Rroxscaffold_2G00139240

Methylketone synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000171
Physical Location & Seq
Reverse (-)
77617445 .. 77618609
1165 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00139240.1

Sequence Viewer

Length: 576 bp
ATGGCAGCATCCAGAATAAACCCGATGCAGGTACAAGAAATCCATTCGTTCTCGGATTATGCTGAGCCGTTGATCAAATTCATGGCGTCTCTACCACCACTACATAGGGTTATCCTAGTTGGCCACAGCATGGGTGGTGCCATCATATCTATTGCCACGGAGATCGATATTCCCTCAGAGGATTTCAGCTGCTGTATTCACCACCGCTGCCATGCCTGGCCCTGCTCTAAATTAGTCCACTATAGTTGCAACGGTAACGAGTTCTATCCAAGCGTCAACAGTGGTGCGAGTACTCTTATGGACTCTCAGTTTATATCTGATGATGGGCCAAACAACCCTCCAACCTCTTTACTATTTGGGCCTAACTTCATGTCCTCGTCGCTGTATCAGCTCTCACCAGTCACCACCAGACACCGTGGATATACCGAGCAAGTGGTAAGGTTGATGATCAGTCAAAATCCGCCGAATGAAGTGAAAGTGATCAATGGTTCAGATCACATAGTTATCGTCTCTAGACCAGTAGAGCTGTTCTCCCATCTCCAGAAGATTGCTGAGAAATACTATCAAGGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

191

Amino Acids

21.26

Weight (kDa)

6.34

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 137
AccB7I CCANNNNNTGG 1 cut(s) 130
AciI CCGC 2 cut(s) 205, 461
AcoI YGGCCR 1 cut(s) 121
AcsI RAATTY 1 cut(s) 77
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 2 cut(s) 33, 292
AfiI CCNNNNNNNGG 2 cut(s) 28, 130
AjnI CCWGG 1 cut(s) 215
AluBI AGCT 3 cut(s) 189, 391, 526
AluI AGCT 3 cut(s) 189, 391, 526
Alw26I GTCTC 2 cut(s) 93, 514
AlwNI CAGNNNCTG 1 cut(s) 192
AoxI GGCC 4 cut(s) 121, 218, 326, 359
ApeKI GCWGC 3 cut(s) 5, 189, 207
ApoI RAATTY 1 cut(s) 77
AspS9I GGNCC 3 cut(s) 219, 326, 359
AsuHPI GGTGA 3 cut(s) 191, 387, 394
BalI TGGCCA 1 cut(s) 123
BanI GGYRCC 1 cut(s) 137
BbvI GCAGC 3 cut(s) 17, 176, 194
BccI CCATC 3 cut(s) 149, 317, 543
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 217
BclI TGATCA 3 cut(s) 72, 447, 480
BcoDI GTCTC 2 cut(s) 93, 514
BfaI CTAG 2 cut(s) 116, 513
BfmI CTRYAG 1 cut(s) 241
BfuAI ACCTGC 1 cut(s) 19
BisI GCNGC 3 cut(s) 6, 190, 208
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 3 cut(s) 7, 191, 209
BmcAI AGTACT 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 217
BmgT120I GGNCC 3 cut(s) 219, 326, 359
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 217
BmsI GCATC 2 cut(s) 15, 17
BplI GAGNNNNNCTC 2 cut(s) 515, 547
BpmI CTGGAG 1 cut(s) 524
Bpu1102I GCTNAGC 1 cut(s) 63
Bsa29I ATCGAT 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 156, 415
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 130
Bse1I ACTGG 2 cut(s) 398, 518
BseBI CCWGG 1 cut(s) 217
BseCI ATCGAT 1 cut(s) 165
BseDI CCNNGG 2 cut(s) 156, 415
BseGI GGATG 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 28, 130
BseMII CTCAG 4 cut(s) 54, 189, 320, 543
BseNI ACTGG 2 cut(s) 398, 518
BseXI GCAGC 3 cut(s) 17, 176, 194
BshFI GGCC 4 cut(s) 123, 220, 328, 361
BshNI GGYRCC 1 cut(s) 137
BshVI ATCGAT 1 cut(s) 165
BslI CCNNNNNNNGG 2 cut(s) 28, 130
BsmAI GTCTC 2 cut(s) 93, 514
BsmBI CGTCTC 2 cut(s) 93, 514
BsnI GGCC 4 cut(s) 123, 220, 328, 361
Bsp143I GATC 5 cut(s) 72, 162, 447, 480, 493
Bsp1720I GCTNAGC 1 cut(s) 63
BspACI CCGC 2 cut(s) 205, 461
BspANI GGCC 4 cut(s) 123, 220, 328, 361
BspCNI CTCAG 4 cut(s) 55, 188, 319, 544
BspDI ATCGAT 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 137
BsrI ACTGG 2 cut(s) 398, 518
BssECI CCNNGG 2 cut(s) 156, 415
BssMI GATC 5 cut(s) 72, 162, 447, 480, 493
BssNI GRCGYC 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 217
Bst4CI ACNGT 3 cut(s) 254, 281, 416
BstACI GRCGYC 1 cut(s) 86
BstDEI CTNAG 4 cut(s) 63, 175, 306, 552
BstDSI CCRYGG 2 cut(s) 156, 415
BstF5I GGATG 1 cut(s) 8
BstKTI GATC 5 cut(s) 75, 165, 450, 483, 496
BstMAI GTCTC 2 cut(s) 93, 514
BstMBI GATC 5 cut(s) 72, 162, 447, 480, 493
BstMWI GCNNNNNNNGC 1 cut(s) 388
BstNI CCWGG 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 215
BstSFI CTRYAG 1 cut(s) 241
BstV1I GCAGC 3 cut(s) 17, 176, 194
Bsu15I ATCGAT 1 cut(s) 165
BsuRI GGCC 4 cut(s) 123, 220, 328, 361
BsuTUI ATCGAT 1 cut(s) 165
BtgI CCRYGG 2 cut(s) 156, 415
BtsCI GGATG 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 286
BveI ACCTGC 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 192
Cfr13I GGNCC 3 cut(s) 219, 326, 359
ClaI ATCGAT 1 cut(s) 165
CseI GACGC 2 cut(s) 75, 262
Csp6I GTAC 2 cut(s) 32, 291
CspCI CAANNNNNGTGG 2 cut(s) 227, 262
CviAII CATG 4 cut(s) 82, 130, 212, 370
CviJI RGCY 8 cut(s) 67, 123, 189, 220, 328, 361, 391, 526
CviKI_1 RGCY 8 cut(s) 67, 123, 189, 220, 328, 361, 391, 526
CviQI GTAC 2 cut(s) 32, 291
DdeI CTNAG 4 cut(s) 63, 175, 306, 552
DpnI GATC 5 cut(s) 74, 164, 449, 482, 495
DpnII GATC 5 cut(s) 72, 162, 447, 480, 493
EaeI YGGCCR 1 cut(s) 121
EciI GGCGGA 1 cut(s) 450
EcoRII CCWGG 1 cut(s) 215
Esp3I CGTCTC 2 cut(s) 93, 514
FaeI CATG 4 cut(s) 85, 133, 215, 373
FatI CATG 4 cut(s) 81, 129, 211, 369
FbaI TGATCA 3 cut(s) 72, 447, 480
Fnu4HI GCNGC 3 cut(s) 6, 190, 208
Fsp4HI GCNGC 3 cut(s) 6, 190, 208
FspBI CTAG 2 cut(s) 116, 513
GluI GCNGC 3 cut(s) 6, 190, 208
GsuI CTGGAG 1 cut(s) 524
HaeIII GGCC 4 cut(s) 123, 220, 328, 361
HgaI GACGC 2 cut(s) 75, 262
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 4 cut(s) 85, 133, 215, 373
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 1 cut(s) 302
HphI GGTGA 3 cut(s) 191, 387, 394
Hpy166II GTNNAC 2 cut(s) 238, 277
Hpy188I TCNGA 4 cut(s) 55, 178, 319, 493
Hpy188III TCNNGA 3 cut(s) 12, 513, 541
Hpy8I GTNNAC 2 cut(s) 238, 277
Hpy99I CGWCG 1 cut(s) 382
HpyCH4III ACNGT 3 cut(s) 254, 281, 416
HpyCH4V TGCA 2 cut(s) 28, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 388
HpyF3I CTNAG 4 cut(s) 63, 175, 306, 552
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 4 cut(s) 85, 133, 215, 373
Ksp22I TGATCA 3 cut(s) 72, 447, 480
Kzo9I GATC 5 cut(s) 72, 162, 447, 480, 493
LpnPI CCDG 9 cut(s) 14, 25, 202, 229, 235, 411, 421, 531, 554
Lsp1109I GCAGC 3 cut(s) 17, 176, 194
LweI GCATC 2 cut(s) 15, 17
MaeI CTAG 2 cut(s) 116, 513
MaeIII GTNAC 2 cut(s) 254, 400
MalI GATC 5 cut(s) 74, 164, 449, 482, 495
MboI GATC 5 cut(s) 72, 162, 447, 480, 493
MboII GAAGA 1 cut(s) 556
MlsI TGGCCA 1 cut(s) 123
MluCI AATT 2 cut(s) 77, 230
MluNI TGGCCA 1 cut(s) 123
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 365
MnlI CCTC 5 cut(s) 172, 184, 348, 355, 385
Mox20I TGGCCA 1 cut(s) 123
MscI TGGCCA 1 cut(s) 123
Msp20I TGGCCA 1 cut(s) 123
MspA1I CMGCKG 2 cut(s) 189, 207
MspR9I CCNGG 1 cut(s) 217
MvaI CCWGG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 388
NdeII GATC 5 cut(s) 72, 162, 447, 480, 493
NlaIII CATG 4 cut(s) 85, 133, 215, 373
NlaIV GGNNCC 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 400
PflMI CCANNNNNTGG 1 cut(s) 130
PkrI GCNGC 3 cut(s) 7, 191, 209
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 3 cut(s) 219, 326, 359
PstNI CAGNNNCTG 1 cut(s) 192
PvuII CAGCTG 1 cut(s) 189
RsaI GTAC 2 cut(s) 33, 292
RsaNI GTAC 2 cut(s) 32, 291
SatI GCNGC 3 cut(s) 6, 190, 208
Sau3AI GATC 5 cut(s) 72, 162, 447, 480, 493
Sau96I GGNCC 3 cut(s) 219, 326, 359
ScaI AGTACT 1 cut(s) 292
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 217
SetI ASST 6 cut(s) 33, 191, 347, 393, 443, 528
SfaNI GCATC 2 cut(s) 15, 17
SfcI CTRYAG 1 cut(s) 241
Sse9I AATT 2 cut(s) 77, 230
SsiI CCGC 2 cut(s) 205, 461
SspMI CTAG 2 cut(s) 116, 513
StyD4I CCNGG 1 cut(s) 215
TaaI ACNGT 3 cut(s) 254, 281, 416
TaqI TCGA 1 cut(s) 165
TasI AATT 2 cut(s) 77, 230
TatI WGTACW 1 cut(s) 290
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 3 cut(s) 5, 189, 207
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 3 cut(s) 70, 358, 483
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 286
Van91I CCANNNNNTGG 1 cut(s) 130
XapI RAATTY 1 cut(s) 77
XbaI TCTAGA 1 cut(s) 512
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XspI CTAG 2 cut(s) 116, 513
ZrmI AGTACT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.