Rw2G013060

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000171
Physical Location & Seq
Forward (+)
13632096 .. 13632957
862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G013060.1

Sequence Viewer

Length: 567 bp
ATGGAGTCTCTCCCGCCAAAGGAGAGGGTTGTTCTGGTTGGCCACAGCTTGAGTGGAGTAGCCTTATCTATTGCCATGGAGAGGTTCACTCAGAAAATTTCTGTTGCGGTTTTTGCCACCGCTGCCATGCCTGGTCCTTATATCAGTTTCTTGACTATACTTCAAGAGGTTGGCAGTCATTTGGATTTTATGGACTCTCAATATAGATTTGATGATGGCGACACCAAACCTACAACCTCGGCACTCTTGGGGCCGAAGGTGCTAGCCTTATCGTTCTACCAGCTCTCGCCACCAGAGGATTTAACACTAGCGGTCACACTGGTGAGATTTGCCCCTCTTATTACAGAAGAACTGAAATTCACAAAGCATAGATATGGATCGGTTCGTAAAGTATACATTTTATGCGACCAAGACGATGCAATAAAGGTGGATCTTGCAATGTTGATGATCAACAAAAATCCTCCGGATGAAGTCAAAGTGATAAATGGTTCTGATCACATGATCATGTTCTCCAGACCACTCGAGCTTTTCTCCAACATCCTACAAATTGCTGAGAAATACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

188

Amino Acids

20.97

Weight (kDa)

5.55

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_6 PF12697 8 - 177 3e-10 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 393
AccIII TCCGGA 1 cut(s) 463
AciI CCGC 4 cut(s) 14, 107, 120, 311
AclWI GGATC 2 cut(s) 385, 438
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 2 cut(s) 96, 356
AfiI CCNNNNNNNGG 2 cut(s) 19, 81
AgsI TTSAA 1 cut(s) 164
AjnI CCWGG 1 cut(s) 130
AleI CACNNNNGTG 1 cut(s) 320
AluBI AGCT 3 cut(s) 48, 283, 526
AluI AGCT 3 cut(s) 48, 283, 526
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 2 cut(s) 385, 438
Ama87I CYCGRG 1 cut(s) 521
Aor13HI TCCGGA 1 cut(s) 463
AoxI GGCC 2 cut(s) 40, 251
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 2 cut(s) 96, 356
AspS9I GGNCC 2 cut(s) 134, 251
AsuHPI GGTGA 1 cut(s) 334
AsuNHI GCTAGC 1 cut(s) 262
AvaI CYCGRG 1 cut(s) 521
AvaII GGWCC 1 cut(s) 134
BalI TGGCCA 1 cut(s) 42
BbvI GCAGC 1 cut(s) 109
BccI CCATC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 132
BclI TGATCA 3 cut(s) 447, 493, 501
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 2 cut(s) 263, 308
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 521
BmgT120I GGNCC 2 cut(s) 134, 251
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 406
BmtI GCTAGC 1 cut(s) 266
BplI GAGNNNNNCTC 5 cut(s) 73, 105, 515, 547, 545
BpmI CTGGAG 1 cut(s) 496
BpuEI CTTGAG 1 cut(s) 70
BsaBI GATNNNNATC 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 75, 237
BsaWI WCCGGW 1 cut(s) 463
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 81
Bse1I ACTGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 444
Bse8I GATNNNNATC 1 cut(s) 376
BseAI TCCGGA 1 cut(s) 463
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 75, 237
BseGI GGATG 2 cut(s) 472, 537
BseJI GATNNNNATC 1 cut(s) 376
BseLI CCNNNNNNNGG 2 cut(s) 19, 81
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 2 cut(s) 104, 543
BseNI ACTGG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 109
BshFI GGCC 2 cut(s) 42, 253
BsiHKCI CYCGRG 1 cut(s) 521
BsiSI CCGG 1 cut(s) 464
BslI CCNNNNNNNGG 2 cut(s) 19, 81
BsmAI GTCTC 1 cut(s) 12
BsnI GGCC 2 cut(s) 42, 253
BsoBI CYCGRG 1 cut(s) 521
Bsp13I TCCGGA 1 cut(s) 463
Bsp143I GATC 5 cut(s) 377, 430, 447, 493, 501
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 4 cut(s) 14, 107, 120, 311
BspANI GGCC 2 cut(s) 42, 253
BspCNI CTCAG 2 cut(s) 103, 544
BspEI TCCGGA 1 cut(s) 463
BspLI GGNNCC 1 cut(s) 252
BspOI GCTAGC 1 cut(s) 266
BspPI GGATC 2 cut(s) 385, 438
BsrDI GCAATG 1 cut(s) 444
BsrI ACTGG 1 cut(s) 324
BssECI CCNNGG 2 cut(s) 75, 237
BssMI GATC 5 cut(s) 377, 430, 447, 493, 501
BssNAI GTATAC 1 cut(s) 394
BssT1I CCWWGG 1 cut(s) 75
Bst1107I GTATAC 1 cut(s) 394
Bst2UI CCWGG 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 2 cut(s) 90, 552
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 2 cut(s) 472, 537
BstKTI GATC 5 cut(s) 380, 433, 450, 496, 504
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 5 cut(s) 377, 430, 447, 493, 501
BstMWI GCNNNNNNNGC 3 cut(s) 113, 122, 259
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BstZ17I GTATAC 1 cut(s) 394
BsuRI GGCC 2 cut(s) 42, 253
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 2 cut(s) 472, 537
BtsIMutI CAGTG 1 cut(s) 317
Cac8I GCNNGC 1 cut(s) 264
Cfr13I GGNCC 2 cut(s) 134, 251
CspCI CAANNNNNGTGG 2 cut(s) 408, 443
CviAII CATG 4 cut(s) 76, 127, 499, 505
CviJI RGCY 7 cut(s) 42, 48, 62, 253, 266, 283, 526
CviKI_1 RGCY 7 cut(s) 42, 48, 62, 253, 266, 283, 526
DdeI CTNAG 2 cut(s) 90, 552
DpnI GATC 5 cut(s) 379, 432, 449, 495, 503
DpnII GATC 5 cut(s) 377, 430, 447, 493, 501
EaeI YGGCCR 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 4 cut(s) 79, 130, 502, 508
FatI CATG 4 cut(s) 75, 126, 498, 504
FauI CCCGC 1 cut(s) 21
FbaI TGATCA 3 cut(s) 447, 493, 501
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 2 cut(s) 479, 524
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 2 cut(s) 263, 308
GluI GCNGC 1 cut(s) 123
GsuI CTGGAG 1 cut(s) 496
HaeIII GGCC 2 cut(s) 42, 253
HapII CCGG 1 cut(s) 464
Hin1II CATG 4 cut(s) 79, 130, 502, 508
HinfI GANTC 2 cut(s) 5, 194
HpaII CCGG 1 cut(s) 464
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 2 cut(s) 87, 394
Hpy188I TCNGA 2 cut(s) 93, 493
Hpy188III TCNNGA 4 cut(s) 151, 164, 464, 513
Hpy8I GTNNAC 2 cut(s) 87, 394
HpyAV CCTTC 1 cut(s) 250
HpyCH4V TGCA 2 cut(s) 419, 437
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 122, 259
HpyF3I CTNAG 2 cut(s) 90, 552
Hsp92II CATG 4 cut(s) 79, 130, 502, 508
Kpn2I TCCGGA 1 cut(s) 463
Ksp22I TGATCA 3 cut(s) 447, 493, 501
Kzo9I GATC 5 cut(s) 377, 430, 447, 493, 501
LpnPI CCDG 8 cut(s) 20, 117, 144, 293, 305, 306, 477, 526
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 1 cut(s) 406
MaeI CTAG 2 cut(s) 263, 308
MaeIII GTNAC 1 cut(s) 313
MalI GATC 5 cut(s) 379, 432, 449, 495, 503
MboI GATC 5 cut(s) 377, 430, 447, 493, 501
MboII GAAGA 1 cut(s) 359
MflI RGATCY 1 cut(s) 430
MlsI TGGCCA 1 cut(s) 42
MluCI AATT 3 cut(s) 96, 356, 546
MluNI TGGCCA 1 cut(s) 42
MlyI GAGTC 2 cut(s) 14, 188
MmeI TCCRAC 1 cut(s) 558
MnlI CCTC 7 cut(s) 18, 75, 160, 247, 289, 345, 471
Mox20I TGGCCA 1 cut(s) 42
MroI TCCGGA 1 cut(s) 463
MscI TGGCCA 1 cut(s) 42
MseI TTAA 1 cut(s) 302
MslI CAYNNNNRTG 3 cut(s) 320, 372, 503
Msp20I TGGCCA 1 cut(s) 42
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 1 cut(s) 464
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 113, 122, 259
NcoI CCATGG 1 cut(s) 75
NdeII GATC 5 cut(s) 377, 430, 447, 493, 501
NheI GCTAGC 1 cut(s) 262
NlaIII CATG 4 cut(s) 79, 130, 502, 508
NlaIV GGNNCC 1 cut(s) 252
NmeAIII GCCGAG 1 cut(s) 218
NmuCI GTSAC 1 cut(s) 313
OliI CACNNNNGTG 1 cut(s) 320
PaeR7I CTCGAG 1 cut(s) 521
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 2 cut(s) 13, 188
PpsI GAGTC 2 cut(s) 13, 188
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 2 cut(s) 134, 251
PspXI VCTCGAGB 1 cut(s) 521
PsuI RGATCY 1 cut(s) 430
RseI CAYNNNNRTG 3 cut(s) 320, 372, 503
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 5 cut(s) 377, 430, 447, 493, 501
Sau96I GGNCC 2 cut(s) 134, 251
SchI GAGTC 2 cut(s) 14, 188
ScrFI CCNGG 1 cut(s) 132
SetI ASST 9 cut(s) 50, 86, 171, 232, 239, 261, 285, 429, 528
SfaNI GCATC 1 cut(s) 406
Sfr274I CTCGAG 1 cut(s) 521
SinI GGWCC 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 521
SmiMI CAYNNNNRTG 3 cut(s) 320, 372, 503
SmlI CTYRAG 2 cut(s) 49, 521
SmoI CTYRAG 2 cut(s) 49, 521
Sse9I AATT 3 cut(s) 96, 356, 546
SsiI CCGC 4 cut(s) 14, 107, 120, 311
SspMI CTAG 2 cut(s) 263, 308
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 75
TaqI TCGA 1 cut(s) 522
TasI AATT 3 cut(s) 96, 356, 546
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 1 cut(s) 483
TspRI CASTG 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 2 cut(s) 96, 356
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
XhoI CTCGAG 1 cut(s) 521
XmiI GTMKAC 1 cut(s) 393
XspI CTAG 2 cut(s) 263, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.