Rh2DG172000

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000171
Physical Location & Seq
Forward (+)
14977214 .. 14980712
3499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG172000.1

Sequence Viewer

Length: 375 bp
ATGCTTCCGGGGTATCGCTCTGTCCATTCTCCATCGCCTTCTGTTGGTTTGGTGGGTAATCATGGTGGAGGTGTCACCGGCTTTGGCCTTGTGGTCACTGGAATAGAGGCAGTGGTGGTTCACAGTGAGCGGTTACCAAGAGTTGATGGCGGTTACAATCATAGTTTACACACTGGTTTTGGTGATGGTCATTTTTCTTGGGGTCACAATGTTACAACTCTAGACCTTCCGGCATCCGAGATCAACCAAACACAGCAACAACAACTTCATTTGTTTTCCGACTACACTGAGCCATTGTTTGAATTTCTGGGGTCTCTGCAACCAAAAGAGAAGGGTATCCTGGTCGGTCACAGCATGGGTGGCCCTGTCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

124

Amino Acids

13.2

Weight (kDa)

5.92

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 130
AciI CCGC 2 cut(s) 130, 150
AcsI RAATTY 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 302
AjnI CCWGG 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 318
AoxI GGCC 2 cut(s) 85, 361
ApoI RAATTY 1 cut(s) 302
AspS9I GGNCC 1 cut(s) 362
AsuC2I CCSGG 1 cut(s) 9
AsuHPI GGTGA 2 cut(s) 67, 194
BccI CCATC 3 cut(s) 40, 140, 179
BciT130I CCWGG 1 cut(s) 341
BciVI GTATCC 1 cut(s) 347
BcnI CCSGG 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 1 cut(s) 221
BfuI GTATCC 1 cut(s) 347
Bme1390I CCNGG 2 cut(s) 9, 341
BmgT120I GGNCC 1 cut(s) 362
BmrFI CCNGG 2 cut(s) 9, 341
BmsI GCATC 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 2 cut(s) 103, 178
BseBI CCWGG 1 cut(s) 341
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 2 cut(s) 103, 178
BshFI GGCC 2 cut(s) 87, 363
BsiSI CCGG 3 cut(s) 8, 78, 230
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 318
BsnI GGCC 2 cut(s) 87, 363
Bso31I GGTCTC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 2 cut(s) 130, 150
BspANI GGCC 2 cut(s) 87, 363
BspCNI CTCAG 1 cut(s) 280
BspTNI GGTCTC 1 cut(s) 318
BsrBI CCGCTC 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 2 cut(s) 103, 178
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 288
BstEII GGTNACC 1 cut(s) 132
BstF5I GGATG 1 cut(s) 233
BstKTI GATC 1 cut(s) 243
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 1 cut(s) 240
BstMWI GCNNNNNNNGC 1 cut(s) 360
BstNI CCWGG 1 cut(s) 341
BstPI GGTNACC 1 cut(s) 132
BstSCI CCNGG 2 cut(s) 7, 339
BsuI GTATCC 1 cut(s) 347
BsuRI GGCC 2 cut(s) 87, 363
BtgZI GCGATG 1 cut(s) 18
BtsCI GGATG 1 cut(s) 233
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 5 cut(s) 96, 117, 130, 171, 285
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 362
CviAII CATG 2 cut(s) 62, 355
CviJI RGCY 4 cut(s) 81, 87, 292, 363
CviKI_1 RGCY 4 cut(s) 81, 87, 292, 363
DdeI CTNAG 1 cut(s) 288
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 318
Eco91I GGTNACC 1 cut(s) 132
EcoO65I GGTNACC 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 339
FaeI CATG 2 cut(s) 65, 358
FaiI YATR 5 cut(s) 63, 162, 356, 371, 373
FatI CATG 2 cut(s) 61, 354
FokI GGATG 1 cut(s) 220
FspBI CTAG 1 cut(s) 221
HaeIII GGCC 2 cut(s) 87, 363
HapII CCGG 3 cut(s) 8, 78, 230
Hin1II CATG 2 cut(s) 65, 358
HpaII CCGG 3 cut(s) 8, 78, 230
HphI GGTGA 2 cut(s) 67, 194
Hpy166II GTNNAC 2 cut(s) 121, 167
Hpy188I TCNGA 2 cut(s) 238, 280
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 2 cut(s) 121, 167
HpyAV CCTTC 3 cut(s) 48, 236, 325
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 1 cut(s) 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 360
HpyF3I CTNAG 1 cut(s) 288
Hsp92II CATG 2 cut(s) 65, 358
Kzo9I GATC 1 cut(s) 240
LpnPI CCDG 8 cut(s) 21, 84, 91, 159, 243, 293, 326, 353
LweI GCATC 1 cut(s) 242
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 7 cut(s) 73, 94, 132, 152, 203, 211, 347
MalI GATC 1 cut(s) 242
MbiI CCGCTC 1 cut(s) 130
MboI GATC 1 cut(s) 240
MluCI AATT 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 2 cut(s) 62, 100
MspI CCGG 3 cut(s) 8, 78, 230
MspR9I CCNGG 2 cut(s) 9, 341
MvaI CCWGG 1 cut(s) 341
MwoI GCNNNNNNNGC 1 cut(s) 360
NciI CCSGG 1 cut(s) 9
NdeII GATC 1 cut(s) 240
NlaIII CATG 2 cut(s) 65, 358
NmuCI GTSAC 4 cut(s) 73, 94, 203, 347
Psp6I CCWGG 1 cut(s) 339
PspEI GGTNACC 1 cut(s) 132
PspGI CCWGG 1 cut(s) 339
PspPI GGNCC 1 cut(s) 362
Sau3AI GATC 1 cut(s) 240
Sau96I GGNCC 1 cut(s) 362
ScrFI CCNGG 2 cut(s) 9, 341
SetI ASST 2 cut(s) 73, 228
SfaNI GCATC 1 cut(s) 242
Sse9I AATT 1 cut(s) 302
SsiI CCGC 2 cut(s) 130, 150
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 7, 339
TaaI ACNGT 1 cut(s) 125
TaqII GACCGA 1 cut(s) 335
TasI AATT 1 cut(s) 302
TscAI CASTG 5 cut(s) 103, 117, 130, 178, 292
TseFI GTSAC 4 cut(s) 73, 94, 203, 347
Tsp45I GTSAC 4 cut(s) 73, 94, 203, 347
TspDTI ATGAA 1 cut(s) 257
TspRI CASTG 5 cut(s) 103, 117, 130, 178, 292
XapI RAATTY 1 cut(s) 302
XbaI TCTAGA 1 cut(s) 220
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.