RchiOBHm_Chr2g0103881

Methylketone synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000171
Physical Location & Seq
Forward (+)
15229120 .. 15229392
273 bp
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UTR
Exon/CDS
Intron
PRQ47822

Sequence Viewer

Length: 273 bp
ATGGCAGCATCCGGAATAAACCCGATGCAGGTGCAAGAAGTCCATTCGTTCTCTGATTATGCTGAGCCGTTGATCAAATTCATGGCTTCTCTACCACCACTACATAGGGTTATCCTAGTTGGCCACAGCATGGGTGGTGCCATCATATCTATTGCCATGGAGATGTTCCCTCAGAGGATTTCAGCTGCTGTATTCGCCACCGCTGCCATGCCTGGGCCTGCTCTACATTACTCCACTATAGTTGCAACGGTAACGAGTTCTATCCAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

90

Amino Acids

9.48

Weight (kDa)

6.37

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 12 - 73 1.5e-07 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 17 - 73 1.6e-08 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 17 - 74 9.4e-06 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 19
Acc36I ACCTGC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 137
AccB7I CCANNNNNTGG 1 cut(s) 130
AccIII TCCGGA 1 cut(s) 11
AciI CCGC 1 cut(s) 201
AcoI YGGCCR 1 cut(s) 121
AcsI RAATTY 1 cut(s) 77
AfiI CCNNNNNNNGG 3 cut(s) 28, 130, 213
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 11
AoxI GGCC 2 cut(s) 121, 215
ApeKI GCWGC 3 cut(s) 5, 185, 203
ApoI RAATTY 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 215
BalI TGGCCA 1 cut(s) 123
BanI GGYRCC 1 cut(s) 137
BbvI GCAGC 3 cut(s) 17, 172, 190
BccI CCATC 1 cut(s) 149
BceAI ACGGC 1 cut(s) 52
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BciT130I CCWGG 1 cut(s) 213
BclI TGATCA 1 cut(s) 72
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 19
BisI GCNGC 3 cut(s) 6, 186, 204
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 3 cut(s) 7, 187, 205
Bme1390I CCNGG 1 cut(s) 213
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 213
BmsI GCATC 2 cut(s) 15, 17
Bpu1102I GCTNAGC 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 156, 212
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 130, 213
BseAI TCCGGA 1 cut(s) 11
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 156, 212
BseGI GGATG 1 cut(s) 8
BseLI CCNNNNNNNGG 3 cut(s) 28, 130, 213
BseMII CTCAG 2 cut(s) 54, 185
BseXI GCAGC 3 cut(s) 17, 172, 190
BshFI GGCC 2 cut(s) 123, 217
BshNI GGYRCC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 3 cut(s) 28, 130, 213
BsnI GGCC 2 cut(s) 123, 217
Bsp13I TCCGGA 1 cut(s) 11
Bsp143I GATC 1 cut(s) 72
Bsp1720I GCTNAGC 1 cut(s) 63
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 1 cut(s) 201
BspANI GGCC 2 cut(s) 123, 217
BspCNI CTCAG 2 cut(s) 55, 184
BspEI TCCGGA 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 156, 212
BssMI GATC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 250
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 63, 171
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 8
BstKTI GATC 1 cut(s) 75
BstMBI GATC 1 cut(s) 72
BstMWI GCNNNNNNNGC 2 cut(s) 194, 203
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 3 cut(s) 17, 172, 190
BsuRI GGCC 2 cut(s) 123, 217
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 8
BveI ACCTGC 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 219
CaiI CAGNNNCTG 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 215
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 5 cut(s) 82, 130, 157, 208, 270
CviJI RGCY 5 cut(s) 67, 86, 123, 185, 217
CviKI_1 RGCY 5 cut(s) 67, 86, 123, 185, 217
DdeI CTNAG 2 cut(s) 63, 171
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
EaeI YGGCCR 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 5 cut(s) 85, 133, 160, 211, 273
FaiI YATR 9 cut(s) 60, 83, 105, 131, 146, 158, 209, 239, 271
FatI CATG 5 cut(s) 81, 129, 156, 207, 269
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 6, 186, 204
Fsp4HI GCNGC 3 cut(s) 6, 186, 204
FspBI CTAG 1 cut(s) 116
GluI GCNGC 3 cut(s) 6, 186, 204
HaeIII GGCC 2 cut(s) 123, 217
HapII CCGG 1 cut(s) 12
Hin1II CATG 5 cut(s) 85, 133, 160, 211, 273
HpaII CCGG 1 cut(s) 12
Hpy188I TCNGA 2 cut(s) 55, 174
Hpy188III TCNNGA 1 cut(s) 12
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4V TGCA 3 cut(s) 28, 34, 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 203
HpyF3I CTNAG 2 cut(s) 63, 171
Hsp92II CATG 5 cut(s) 85, 133, 160, 211, 273
Kpn2I TCCGGA 1 cut(s) 11
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 1 cut(s) 72
LpnPI CCDG 5 cut(s) 14, 25, 198, 225, 231
Lsp1109I GCAGC 3 cut(s) 17, 172, 190
LweI GCATC 2 cut(s) 15, 17
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 250
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MlsI TGGCCA 1 cut(s) 123
MluCI AATT 1 cut(s) 77
MluNI TGGCCA 1 cut(s) 123
MnlI CCTC 2 cut(s) 168, 180
Mox20I TGGCCA 1 cut(s) 123
MroI TCCGGA 1 cut(s) 11
MscI TGGCCA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 161
Msp20I TGGCCA 1 cut(s) 123
MspA1I CMGCKG 2 cut(s) 185, 203
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 194, 203
NcoI CCATGG 1 cut(s) 156
NdeII GATC 1 cut(s) 72
NlaIII CATG 5 cut(s) 85, 133, 160, 211, 273
NlaIV GGNNCC 1 cut(s) 139
PaqCI CACCTGC 1 cut(s) 19
PflMI CCANNNNNTGG 1 cut(s) 130
PkrI GCNGC 3 cut(s) 7, 187, 205
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 1 cut(s) 215
PstNI CAGNNNCTG 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 161
SatI GCNGC 3 cut(s) 6, 186, 204
Sau3AI GATC 1 cut(s) 72
Sau96I GGNCC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 213
SetI ASST 2 cut(s) 33, 187
SfaNI GCATC 2 cut(s) 15, 17
SfcI CTRYAG 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 1 cut(s) 77
SsiI CCGC 1 cut(s) 201
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 211
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 250
TasI AATT 1 cut(s) 77
TseI GCWGC 3 cut(s) 5, 185, 203
TspDTI ATGAA 1 cut(s) 70
Van91I CCANNNNNTGG 1 cut(s) 130
XapI RAATTY 1 cut(s) 77
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.