MD02G1162300.v1.1

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000171
Physical Location & Seq
Forward (+)
13712480 .. 13714142
1663 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1162300.v1.1.491

Sequence Viewer

Length: 714 bp
ATGATACAGAAGCGTTTTGTTGTTTTTCTTTTATTTATTTGCTTAGCAAAACATTGTACCTCATCCCCATCCCCATCCCAACCCCAACCCAACTTTCACAACGAACCCCAAATTCCAACTGGGATTAAACATTTTGTGTTGATACATGGAGCCTGTCATGGAGCATGGAGTTGGTATAAGGTGGCGACTCTCCTGAAGGACTCGGGTCACAATGTCACAGCTCTAGACTTGGGAGTATCAGGGATCAAACCGATCCAGGTACAGCAACTCCCTTCGTTATCGGAATACGTCAAACCTTTGACGGAGTTCATGGTGTCACTAACACCAGAGGAGAAGGTAATCCTTGTAGCTCACAGCTTGGGTGGAGCCATAATATCTATTTTCAAGGAGAGTGAAATGAGACTATATGTGTGTGTTACCAAAGGATTGGACTTTATTGTCAGATATGATAACGGGACCAACAACCCCGCAACCTCCGCTATGTTTAGGCCTAAGTTCTTGGCAACCAACTTGTACCAGCTCTCACCACCACAAGATTTAACTCTAGGATTATCGTTGGTGAGATTTACTCCTCTATACGATTATGATGTAATAAAGCTCACGACAGAGAAATACGAATCAGTTCCTAGAGTATTCATCGTGTCCGACCAAGACCATACAATAGTGTCGGATGTGCAAAATTACATGATTAAAACAATCCGCCAAAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

238

Amino Acids

26.7

Weight (kDa)

8.8

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 44 - 126 1.7e-09 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 45 - 230 2.3e-12 Alpha/beta hydrolase family
Hydrolase_4 PF12146 45 - 126 3.7e-07 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 437
AciI CCGC 3 cut(s) 468, 477, 700
AclWI GGATC 2 cut(s) 247, 251
AcsI RAATTY 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 3 cut(s) 58, 261, 515
AgsI TTSAA 1 cut(s) 385
AjnI CCWGG 1 cut(s) 255
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
AluBI AGCT 5 cut(s) 221, 350, 357, 520, 598
AluI AGCT 5 cut(s) 221, 350, 357, 520, 598
Alw26I GTCTC 1 cut(s) 394
AlwI GGATC 2 cut(s) 247, 251
Ama87I CYCGRG 1 cut(s) 202
AoxI GGCC 1 cut(s) 488
ApoI RAATTY 1 cut(s) 111
Asp700I GAANNNNTTC 1 cut(s) 621
AspS9I GGNCC 1 cut(s) 456
AsuHPI GGTGA 2 cut(s) 516, 571
AvaI CYCGRG 1 cut(s) 202
AvaII GGWCC 1 cut(s) 456
BccI CCATC 2 cut(s) 76, 82
BciT130I CCWGG 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 394
BfaI CTAG 3 cut(s) 224, 545, 627
BlpI GCTNAGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 257
Bme18I GGWCC 1 cut(s) 456
BmeT110I CYCGRG 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 456
BmiI GGNNCC 3 cut(s) 151, 367, 457
BmrFI CCNGG 1 cut(s) 257
BmrI ACTGGG 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 129
BoxI GACNNNNGTC 1 cut(s) 204
BplI GAGNNNNNCTC 2 cut(s) 553, 585
Bpu1102I GCTNAGC 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bse1I ACTGG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 257
BseGI GGATG 4 cut(s) 62, 68, 74, 676
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 2 cut(s) 344, 561
BshFI GGCC 1 cut(s) 490
BsiHKCI CYCGRG 1 cut(s) 202
BslFI GGGAC 1 cut(s) 469
BsmAI GTCTC 1 cut(s) 394
BsmFI GGGAC 1 cut(s) 469
BsnI GGCC 1 cut(s) 490
BsoBI CYCGRG 1 cut(s) 202
Bsp143I GATC 2 cut(s) 243, 252
Bsp1720I GCTNAGC 1 cut(s) 43
BspACI CCGC 3 cut(s) 468, 477, 700
BspANI GGCC 1 cut(s) 490
BspLI GGNNCC 3 cut(s) 151, 367, 457
BspPI GGATC 2 cut(s) 247, 251
BsrI ACTGG 1 cut(s) 124
BssMI GATC 2 cut(s) 243, 252
Bst2UI CCWGG 1 cut(s) 257
BstDEI CTNAG 2 cut(s) 43, 492
BstF5I GGATG 4 cut(s) 62, 68, 74, 676
BstKTI GATC 2 cut(s) 246, 255
BstMAI GTCTC 1 cut(s) 394
BstMBI GATC 2 cut(s) 243, 252
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNI CCWGG 1 cut(s) 257
BstPAI GACNNNNGTC 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 255
BstXI CCANNNNNNTGG 1 cut(s) 427
BsuRI GGCC 1 cut(s) 490
BtsCI GGATG 4 cut(s) 62, 68, 74, 676
Cfr13I GGNCC 1 cut(s) 456
Csp6I GTAC 3 cut(s) 57, 260, 514
CviAII CATG 5 cut(s) 146, 158, 165, 310, 685
CviJI RGCY 8 cut(s) 152, 221, 350, 357, 368, 490, 520, 598
CviKI_1 RGCY 8 cut(s) 152, 221, 350, 357, 368, 490, 520, 598
CviQI GTAC 3 cut(s) 57, 260, 514
DdeI CTNAG 2 cut(s) 43, 492
DpnI GATC 2 cut(s) 245, 254
DpnII GATC 2 cut(s) 243, 252
DrdI GACNNNNNNGTC 1 cut(s) 437
DseDI GACNNNNNNGTC 1 cut(s) 437
EciI GGCGGA 1 cut(s) 689
Eco147I AGGCCT 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 456
Eco57I CTGAAG 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 255
FaeI CATG 5 cut(s) 149, 161, 168, 313, 688
FaqI GGGAC 1 cut(s) 469
FatI CATG 5 cut(s) 145, 157, 164, 309, 684
FauI CCCGC 1 cut(s) 475
FokI GGATG 4 cut(s) 49, 55, 61, 683
FspBI CTAG 3 cut(s) 224, 545, 627
HaeIII GGCC 1 cut(s) 490
Hin1II CATG 5 cut(s) 149, 161, 168, 313, 688
HinfI GANTC 3 cut(s) 187, 200, 617
HphI GGTGA 2 cut(s) 516, 571
Hpy188I TCNGA 4 cut(s) 283, 443, 646, 670
Hpy188III TCNNGA 3 cut(s) 193, 224, 601
HpyAV CCTTC 3 cut(s) 190, 282, 328
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 1 cut(s) 676
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 2 cut(s) 43, 492
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 5 cut(s) 149, 161, 168, 313, 688
Kzo9I GATC 2 cut(s) 243, 252
LmnI GCTCC 3 cut(s) 149, 161, 365
LpnPI CCDG 8 cut(s) 105, 166, 206, 225, 242, 269, 339, 530
MaeI CTAG 3 cut(s) 224, 545, 627
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 4 cut(s) 206, 214, 315, 415
MalI GATC 2 cut(s) 245, 254
MboI GATC 2 cut(s) 243, 252
MluCI AATT 2 cut(s) 111, 679
MlyI GAGTC 2 cut(s) 181, 194
MmeI TCCRAC 3 cut(s) 140, 648, 669
MnlI CCTC 4 cut(s) 70, 322, 484, 582
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 3 cut(s) 126, 539, 690
MspR9I CCNGG 1 cut(s) 257
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 476
NdeII GATC 2 cut(s) 243, 252
NlaIII CATG 5 cut(s) 149, 161, 168, 313, 688
NlaIV GGNNCC 3 cut(s) 151, 367, 457
NmuCI GTSAC 3 cut(s) 206, 214, 315
PceI AGGCCT 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 1 cut(s) 617
PleI GAGTC 2 cut(s) 181, 194
PpsI GAGTC 2 cut(s) 181, 194
PshAI GACNNNNGTC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 3 cut(s) 151, 367, 457
PspPI GGNCC 1 cut(s) 456
RsaI GTAC 3 cut(s) 58, 261, 515
RsaNI GTAC 3 cut(s) 57, 260, 514
SaqAI TTAA 3 cut(s) 126, 539, 690
Sau3AI GATC 2 cut(s) 243, 252
Sau96I GGNCC 1 cut(s) 456
SchI GAGTC 2 cut(s) 181, 194
ScrFI CCNGG 1 cut(s) 257
SinI GGWCC 1 cut(s) 456
Sse9I AATT 2 cut(s) 111, 679
SseBI AGGCCT 1 cut(s) 490
SsiI CCGC 3 cut(s) 468, 477, 700
SspMI CTAG 3 cut(s) 224, 545, 627
StuI AGGCCT 1 cut(s) 490
StyD4I CCNGG 1 cut(s) 255
TaiI ACGT 1 cut(s) 291
TasI AATT 2 cut(s) 111, 679
TfiI GAWTC 1 cut(s) 617
Tru1I TTAA 3 cut(s) 126, 539, 690
Tru9I TTAA 3 cut(s) 126, 539, 690
TseFI GTSAC 3 cut(s) 206, 214, 315
Tsp45I GTSAC 3 cut(s) 206, 214, 315
TspDTI ATGAA 2 cut(s) 298, 625
TspGWI ACGGA 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 456
XapI RAATTY 1 cut(s) 111
XbaI TCTAGA 1 cut(s) 223
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 3 cut(s) 224, 545, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.