RchiOBHm_Chr2g0103951

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000171
Physical Location & Seq
Forward (+)
15273496 .. 15278492
4997 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47825

Sequence Viewer

Length: 864 bp
ATGGAGCGGATAAGATCTGTGAAGGAAGTTGTGTATTTTCTTATATTTCTTAACTTGGTAGCAAGTTGCAGTCCTATTAGCGCAGCTTCTTCTTCCCAGATCCCAGCTGGGAAGAAGCACTTTGTGTTAATTCATGGAGCCGGACACGGAGCGTGGTCTTGGTACAAGGTGGCGACTTTACTGAAACACTCGGGTCATAATGTAACGGCTCTGGACTTGGGAGCATCTGGAATCAACCCGATCCAGGTTCAGCAACTCCCTTCGCTCTCCGACTACGTTGAACCGCTGACGAAGCTCATGGTGTCTCTGCCACCAAAGGAGAGGGTTATTCTGGTGTCTCACAGCATGACTGGAGCTACAATAGCAGTTTTCATGGAGAGGTTCCCTGAGAAAATTGCGGCAGCCGTGTATGTCTCTGCCTTTATGTCGGGTCCTACTCTCAATTACTCCACCATTTTTACAGAGATAAACAAACGATTGGATTATATGGATTCTGAATATAGATATGATAACGGGACCAACAATTCTGCAACCTCCTTTCGCTTTGGGCCTAAGGTCTTGGCAGCAAGCTTATACCAGCTATCTCCAGAGGATTTAACACTAGGATTGTCGTTGGTGAGATTTTCTCCTCTATACAACTACGATCTTATAAAACTCACTGAGGAGAAATATGGATCGGTTCCGAGAATATTCATCGCGGCAGATCAAGACCATGCAATAGTTTTAGACGTGCAAAATTTCATGATCAAGAATAATCCACCAAATGAAGTGAAAGTGATCAATGGTGCTGATCACATGGTCATGCTCTCTAGACCCGTGGAGCTCTTCTCCCACCTCCAGAACATTGCTGAGAAATATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

287

Amino Acids

31.89

Weight (kDa)

7.13

Isoelectric Point (pI)

33.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 38 - 157 4.2e-10 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 40 - 271 3.6e-16 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 41 - 275 1.7e-18 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 650
AccBSI CCGCTC 1 cut(s) 7
AccII CGCG 1 cut(s) 698
AciI CCGC 4 cut(s) 7, 284, 398, 698
AclWI GGATC 3 cut(s) 94, 235, 682
AcsI RAATTY 1 cut(s) 736
AdeI CACNNNGTG 1 cut(s) 124
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 1 cut(s) 281
AjiI CACGTC 1 cut(s) 730
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 7 cut(s) 86, 107, 295, 356, 570, 580, 823
AluI AGCT 7 cut(s) 86, 107, 295, 356, 570, 580, 823
Alw21I GWGCWC 1 cut(s) 825
Alw26I GTCTC 3 cut(s) 309, 342, 418
AlwI GGATC 3 cut(s) 94, 235, 682
Ama87I CYCGRG 1 cut(s) 190
AoxI GGCC 1 cut(s) 548
ApeKI GCWGC 3 cut(s) 83, 401, 563
ApoI RAATTY 1 cut(s) 736
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 3 cut(s) 431, 516, 548
AsuHPI GGTGA 1 cut(s) 628
AvaI CYCGRG 1 cut(s) 190
AvaII GGWCC 2 cut(s) 431, 516
AxyI CCTNAGG 1 cut(s) 552
BanII GRGCYC 1 cut(s) 825
Bbv12I GWGCWC 1 cut(s) 825
BbvI GCAGC 3 cut(s) 95, 413, 575
BceAI ACGGC 2 cut(s) 222, 389
BciT130I CCWGG 1 cut(s) 245
BclI TGATCA 3 cut(s) 744, 777, 790
BcoDI GTCTC 3 cut(s) 309, 342, 418
BfaI CTAG 2 cut(s) 602, 810
BglII AGATCT 1 cut(s) 14
BisI GCNGC 5 cut(s) 84, 399, 402, 564, 699
BlsI GCNGC 5 cut(s) 85, 400, 403, 565, 700
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 2 cut(s) 431, 516
BmeT110I CYCGRG 1 cut(s) 190
BmgBI CACGTC 1 cut(s) 730
BmgT120I GGNCC 3 cut(s) 431, 516, 548
BmiI GGNNCC 5 cut(s) 139, 383, 432, 517, 681
BmrFI CCNGG 1 cut(s) 245
BmsI GCATC 1 cut(s) 233
BplI GAGNNNNNCTC 4 cut(s) 610, 642, 812, 844
BpmI CTGGAG 3 cut(s) 372, 570, 821
BsaJI CCNNGG 1 cut(s) 816
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 355
Bse21I CCTNAGG 1 cut(s) 552
Bse3DI GCAATG 1 cut(s) 843
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 816
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 843
BseMII CTCAG 3 cut(s) 378, 651, 840
BseNI ACTGG 1 cut(s) 355
BseRI GAGGAG 2 cut(s) 618, 677
BseXI GCAGC 3 cut(s) 95, 413, 575
BseYI CCCAGC 2 cut(s) 103, 107
Bsh1236I CGCG 1 cut(s) 698
BshFI GGCC 1 cut(s) 550
BsiHKAI GWGCWC 1 cut(s) 825
BsiHKCI CYCGRG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 529
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 3 cut(s) 309, 342, 418
BsmFI GGGAC 1 cut(s) 529
BsnI GGCC 1 cut(s) 550
BsoBI CYCGRG 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 825
Bsp143I GATC 9 cut(s) 14, 99, 240, 643, 674, 703, 744, 777, 790
BspACI CCGC 4 cut(s) 7, 284, 398, 698
BspANI GGCC 1 cut(s) 550
BspCNI CTCAG 3 cut(s) 379, 652, 841
BspFNI CGCG 1 cut(s) 698
BspHI TCATGA 1 cut(s) 741
BspLI GGNNCC 5 cut(s) 139, 383, 432, 517, 681
BspPI GGATC 3 cut(s) 94, 235, 682
BspQI GCTCTTC 1 cut(s) 830
BsrBI CCGCTC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 843
BsrI ACTGG 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 816
BssMI GATC 9 cut(s) 14, 99, 240, 643, 674, 703, 744, 777, 790
Bst2UI CCWGG 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 830
BstC8I GCNNGC 1 cut(s) 568
BstDEI CTNAG 4 cut(s) 387, 552, 660, 849
BstDSI CCRYGG 1 cut(s) 816
BstFNI CGCG 1 cut(s) 698
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 9 cut(s) 17, 102, 243, 646, 677, 706, 747, 780, 793
BstMAI GTCTC 3 cut(s) 309, 342, 418
BstMBI GATC 9 cut(s) 14, 99, 240, 643, 674, 703, 744, 777, 790
BstMWI GCNNNNNNNGC 2 cut(s) 292, 362
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
BstUI CGCG 1 cut(s) 698
BstV1I GCAGC 3 cut(s) 95, 413, 575
BstX2I RGATCY 2 cut(s) 14, 99
BstYI RGATCY 2 cut(s) 14, 99
Bsu36I CCTNAGG 1 cut(s) 552
BsuRI GGCC 1 cut(s) 550
BtgI CCRYGG 1 cut(s) 816
BtgZI GCGATG 1 cut(s) 679
BtrI CACGTC 1 cut(s) 730
BtsIMutI CAGTG 1 cut(s) 657
Cac8I GCNNGC 1 cut(s) 568
CciI TCATGA 1 cut(s) 741
CfoI GCGC 1 cut(s) 83
Cfr13I GGNCC 3 cut(s) 431, 516, 548
Csp6I GTAC 1 cut(s) 163
CviAII CATG 8 cut(s) 134, 298, 346, 373, 713, 742, 796, 802
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 4 cut(s) 387, 552, 660, 849
DpnI GATC 9 cut(s) 16, 101, 242, 645, 676, 705, 746, 779, 792
DpnII GATC 9 cut(s) 14, 99, 240, 643, 674, 703, 744, 777, 790
DraIII CACNNNGTG 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 830
EarI CTCTTC 1 cut(s) 830
Ecl136II GAGCTC 1 cut(s) 823
Eco24I GRGCYC 1 cut(s) 825
Eco47I GGWCC 2 cut(s) 431, 516
Eco53kI GAGCTC 1 cut(s) 823
Eco81I CCTNAGG 1 cut(s) 552
Eco88I CYCGRG 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 823
EcoO109I RGGNCCY 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 825
FaeI CATG 8 cut(s) 137, 301, 349, 376, 716, 745, 799, 805
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FaqI GGGAC 1 cut(s) 529
FatI CATG 8 cut(s) 133, 297, 345, 372, 712, 741, 795, 801
FbaI TGATCA 3 cut(s) 744, 777, 790
Fnu4HI GCNGC 5 cut(s) 84, 399, 402, 564, 699
FriOI GRGCYC 1 cut(s) 825
Fsp4HI GCNGC 5 cut(s) 84, 399, 402, 564, 699
FspBI CTAG 2 cut(s) 602, 810
GlaI GCGC 1 cut(s) 82
GluI GCNGC 5 cut(s) 84, 399, 402, 564, 699
GsaI CCCAGC 2 cut(s) 107, 111
GsuI CTGGAG 3 cut(s) 372, 570, 821
HaeIII GGCC 1 cut(s) 550
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 83
Hin1II CATG 8 cut(s) 137, 301, 349, 376, 716, 745, 799, 805
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 568
HinfI GANTC 2 cut(s) 231, 491
HpaII CCGG 1 cut(s) 141
HphI GGTGA 1 cut(s) 628
Hpy188I TCNGA 3 cut(s) 271, 496, 684
Hpy188III TCNNGA 8 cut(s) 212, 228, 587, 707, 742, 748, 810, 838
HpyAV CCTTC 2 cut(s) 16, 270
HpyCH4IV ACGT 2 cut(s) 276, 729
HpyCH4V TGCA 4 cut(s) 69, 530, 716, 733
HpyF10VI GCNNNNNNNGC 2 cut(s) 292, 362
HpyF3I CTNAG 4 cut(s) 387, 552, 660, 849
HpySE526I ACGT 2 cut(s) 276, 729
Hsp92II CATG 8 cut(s) 137, 301, 349, 376, 716, 745, 799, 805
HspAI GCGC 1 cut(s) 81
Ksp22I TGATCA 3 cut(s) 744, 777, 790
Kzo9I GATC 9 cut(s) 14, 99, 240, 643, 674, 703, 744, 777, 790
LguI GCTCTTC 1 cut(s) 830
LmnI GCTCC 6 cut(s) 4, 137, 149, 221, 353, 820
Lsp1109I GCAGC 3 cut(s) 95, 413, 575
LweI GCATC 1 cut(s) 233
MaeI CTAG 2 cut(s) 602, 810
MaeII ACGT 2 cut(s) 276, 729
MaeIII GTNAC 1 cut(s) 202
MalI GATC 9 cut(s) 16, 101, 242, 645, 676, 705, 746, 779, 792
MbiI CCGCTC 1 cut(s) 7
MboI GATC 9 cut(s) 14, 99, 240, 643, 674, 703, 744, 777, 790
MboII GAAGA 4 cut(s) 81, 84, 124, 817
MflI RGATCY 2 cut(s) 14, 99
MhlI GDGCHC 1 cut(s) 825
MluCI AATT 5 cut(s) 129, 393, 442, 523, 736
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 7 cut(s) 315, 372, 544, 583, 639, 655, 845
MseI TTAA 4 cut(s) 51, 128, 596, 862
MslI CAYNNNNRTG 1 cut(s) 800
MspA1I CMGCKG 2 cut(s) 107, 286
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 245
MvaI CCWGG 1 cut(s) 245
MvnI CGCG 1 cut(s) 698
MwoI GCNNNNNNNGC 2 cut(s) 292, 362
NdeII GATC 9 cut(s) 14, 99, 240, 643, 674, 703, 744, 777, 790
NlaIII CATG 8 cut(s) 137, 301, 349, 376, 716, 745, 799, 805
NlaIV GGNNCC 5 cut(s) 139, 383, 432, 517, 681
PagI TCATGA 1 cut(s) 741
PciSI GCTCTTC 1 cut(s) 830
PfeI GAWTC 2 cut(s) 231, 491
PkrI GCNGC 5 cut(s) 85, 400, 403, 565, 700
PpuMI RGGWCCY 1 cut(s) 431
PsiI TTATAA 1 cut(s) 650
Psp124BI GAGCTC 1 cut(s) 825
Psp5II RGGWCCY 1 cut(s) 431
Psp6I CCWGG 1 cut(s) 243
PspFI CCCAGC 2 cut(s) 103, 107
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 5 cut(s) 139, 383, 432, 517, 681
PspPI GGNCC 3 cut(s) 431, 516, 548
PspPPI RGGWCCY 1 cut(s) 431
PsuI RGATCY 2 cut(s) 14, 99
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 800
SacI GAGCTC 1 cut(s) 825
SapI GCTCTTC 1 cut(s) 830
SaqAI TTAA 4 cut(s) 51, 128, 596, 862
SatI GCNGC 5 cut(s) 84, 399, 402, 564, 699
Sau3AI GATC 9 cut(s) 14, 99, 240, 643, 674, 703, 744, 777, 790
Sau96I GGNCC 3 cut(s) 431, 516, 548
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 1 cut(s) 825
SfaNI GCATC 1 cut(s) 233
SinI GGWCC 2 cut(s) 431, 516
SmiMI CAYNNNNRTG 1 cut(s) 800
Sse9I AATT 5 cut(s) 129, 393, 442, 523, 736
SsiI CCGC 4 cut(s) 7, 284, 398, 698
SspI AATATT 2 cut(s) 690, 857
SspMI CTAG 2 cut(s) 602, 810
SstI GAGCTC 1 cut(s) 825
StyD4I CCNGG 1 cut(s) 243
TaiI ACGT 2 cut(s) 279, 732
TasI AATT 5 cut(s) 129, 393, 442, 523, 736
TauI GCSGC 2 cut(s) 401, 701
TfiI GAWTC 2 cut(s) 231, 491
Tru1I TTAA 4 cut(s) 51, 128, 596, 862
Tru9I TTAA 4 cut(s) 51, 128, 596, 862
TscAI CASTG 1 cut(s) 664
TseI GCWGC 3 cut(s) 83, 401, 563
TspDTI ATGAA 5 cut(s) 122, 361, 682, 730, 780
TspGWI ACGGA 1 cut(s) 162
TspRI CASTG 1 cut(s) 664
VpaK11BI GGWCC 2 cut(s) 431, 516
XapI RAATTY 1 cut(s) 736
XbaI TCTAGA 1 cut(s) 809
XcmI CCANNNNNNNNNTGG 1 cut(s) 104
XspI CTAG 2 cut(s) 602, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.