448
HpaII CCGG 1 cut(s) 210
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 1 cut(s) 556
Hpy188I TCNGA 2 cut(s) 253, 423
Hpy188III TCNNGA 3 cut(s) 194, 452, 549
Hpy8I GTNNAC 1 cut(s) 556
HpyCH4IV ACGT 2 cut(s) 258, 474
HpyCH4V TGCA 3 cut(s) 71, 203, 383
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 106, 392
HpyF3I CTNAG 3 cut(s) 250, 369, 422
HpySE526I ACGT 2 cut(s) 258, 474
Hsp92II CATG 3 cut(s) 119, 331, 358
Ksp22I TGATCA 2 cut(s) 270, 490
Kzo9I GATC 3 cut(s) 222, 270, 490
LmnI GCTCC 2 cut(s) 119, 131
Lsp1109I GCAGC 3 cut(s) 215, 367, 395
LweI GCATC 1 cut(s) 215
MaeI CTAG 1 cut(s) 194
MaeII ACGT 2 cut(s) 258, 474
MaeIII GTNAC 5 cut(s) 125, 176, 184, 291, 425
MalI GATC 3 cut(s) 224, 272, 492
MboI GATC 3 cut(s) 222, 270, 490
MboII GAAGA 3 cut(s) 106, 457, 537
MfeI CAATTG 1 cut(s) 348
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 3 cut(s) 275, 348, 375
MluNI TGGCCA 1 cut(s) 321
MmeI TCCRAC 1 cut(s) 536
MnlI CCTC 4 cut(s) 297, 354, 519, 526
Mox20I TGGCCA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 321
MspA1I CMGCKG 2 cut(s) 386, 470
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 3 cut(s) 227, 314, 411
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 3 cut(s) 227, 314, 411
MwoI GCNNNNNNNGC 3 cut(s) 19, 106, 392
NcoI CCATGG 1 cut(s) 354
NdeII GATC 3 cut(s) 222, 270, 490
NlaIII CATG 3 cut(s) 119, 331, 358
NlaIV GGNNCC 2 cut(s) 365, 499
NmuCI GTSAC 2 cut(s) 125, 176
PfeI GAWTC 1 cut(s) 448
PflMI CCANNNNNTGG 1 cut(s) 328
PkrI GCNGC 3 cut(s) 205, 382, 385
Psp6I CCWGG 3 cut(s) 225, 312, 409
PspGI CCWGG 3 cut(s) 225, 312, 409
PspN4I GGNNCC 2 cut(s) 365, 499
PspPI GGNCC 3 cut(s) 413, 498, 530
PsrI GAACNNNNNNTAC 2 cut(s) 222, 254
PstI CTGCAG 1 cut(s) 385
PvuII CAGCTG 2 cut(s) 386, 470
RsaI GTAC 3 cut(s) 58, 231, 557
RsaNI GTAC 3 cut(s) 57, 230, 556
SatI GCNGC 3 cut(s) 204, 381, 384
Sau3AI GATC 3 cut(s) 222, 270, 490
Sau96I GGNCC 3 cut(s) 413, 498, 530
ScrFI CCNGG 3 cut(s) 227, 314, 411
SfaNI GCATC 1 cut(s) 215
SfcI CTRYAG 1 cut(s) 381
SinI GGWCC 2 cut(s) 413, 530
Sse9I AATT 3 cut(s) 275, 348, 375
SsiI CCGC 1 cut(s) 338
SspI AATATT 1 cut(s) 64
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 3 cut(s) 225, 312, 409
StyI CCWWGG 1 cut(s) 354
TaiI ACGT 2 cut(s) 261, 477
TaqI TCGA 1 cut(s) 548
TasI AATT 3 cut(s) 275, 348, 375
TatI WGTACW 1 cut(s) 56
TfiI GAWTC 1 cut(s) 448
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 2 cut(s) 125, 176
TseI GCWGC 3 cut(s) 203, 380, 383
Tsp45I GTSAC 2 cut(s) 125, 176
TspDTI ATGAA 2 cut(s) 104, 230
TspGWI ACGGA 1 cut(s) 144
TspRI CASTG 1 cut(s) 403
Van91I CCANNNNNTGG 1 cut(s) 328
VpaK11BI GGWCC 2 cut(s) 413, 530
XapI RAATTY 1 cut(s) 275
XbaI TCTAGA 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 2 cut(s) 86, 329
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.