Prupe.7G141000_v2.0.a1

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000171
Physical Location & Seq
Reverse (-)
15640561 .. 15642878
2318 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G141000.1

Sequence Viewer

Length: 885 bp
ATGTTAATGATAAGGAAAATAGAGCACATCAAAGACAAAGAGAAGAATTCTATTCTATTTTTTCTTTTATTGGTATTTTTCTTGGCTAGGGTCTGTTCTTCATCGCCATCCCCACCCAACCGGAGTGGGAAGAAGCATTTTGTGTTGATTCATGGAGCTGGTCACGGAGCATGGTCTTGGTATAAGGTGGCAACTTTGTTGAAACATTCAGGCCATAATGTCACAGCCCTAGACTTGGGAGCATCTGGGATAAACCCAATTCAGGTGGAACAACTCCATTCGATGTCGCAATATGTTGAGCCGTTGACGAAGCTCATGGTGTCTTTGCCACCAACGGAGAGGGTCATTCTTGTGGCTCACAGCATCACTGGGGCTGTTATATCTATTTTCATGGAGAGGTTCCCTGAGAAAATTGTTGCTGGGGTTTATGCCACGGCTTTCATGTCTGGTCTTGGTTTGAGTTATTCAACTATATTTGCAGAGATTAACAAAAGATTGGACTATATGGACACTCAATATAGATATGACAATGGACCCAAAAATCCTGCAACCTCCTTTCGCTTTGGGCCCAAGGTCATGGCGTCAAACTTTTATCAGCTCTCGCCACCAGAGGATTTAACACTAGGTTACTCGTTGGTAAGATTTTCTCCCGTTTTCGATTTTGATCAAATAAAGCTCACCAAAGAGAATTATGGATCGGTTCCTAGAGTATTCATTGTGGCCGAGCAAGACCATGCAATAGTGTTGGATGTGCAAAATTTTATGATCAAGAACAATCCGCCAGATGAAGTCAAAGTGATTAAGGGTTCTGATCACATGGTCATGCTCTCTAGACCAGTAGAGCTCTTCTCCGACCTCCAAGACATTGCTGAGAAATATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

295

Amino Acids

33.09

Weight (kDa)

8.46

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 779
AclWI GGATC 1 cut(s) 703
AcoI YGGCCR 1 cut(s) 720
AcsI RAATTY 2 cut(s) 46, 757
AcyI GRCGYC 1 cut(s) 581
AfiI CCNNNNNNNGG 2 cut(s) 235, 262
AgsI TTSAA 2 cut(s) 202, 468
AluBI AGCT 5 cut(s) 158, 313, 598, 676, 844
AluI AGCT 5 cut(s) 158, 313, 598, 676, 844
Alw21I GWGCWC 2 cut(s) 27, 846
AlwI GGATC 1 cut(s) 703
AoxI GGCC 3 cut(s) 211, 566, 720
ApaI GGGCCC 1 cut(s) 570
ApoI RAATTY 2 cut(s) 46, 757
AspS9I GGNCC 3 cut(s) 533, 566, 567
AsuHPI GGTGA 1 cut(s) 670
AvaII GGWCC 1 cut(s) 533
BaeGI GKGCMC 1 cut(s) 570
BanII GRGCYC 2 cut(s) 570, 846
Bbv12I GWGCWC 2 cut(s) 27, 846
BccI CCATC 1 cut(s) 115
BceAI ACGGC 2 cut(s) 286, 450
BclI TGATCA 3 cut(s) 664, 765, 811
BfaI CTAG 5 cut(s) 87, 230, 623, 705, 831
Bme18I GGWCC 1 cut(s) 533
BmgT120I GGNCC 3 cut(s) 533, 566, 567
BmiI GGNNCC 4 cut(s) 401, 535, 568, 702
BmrI ACTGGG 1 cut(s) 378
BmsI GCATC 2 cut(s) 251, 372
BmuI ACTGGG 1 cut(s) 378
BplI GAGNNNNNCTC 2 cut(s) 833, 865
BsaBI GATNNNNATC 1 cut(s) 663
BsaHI GRCGYC 1 cut(s) 581
BsaJI CCNNGG 2 cut(s) 432, 570
BsaWI WCCGGW 1 cut(s) 120
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 262
Bse1I ACTGG 2 cut(s) 373, 836
Bse3DI GCAATG 1 cut(s) 864
Bse8I GATNNNNATC 1 cut(s) 663
BseDI CCNNGG 2 cut(s) 432, 570
BseGI GGATG 2 cut(s) 107, 754
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 2 cut(s) 235, 262
BseMI GCAATG 1 cut(s) 864
BseMII CTCAG 2 cut(s) 396, 861
BseNI ACTGG 2 cut(s) 373, 836
BseSI GKGCMC 1 cut(s) 570
BseYI CCCAGC 1 cut(s) 419
BshFI GGCC 3 cut(s) 213, 568, 722
BsiHKAI GWGCWC 2 cut(s) 27, 846
BsiSI CCGG 1 cut(s) 121
BslI CCNNNNNNNGG 2 cut(s) 235, 262
BsnI GGCC 3 cut(s) 213, 568, 722
Bsp120I GGGCCC 1 cut(s) 566
Bsp1286I GDGCHC 3 cut(s) 27, 570, 846
Bsp143I GATC 4 cut(s) 664, 695, 765, 811
BspACI CCGC 1 cut(s) 779
BspANI GGCC 3 cut(s) 213, 568, 722
BspCNI CTCAG 2 cut(s) 397, 862
BspLI GGNNCC 4 cut(s) 401, 535, 568, 702
BspPI GGATC 1 cut(s) 703
BspQI GCTCTTC 1 cut(s) 851
BsrDI GCAATG 1 cut(s) 864
BsrI ACTGG 2 cut(s) 373, 836
BssECI CCNNGG 2 cut(s) 432, 570
BssMI GATC 4 cut(s) 664, 695, 765, 811
BssNI GRCGYC 1 cut(s) 581
BssT1I CCWWGG 1 cut(s) 570
Bst6I CTCTTC 1 cut(s) 851
BstACI GRCGYC 1 cut(s) 581
BstDEI CTNAG 2 cut(s) 405, 870
BstDSI CCRYGG 1 cut(s) 432
BstF5I GGATG 2 cut(s) 107, 754
BstKTI GATC 4 cut(s) 667, 698, 768, 814
BstMBI GATC 4 cut(s) 664, 695, 765, 811
BstSLI GKGCMC 1 cut(s) 570
BstXI CCANNNNNNTGG 1 cut(s) 577
BsuRI GGCC 3 cut(s) 213, 568, 722
BtgI CCRYGG 1 cut(s) 432
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 2 cut(s) 107, 754
BtsIMutI CAGTG 1 cut(s) 366
Cfr13I GGNCC 3 cut(s) 533, 566, 567
CseI GACGC 1 cut(s) 570
CspCI CAANNNNNGTGG 4 cut(s) 106, 141, 246, 281
CviAII CATG 9 cut(s) 152, 171, 316, 391, 442, 577, 734, 817, 823
DdeI CTNAG 2 cut(s) 405, 870
DpnI GATC 4 cut(s) 666, 697, 767, 813
DpnII GATC 4 cut(s) 664, 695, 765, 811
EaeI YGGCCR 1 cut(s) 720
Eam1104I CTCTTC 1 cut(s) 851
EarI CTCTTC 1 cut(s) 851
EciI GGCGGA 1 cut(s) 768
Ecl136II GAGCTC 1 cut(s) 844
Eco130I CCWWGG 1 cut(s) 570
Eco24I GRGCYC 2 cut(s) 570, 846
Eco47I GGWCC 1 cut(s) 533
Eco53kI GAGCTC 1 cut(s) 844
EcoICRI GAGCTC 1 cut(s) 844
EcoRI GAATTC 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 570
EcoT38I GRGCYC 2 cut(s) 570, 846
ErhI CCWWGG 1 cut(s) 570
FaeI CATG 9 cut(s) 155, 174, 319, 394, 445, 580, 737, 820, 826
FatI CATG 9 cut(s) 151, 170, 315, 390, 441, 576, 733, 816, 822
FbaI TGATCA 3 cut(s) 664, 765, 811
FokI GGATG 2 cut(s) 94, 761
FriOI GRGCYC 2 cut(s) 570, 846
FspBI CTAG 5 cut(s) 87, 230, 623, 705, 831
GsaI CCCAGC 1 cut(s) 423
HaeIII GGCC 3 cut(s) 213, 568, 722
HapII CCGG 1 cut(s) 121
HgaI GACGC 1 cut(s) 570
Hin1I GRCGYC 1 cut(s) 581
Hin1II CATG 9 cut(s) 155, 174, 319, 394, 445, 580, 737, 820, 826
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 1 cut(s) 148
HpaII CCGG 1 cut(s) 121
HphI GGTGA 1 cut(s) 670
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 2 cut(s) 811, 853
Hpy188III TCNNGA 3 cut(s) 769, 831, 882
Hpy8I GTNNAC 1 cut(s) 306
HpyCH4V TGCA 4 cut(s) 479, 548, 737, 754
HpyF3I CTNAG 2 cut(s) 405, 870
Hsp92I GRCGYC 1 cut(s) 581
Hsp92II CATG 9 cut(s) 155, 174, 319, 394, 445, 580, 737, 820, 826
Ksp22I TGATCA 3 cut(s) 664, 765, 811
Kzo9I GATC 4 cut(s) 664, 695, 765, 811
LguI GCTCTTC 1 cut(s) 851
LmnI GCTCC 3 cut(s) 155, 167, 239
LweI GCATC 2 cut(s) 251, 372
MaeI CTAG 5 cut(s) 87, 230, 623, 705, 831
MaeIII GTNAC 3 cut(s) 161, 220, 626
MalI GATC 4 cut(s) 666, 697, 767, 813
MboI GATC 4 cut(s) 664, 695, 765, 811
MboII GAAGA 4 cut(s) 55, 90, 142, 838
MhlI GDGCHC 3 cut(s) 27, 570, 846
MluCI AATT 5 cut(s) 46, 258, 411, 688, 757
MmeI TCCRAC 2 cut(s) 726, 876
MnlI CCTC 5 cut(s) 333, 390, 562, 604, 866
MseI TTAA 4 cut(s) 5, 486, 617, 801
MslI CAYNNNNRTG 2 cut(s) 350, 821
MspI CCGG 1 cut(s) 121
NdeII GATC 4 cut(s) 664, 695, 765, 811
NlaIII CATG 9 cut(s) 155, 174, 319, 394, 445, 580, 737, 820, 826
NlaIV GGNNCC 4 cut(s) 401, 535, 568, 702
NmeAIII GCCGAG 1 cut(s) 748
NmuCI GTSAC 2 cut(s) 161, 220
PciSI GCTCTTC 1 cut(s) 851
PfeI GAWTC 1 cut(s) 148
Psp124BI GAGCTC 1 cut(s) 846
PspFI CCCAGC 1 cut(s) 419
PspN4I GGNNCC 4 cut(s) 401, 535, 568, 702
PspOMI GGGCCC 1 cut(s) 566
PspPI GGNCC 3 cut(s) 533, 566, 567
RseI CAYNNNNRTG 2 cut(s) 350, 821
SacI GAGCTC 1 cut(s) 846
SapI GCTCTTC 1 cut(s) 851
SaqAI TTAA 4 cut(s) 5, 486, 617, 801
Sau3AI GATC 4 cut(s) 664, 695, 765, 811
Sau96I GGNCC 3 cut(s) 533, 566, 567
SduI GDGCHC 3 cut(s) 27, 570, 846
SfaNI GCATC 2 cut(s) 251, 372
SinI GGWCC 1 cut(s) 533
SmiMI CAYNNNNRTG 2 cut(s) 350, 821
Sse9I AATT 5 cut(s) 46, 258, 411, 688, 757
SsiI CCGC 1 cut(s) 779
SspI AATATT 1 cut(s) 878
SspMI CTAG 5 cut(s) 87, 230, 623, 705, 831
SstI GAGCTC 1 cut(s) 846
StyI CCWWGG 1 cut(s) 570
TaqI TCGA 2 cut(s) 281, 657
TasI AATT 5 cut(s) 46, 258, 411, 688, 757
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 4 cut(s) 5, 486, 617, 801
Tru9I TTAA 4 cut(s) 5, 486, 617, 801
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 2 cut(s) 161, 220
Tsp45I GTSAC 2 cut(s) 161, 220
TspDTI ATGAA 6 cut(s) 90, 140, 379, 430, 703, 801
TspGWI ACGGA 2 cut(s) 180, 350
TspRI CASTG 1 cut(s) 373
VpaK11BI GGWCC 1 cut(s) 533
XapI RAATTY 2 cut(s) 46, 757
XbaI TCTAGA 1 cut(s) 830
XspI CTAG 5 cut(s) 87, 230, 623, 705, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.