Rroxscaffold_4G00320500

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000171
Physical Location & Seq
Reverse (-)
49209424 .. 49210706
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00320500.1

Sequence Viewer

Length: 813 bp
ATGAAGGATTTGATTTCCTCCAAGCATGAAAGCAAGACCAGAGAAAATCCAGGCTTAGGAAAGATTGTGATGAAAATGGAAAATATGAGAGTGAAGCATTTTGCTTTGCCTTTTCTTGTGCTTCTTTGCTTGGCAAGAATCTGTAGCAATAGTCTTACAGCTGATCACTATCCAGACCAAATCCTCTTTGGGAAGAAGCATTTTGTGCTGGTTCATGGAGCCGGTCACGGAGCTTGGTGTTGGTATAAGTTGGCAACTCTATTGACCTCCACAGGTCACAATGTTACTACACTAGACCTTGCAGCATCTGGGATCAACCAGATCCAGGTAGAGCAAGTTCATTTGTTCTCCAATTACGTTGAGCCATTGATCAGTTTTCTGGGGTCTCTTACGCCAAAGGAGAGGGTTATCCTGGTTGGCCACAGCTTGGGTGGAGCCGTGATATCATTTGCCATGGAGAGGTTCCCTGAGAAAATTGCTGCTGCTCTCAAGGAAAGATGGGATGCTAAGCAAATGTCATCGTACCAGCTATCGCCACCAGAGGATCTAACACTAGCATTGTCATTGCTGAGACCTTCCCCAACTTTTAATGAAGATATAAAACTCACCGACGAGAAATACGGATTGGTTCCAAGAGTGTTCATCGTGTGCGACCAAGACCTTACAATAGAGGAGGAAATACAAATGTGGATGATCAGGGAGAACCCACCAAATGAAGTGAAAGTGATAAATGGTTCCGATCACATGGTCATGTTCTCTAGACCACAGGAGCTGTTCTCCAACCTCCTCAAGATTGCTGAGAAATATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

270

Amino Acids

30.49

Weight (kDa)

6.55

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 66 - 161 1.1e-08 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 67 - 161 7e-13 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 68 - 152 1.4e-11 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 427
AclWI GGATC 3 cut(s) 316, 320, 552
AcoI YGGCCR 1 cut(s) 418
AfaI GTAC 1 cut(s) 524
AfiI CCNNNNNNNGG 4 cut(s) 56, 325, 427, 459
AjnI CCWGG 3 cut(s) 49, 324, 411
AjuI GAANNNNNNNTTGG 2 cut(s) 608, 640
AluBI AGCT 5 cut(s) 161, 233, 426, 529, 772
AluI AGCT 5 cut(s) 161, 233, 426, 529, 772
Alw26I GTCTC 2 cut(s) 390, 565
AlwI GGATC 3 cut(s) 316, 320, 552
AlwNI CAGNNNCTG 2 cut(s) 308, 772
AoxI GGCC 1 cut(s) 418
ApeKI GCWGC 3 cut(s) 302, 479, 482
AsuHPI GGTGA 1 cut(s) 598
BalI TGGCCA 1 cut(s) 420
BbvI GCAGC 3 cut(s) 314, 466, 469
BccI CCATC 1 cut(s) 492
BceAI ACGGC 1 cut(s) 422
BciT130I CCWGG 3 cut(s) 51, 326, 413
BclI TGATCA 3 cut(s) 163, 369, 693
BcoDI GTCTC 2 cut(s) 390, 565
BfaI CTAG 3 cut(s) 293, 554, 759
BfmI CTRYAG 1 cut(s) 142
BisI GCNGC 3 cut(s) 303, 480, 483
BlpI GCTNAGC 1 cut(s) 507
BlsI GCNGC 3 cut(s) 304, 481, 484
Bme1390I CCNGG 3 cut(s) 51, 326, 413
BmiI GGNNCC 5 cut(s) 220, 436, 464, 630, 736
BmrFI CCNGG 3 cut(s) 51, 326, 413
BmsI GCATC 2 cut(s) 314, 493
BplI GAGNNNNNCTC 2 cut(s) 761, 793
Bpu10I CCTNAGC 1 cut(s) 55
Bpu1102I GCTNAGC 1 cut(s) 507
BpuEI CTTGAG 2 cut(s) 473, 773
BsaBI GATNNNNATC 1 cut(s) 168
BsaI GGTCTC 2 cut(s) 390, 565
BsaJI CCNNGG 1 cut(s) 453
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 325, 427, 459
Bse118I RCCGGY 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 563
Bse8I GATNNNNATC 1 cut(s) 168
BseBI CCWGG 3 cut(s) 51, 326, 413
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 2 cut(s) 508, 696
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 4 cut(s) 56, 325, 427, 459
BseMI GCAATG 1 cut(s) 563
BseMII CTCAG 3 cut(s) 459, 560, 789
BseRI GAGGAG 2 cut(s) 686, 776
BseXI GCAGC 3 cut(s) 314, 466, 469
BshFI GGCC 1 cut(s) 420
BsiSI CCGG 1 cut(s) 222
BslI CCNNNNNNNGG 4 cut(s) 56, 325, 427, 459
BsmAI GTCTC 2 cut(s) 390, 565
BsnI GGCC 1 cut(s) 420
Bso31I GGTCTC 2 cut(s) 390, 565
Bsp143I GATC 7 cut(s) 163, 312, 321, 369, 544, 693, 739
Bsp1720I GCTNAGC 1 cut(s) 507
Bsp19I CCATGG 1 cut(s) 453
BspANI GGCC 1 cut(s) 420
BspCNI CTCAG 3 cut(s) 460, 561, 790
BspLI GGNNCC 5 cut(s) 220, 436, 464, 630, 736
BspPI GGATC 3 cut(s) 316, 320, 552
BspTNI GGTCTC 2 cut(s) 390, 565
BsrDI GCAATG 1 cut(s) 563
BsrFI RCCGGY 1 cut(s) 221
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 7 cut(s) 163, 312, 321, 369, 544, 693, 739
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 3 cut(s) 51, 326, 413
BstAPI GCANNNNNTGC 1 cut(s) 205
BstDEI CTNAG 5 cut(s) 55, 468, 507, 569, 798
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 2 cut(s) 508, 696
BstKTI GATC 7 cut(s) 166, 315, 324, 372, 547, 696, 742
BstMAI GTCTC 2 cut(s) 390, 565
BstMBI GATC 7 cut(s) 163, 312, 321, 369, 544, 693, 739
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNI CCWGG 3 cut(s) 51, 326, 413
BstSCI CCNGG 3 cut(s) 49, 324, 411
BstSFI CTRYAG 1 cut(s) 142
BstV1I GCAGC 3 cut(s) 314, 466, 469
BstX2I RGATCY 2 cut(s) 321, 544
BstYI RGATCY 2 cut(s) 321, 544
BsuRI GGCC 1 cut(s) 420
BtgI CCRYGG 1 cut(s) 453
BtsCI GGATG 2 cut(s) 508, 696
CaiI CAGNNNCTG 2 cut(s) 308, 772
Cfr10I RCCGGY 1 cut(s) 221
Csp6I GTAC 1 cut(s) 523
CviAII CATG 5 cut(s) 26, 215, 454, 745, 751
CviQI GTAC 1 cut(s) 523
DdeI CTNAG 5 cut(s) 55, 468, 507, 569, 798
DpnI GATC 7 cut(s) 165, 314, 323, 371, 546, 695, 741
DpnII GATC 7 cut(s) 163, 312, 321, 369, 544, 693, 739
EaeI YGGCCR 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 453
Eco31I GGTCTC 2 cut(s) 390, 565
Eco32I GATATC 1 cut(s) 444
EcoRII CCWGG 3 cut(s) 49, 324, 411
EcoRV GATATC 1 cut(s) 444
EcoT14I CCWWGG 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 5 cut(s) 29, 218, 457, 748, 754
FaiI YATR 9 cut(s) 27, 86, 216, 246, 455, 599, 746, 752, 811
FatI CATG 5 cut(s) 25, 214, 453, 744, 750
FbaI TGATCA 3 cut(s) 163, 369, 693
Fnu4HI GCNGC 3 cut(s) 303, 480, 483
FokI GGATG 2 cut(s) 515, 703
Fsp4HI GCNGC 3 cut(s) 303, 480, 483
FspBI CTAG 3 cut(s) 293, 554, 759
GluI GCNGC 3 cut(s) 303, 480, 483
HaeIII GGCC 1 cut(s) 420
HapII CCGG 1 cut(s) 222
Hin1II CATG 5 cut(s) 29, 218, 457, 748, 754
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 222
HphI GGTGA 1 cut(s) 598
Hpy188I TCNGA 1 cut(s) 739
Hpy188III TCNNGA 3 cut(s) 173, 759, 790
Hpy99I CGWCG 1 cut(s) 614
HpyAV CCTTC 1 cut(s) 585
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 5 cut(s) 55, 468, 507, 569, 798
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 5 cut(s) 29, 218, 457, 748, 754
Ksp22I TGATCA 3 cut(s) 163, 369, 693
Kzo9I GATC 7 cut(s) 163, 312, 321, 369, 544, 693, 739
LmnI GCTCC 4 cut(s) 218, 230, 434, 769
Lsp1109I GCAGC 3 cut(s) 314, 466, 469
LweI GCATC 2 cut(s) 314, 493
MaeI CTAG 3 cut(s) 293, 554, 759
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 3 cut(s) 224, 275, 283
MalI GATC 7 cut(s) 165, 314, 323, 371, 546, 695, 741
MboI GATC 7 cut(s) 163, 312, 321, 369, 544, 693, 739
MboII GAAGA 2 cut(s) 205, 605
MflI RGATCY 2 cut(s) 321, 544
MlsI TGGCCA 1 cut(s) 420
MluCI AATT 2 cut(s) 352, 474
MluNI TGGCCA 1 cut(s) 420
MmeI TCCRAC 1 cut(s) 804
Mox20I TGGCCA 1 cut(s) 420
MscI TGGCCA 1 cut(s) 420
MseI TTAA 1 cut(s) 588
MslI CAYNNNNRTG 1 cut(s) 749
Msp20I TGGCCA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 3 cut(s) 51, 326, 413
MvaI CCWGG 3 cut(s) 51, 326, 413
MwoI GCNNNNNNNGC 1 cut(s) 205
NcoI CCATGG 1 cut(s) 453
NdeII GATC 7 cut(s) 163, 312, 321, 369, 544, 693, 739
NlaIII CATG 5 cut(s) 29, 218, 457, 748, 754
NlaIV GGNNCC 5 cut(s) 220, 436, 464, 630, 736
NmuCI GTSAC 2 cut(s) 224, 275
PfeI GAWTC 1 cut(s) 138
PflMI CCANNNNNTGG 1 cut(s) 427
PkrI GCNGC 3 cut(s) 304, 481, 484
Psp6I CCWGG 3 cut(s) 49, 324, 411
PspGI CCWGG 3 cut(s) 49, 324, 411
PspN4I GGNNCC 5 cut(s) 220, 436, 464, 630, 736
PsrI GAACNNNNNNTAC 2 cut(s) 321, 353
PstNI CAGNNNCTG 2 cut(s) 308, 772
PsuI RGATCY 2 cut(s) 321, 544
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
RseI CAYNNNNRTG 1 cut(s) 749
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 3 cut(s) 303, 480, 483
Sau3AI GATC 7 cut(s) 163, 312, 321, 369, 544, 693, 739
ScrFI CCNGG 3 cut(s) 51, 326, 413
SfaNI GCATC 2 cut(s) 314, 493
SfcI CTRYAG 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 749
SmlI CTYRAG 2 cut(s) 488, 788
SmoI CTYRAG 2 cut(s) 488, 788
Sse9I AATT 2 cut(s) 352, 474
SspI AATATT 1 cut(s) 806
SspMI CTAG 3 cut(s) 293, 554, 759
StyD4I CCNGG 3 cut(s) 49, 324, 411
StyI CCWWGG 1 cut(s) 453
TaiI ACGT 1 cut(s) 360
TasI AATT 2 cut(s) 352, 474
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TseFI GTSAC 2 cut(s) 224, 275
TseI GCWGC 3 cut(s) 302, 479, 482
Tsp45I GTSAC 2 cut(s) 224, 275
TspDTI ATGAA 9 cut(s) 17, 42, 86, 203, 329, 606, 631, 729, 798
TspGWI ACGGA 2 cut(s) 243, 636
Van91I CCANNNNNTGG 1 cut(s) 427
XbaI TCTAGA 1 cut(s) 758
XcmI CCANNNNNNNNNTGG 2 cut(s) 185, 428
XspI CTAG 3 cut(s) 293, 554, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.