FvH4_1g14920

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000171
Physical Location & Seq
Forward (+)
8361579 .. 8361977
399 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14920.t1

Sequence Viewer

Length: 312 bp
ATGGAGTCTCTGCCACCGCAGGATAGGGTTATCCTAGTAGGTCACAGCTTGGGTGGTCTTCCCCTATCTCTTGTCATGGAGAGGTTCCCCAGTAAAATTGCTGCTGCAGTTTTTGCCACCGCTGACATGCCTGCTCCAAATCTCAGTTTGGCCACTATATCTGAAGAGTTTGGTAAAGATACAGATTTTATGGACACTAAATATAGATTTGATGATGGATCCGGCAGACCTGCAACTGCAGTGTTCTTCGGGCCGAAGTTTTTGGCGTCAAAATTATACCAACTATCGCCGCCAGAGGTATCAATCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

104

Amino Acids

11.11

Weight (kDa)

4.93

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 6 - 67 6e-07 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 238
AciI CCGC 3 cut(s) 17, 120, 290
AclWI GGATC 2 cut(s) 213, 226
AcoI YGGCCR 1 cut(s) 150
AcuI CTGAAG 1 cut(s) 183
AcyI GRCGYC 1 cut(s) 266
AluBI AGCT 2 cut(s) 48, 309
AluI AGCT 2 cut(s) 48, 309
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 2 cut(s) 213, 226
AoxI GGCC 2 cut(s) 150, 251
ApeKI GCWGC 2 cut(s) 101, 104
AspS9I GGNCC 1 cut(s) 251
BalI TGGCCA 1 cut(s) 152
BamHI GGATCC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 50
BbvI GCAGC 2 cut(s) 88, 91
BccI CCATC 1 cut(s) 209
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 2 cut(s) 35, 310
BfmI CTRYAG 2 cut(s) 105, 237
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 3 cut(s) 102, 105, 290
BlsI GCNGC 3 cut(s) 103, 106, 291
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 2 cut(s) 86, 220
BmrI ACTGGG 1 cut(s) 84
BmuI ACTGGG 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 157
BseNI ACTGG 1 cut(s) 90
BseXI GCAGC 2 cut(s) 88, 91
BshFI GGCC 2 cut(s) 152, 253
BsiSI CCGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 12
BsnI GGCC 2 cut(s) 152, 253
Bsp143I GATC 1 cut(s) 218
BspACI CCGC 3 cut(s) 17, 120, 290
BspANI GGCC 2 cut(s) 152, 253
BspCNI CTCAG 1 cut(s) 156
BspLI GGNNCC 2 cut(s) 86, 220
BspMAI CTGCAG 2 cut(s) 109, 241
BspMI ACCTGC 1 cut(s) 238
BspPI GGATC 2 cut(s) 213, 226
BsrI ACTGG 1 cut(s) 90
BssMI GATC 1 cut(s) 218
BssNI GRCGYC 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 266
BstAPI GCANNNNNTGC 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 143
BstKTI GATC 1 cut(s) 221
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 1 cut(s) 218
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 130
BstSFI CTRYAG 2 cut(s) 105, 237
BstV1I GCAGC 2 cut(s) 88, 91
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BsuRI GGCC 2 cut(s) 152, 253
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 246
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 251
CseI GACGC 1 cut(s) 255
CviAII CATG 2 cut(s) 76, 127
CviJI RGCY 4 cut(s) 48, 152, 253, 309
CviKI_1 RGCY 4 cut(s) 48, 152, 253, 309
DdeI CTNAG 1 cut(s) 143
DpnI GATC 1 cut(s) 220
DpnII GATC 1 cut(s) 218
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 183
FaeI CATG 2 cut(s) 79, 130
FaiI YATR 6 cut(s) 77, 128, 158, 191, 204, 277
FatI CATG 2 cut(s) 75, 126
Fnu4HI GCNGC 3 cut(s) 102, 105, 290
Fsp4HI GCNGC 3 cut(s) 102, 105, 290
FspBI CTAG 2 cut(s) 35, 310
GluI GCNGC 3 cut(s) 102, 105, 290
HaeIII GGCC 2 cut(s) 152, 253
HapII CCGG 1 cut(s) 222
HgaI GACGC 1 cut(s) 255
Hin1I GRCGYC 1 cut(s) 266
Hin1II CATG 2 cut(s) 79, 130
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 222
Hpy188I TCNGA 1 cut(s) 163
HpyCH4V TGCA 3 cut(s) 107, 233, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 143
Hsp92I GRCGYC 1 cut(s) 266
Hsp92II CATG 2 cut(s) 79, 130
Kzo9I GATC 1 cut(s) 218
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 6 cut(s) 5, 103, 144, 235, 243, 306
Lsp1109I GCAGC 2 cut(s) 88, 91
MaeI CTAG 2 cut(s) 35, 310
MaeIII GTNAC 1 cut(s) 41
MalI GATC 1 cut(s) 220
MboI GATC 1 cut(s) 218
MboII GAAGA 3 cut(s) 50, 176, 238
MflI RGATCY 1 cut(s) 218
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 2 cut(s) 96, 272
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 2 cut(s) 75, 289
Mox20I TGGCCA 1 cut(s) 152
MscI TGGCCA 1 cut(s) 152
Msp20I TGGCCA 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 1 cut(s) 218
NlaIII CATG 2 cut(s) 79, 130
NlaIV GGNNCC 2 cut(s) 86, 220
NmuCI GTSAC 1 cut(s) 41
NspI RCATGY 1 cut(s) 130
PkrI GCNGC 3 cut(s) 103, 106, 291
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 86, 220
PspPI GGNCC 1 cut(s) 251
PstI CTGCAG 2 cut(s) 109, 241
PsuI RGATCY 1 cut(s) 218
SatI GCNGC 3 cut(s) 102, 105, 290
Sau3AI GATC 1 cut(s) 218
Sau96I GGNCC 1 cut(s) 251
SchI GAGTC 1 cut(s) 14
SetI ASST 6 cut(s) 43, 50, 86, 232, 300, 311
SfcI CTRYAG 2 cut(s) 105, 237
Sse9I AATT 2 cut(s) 96, 272
SsiI CCGC 3 cut(s) 17, 120, 290
SspMI CTAG 2 cut(s) 35, 310
TasI AATT 2 cut(s) 96, 272
TauI GCSGC 1 cut(s) 292
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 2 cut(s) 101, 104
Tsp45I GTSAC 1 cut(s) 41
TspRI CASTG 1 cut(s) 246
XceI RCATGY 1 cut(s) 130
XspI CTAG 2 cut(s) 35, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.