pycom02g12830

Salicylic acid-binding protein 2-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
9428672 .. 9430101
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g12830.1

Sequence Viewer

Length: 513 bp
ATGATACAGAAATTGGAATTGAAGAACATGACAGAGAAGCTCCTTTTATTTTTCCTTTCATTTATTTGCTTGGCAAAAGCGAGTACCTTAACCCCATCCCCGCCCTCCAACATTCACAACAAAACTCAAAGTCCAAAACATTTTGTGTTGATACATGGAGCCTGTCATGGGGCATGGAGTTGGTATAAGGTGGCGACTCTTCTGAGGAACTCTGGTCACAATGTAACAGCTCTAGACTTGGGAGCATCCGGGATCAACCCGATTCAGGTACAACAACTCCCTTCGTTATCGGAATTCGTCGAGCCTTTGACAAAGGTCATGGTGTCTCTACCACCAAATGAAAAGGTTATCCTCGTGGGTCACAGCTTGGGTGGAGCCGTAATATCTATTTTCATGGAGAGATTTCCTGAGAAAGTTGCTACTGCGATATTTGTCACAGCTGTCATGTATGGTCCTACTCTCAATTTCTCAACTGCATCTGCAGAGGGCTGGTTTGGTATTGCTGTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

171

Amino Acids

18.47

Weight (kDa)

8.98

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 47 - 150 2.3e-16 alpha/beta hydrolase fold
Hydrolase_4 PF12146 47 - 150 9.9e-11 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 48 - 153 2.6e-12 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 101
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 1 cut(s) 293
AfaI GTAC 2 cut(s) 85, 270
AfiI CCNNNNNNNGG 2 cut(s) 168, 265
AgsI TTSAA 1 cut(s) 22
AluBI AGCT 4 cut(s) 40, 230, 366, 440
AluI AGCT 4 cut(s) 40, 230, 366, 440
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 1 cut(s) 260
ApoI RAATTY 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 452
AsuC2I CCSGG 1 cut(s) 250
AvaII GGWCC 1 cut(s) 452
BauI CACGAG 1 cut(s) 353
BccI CCATC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 362
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 480
Bme1390I CCNGG 1 cut(s) 250
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 2 cut(s) 160, 376
BmrFI CCNGG 1 cut(s) 250
BmsI GCATC 2 cut(s) 254, 485
BoxI GACNNNNGTC 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 265
BseGI GGATG 2 cut(s) 95, 245
BseLI CCNNNNNNNGG 2 cut(s) 168, 265
BseMII CTCAG 2 cut(s) 194, 399
BsiSI CCGG 1 cut(s) 249
BslI CCNNNNNNNGG 2 cut(s) 168, 265
BsmAI GTCTC 1 cut(s) 330
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 1 cut(s) 101
BspCNI CTCAG 2 cut(s) 195, 400
BspLI GGNNCC 2 cut(s) 160, 376
BspMAI CTGCAG 1 cut(s) 484
BspPI GGATC 1 cut(s) 260
BssMI GATC 1 cut(s) 252
BssSI CACGAG 1 cut(s) 353
Bst2BI CACGAG 1 cut(s) 353
Bst6I CTCTTC 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 203, 408
BstF5I GGATG 2 cut(s) 95, 245
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 1 cut(s) 252
BstPAI GACNNNNGTC 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 248
BstSFI CTRYAG 1 cut(s) 480
BtsCI GGATG 2 cut(s) 95, 245
Cfr13I GGNCC 1 cut(s) 452
Csp6I GTAC 2 cut(s) 84, 269
CviAII CATG 7 cut(s) 28, 155, 167, 174, 319, 394, 445
CviJI RGCY 8 cut(s) 40, 161, 230, 304, 366, 377, 440, 489
CviKI_1 RGCY 8 cut(s) 40, 161, 230, 304, 366, 377, 440, 489
CviQI GTAC 2 cut(s) 84, 269
DdeI CTNAG 2 cut(s) 203, 408
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 452
EcoRI GAATTC 1 cut(s) 293
FaeI CATG 7 cut(s) 31, 158, 170, 177, 322, 397, 448
FaiI YATR 9 cut(s) 29, 156, 168, 175, 186, 320, 395, 446, 450
FatI CATG 7 cut(s) 27, 154, 166, 173, 318, 393, 444
FauI CCCGC 1 cut(s) 108
FokI GGATG 2 cut(s) 82, 232
FspBI CTAG 1 cut(s) 233
HapII CCGG 1 cut(s) 249
Hin1II CATG 7 cut(s) 31, 158, 170, 177, 322, 397, 448
HinfI GANTC 2 cut(s) 196, 262
HpaII CCGG 1 cut(s) 249
Hpy188I TCNGA 2 cut(s) 204, 292
Hpy188III TCNNGA 2 cut(s) 233, 407
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 476, 482
HpyF3I CTNAG 2 cut(s) 203, 408
Hsp92II CATG 7 cut(s) 31, 158, 170, 177, 322, 397, 448
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 4 cut(s) 45, 158, 242, 374
LpnPI CCDG 6 cut(s) 175, 198, 251, 262, 420, 475
LweI GCATC 2 cut(s) 254, 485
MaeI CTAG 1 cut(s) 233
MaeIII GTNAC 4 cut(s) 215, 223, 359, 433
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 2 cut(s) 34, 191
MluCI AATT 4 cut(s) 11, 17, 293, 463
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 4 cut(s) 115, 198, 362, 478
MseI TTAA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 250
NciI CCSGG 1 cut(s) 250
NdeII GATC 1 cut(s) 252
NlaIII CATG 7 cut(s) 31, 158, 170, 177, 322, 397, 448
NlaIV GGNNCC 2 cut(s) 160, 376
NmuCI GTSAC 3 cut(s) 215, 359, 433
PfeI GAWTC 1 cut(s) 262
PfoI TCCNGGA 1 cut(s) 248
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PshAI GACNNNNGTC 1 cut(s) 314
PspN4I GGNNCC 2 cut(s) 160, 376
PspPI GGNCC 1 cut(s) 452
PstI CTGCAG 1 cut(s) 484
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 2 cut(s) 85, 270
RsaNI GTAC 2 cut(s) 84, 269
SaqAI TTAA 1 cut(s) 89
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 1 cut(s) 452
SchI GAGTC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 250
SetI ASST 9 cut(s) 42, 89, 192, 232, 270, 318, 348, 368, 442
SfaNI GCATC 2 cut(s) 254, 485
SfcI CTRYAG 1 cut(s) 480
SinI GGWCC 1 cut(s) 452
Sse9I AATT 4 cut(s) 11, 17, 293, 463
SsiI CCGC 1 cut(s) 101
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 248
TaqI TCGA 1 cut(s) 300
TasI AATT 4 cut(s) 11, 17, 293, 463
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TseFI GTSAC 3 cut(s) 215, 359, 433
Tsp45I GTSAC 3 cut(s) 215, 359, 433
TspDTI ATGAA 3 cut(s) 48, 354, 382
VpaK11BI GGWCC 1 cut(s) 452
XapI RAATTY 1 cut(s) 293
XbaI TCTAGA 1 cut(s) 232
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.