Rw1G008100

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000171
Physical Location & Seq
Forward (+)
17425058 .. 17426299
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008100.1

Sequence Viewer

Length: 807 bp
ATGAAGGATTTGATTTCCTCCAAGCATGAAAGCAAGACCAGAGAAAATGCAGGCTTAGGAAAGATTGTGATGAAAACGGAAAATATGAGAGTGAAGCATTTTGCTTTGCCTTTTCTTGTGCTTCTTTGCTTGGCAAGAATCTACCAAATCCTCTTTGGGAAGAAGCATTTTGTGCTGGTTCATGGAGCCGGTCACGGAGCTTGGTGTTGGTATAAGTTGGCAACTCTATTGACCTCCACAGGTCACAATGTTACAACACTAGACCTTGCAGCATCTGGGATCAACGAGATCCAGGTAGAGCAAGTTCATTTGTTCTCCGAGTACGTTGAGCCATTGATCAGTTTTCTGGGGTCTCTTAAGCCAAAGGAGAGGGTTATCCTGGTTGGCCACAGCTTGGGTGGAGCCAAAATTGCTGCTGCTGTATATGCTACTGCTGTGATGCCAGGTCCTTCTCTTAGTTACTTGGCTATACATGATACGCTCAAGGAAAGATGGGATGCTAAGCAAATATCATCGTACCAGCTATCGCCACCAGAGGATCTAACACTAGCATTGTCATTGCTGAGACCTTCCCCAACATTTAATGAAGATATAAAACTCACCGACGAGAAATACGGATTGGTTCCAAGAGTGTTCATCGTGTGCGACCAAGACCTTACAATAGAGGAGGAAATACAAATGTGGATGATCAGGGAGAACCCAACAAATGAAGTGAAAGTGATAAATGGTTCCGATCACATGGTCATGTTCTCTAGATCACTGGAGCTGTTCTCCAACCTCCTCAACATTGCTGAGAAATATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

268

Amino Acids

30.07

Weight (kDa)

6.55

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 55 - 141 6.2e-08 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 56 - 140 9.1e-10 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 57 - 253 9.9e-19 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 394
AclWI GGATC 3 cut(s) 283, 287, 546
AcoI YGGCCR 1 cut(s) 385
AfaI GTAC 2 cut(s) 323, 518
AfiI CCNNNNNNNGG 1 cut(s) 394
AflII CTTAAG 1 cut(s) 356
AjnI CCWGG 3 cut(s) 291, 378, 442
AjuI GAANNNNNNNTTGG 2 cut(s) 602, 634
AluBI AGCT 4 cut(s) 200, 393, 523, 766
AluI AGCT 4 cut(s) 200, 393, 523, 766
Alw26I GTCTC 2 cut(s) 357, 559
AlwI GGATC 3 cut(s) 283, 287, 546
AlwNI CAGNNNCTG 1 cut(s) 275
AoxI GGCC 1 cut(s) 385
ApeKI GCWGC 3 cut(s) 269, 413, 416
AspS9I GGNCC 1 cut(s) 446
AsuHPI GGTGA 1 cut(s) 592
AvaII GGWCC 1 cut(s) 446
BalI TGGCCA 1 cut(s) 387
BbvI GCAGC 3 cut(s) 281, 400, 403
BccI CCATC 1 cut(s) 486
BciT130I CCWGG 3 cut(s) 293, 380, 444
BclI TGATCA 2 cut(s) 336, 687
BcoDI GTCTC 2 cut(s) 357, 559
BfaI CTAG 3 cut(s) 260, 548, 753
BfrI CTTAAG 1 cut(s) 356
BisI GCNGC 3 cut(s) 270, 414, 417
BlpI GCTNAGC 1 cut(s) 501
BlsI GCNGC 3 cut(s) 271, 415, 418
Bme1390I CCNGG 3 cut(s) 293, 380, 444
Bme18I GGWCC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 4 cut(s) 187, 403, 624, 730
BmrFI CCNGG 3 cut(s) 293, 380, 444
BmsI GCATC 3 cut(s) 281, 429, 487
BplI GAGNNNNNCTC 2 cut(s) 755, 787
BpmI CTGGAG 1 cut(s) 782
Bpu10I CCTNAGC 1 cut(s) 55
Bpu1102I GCTNAGC 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 467
BsaI GGTCTC 2 cut(s) 357, 559
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 765
Bse3DI GCAATG 2 cut(s) 557, 786
BseBI CCWGG 3 cut(s) 293, 380, 444
BseGI GGATG 2 cut(s) 502, 690
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMI GCAATG 2 cut(s) 557, 786
BseMII CTCAG 2 cut(s) 554, 783
BseNI ACTGG 1 cut(s) 765
BseRI GAGGAG 2 cut(s) 680, 770
BseXI GCAGC 3 cut(s) 281, 400, 403
BshFI GGCC 1 cut(s) 387
BsiSI CCGG 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 394
BsmAI GTCTC 2 cut(s) 357, 559
BsnI GGCC 1 cut(s) 387
Bso31I GGTCTC 2 cut(s) 357, 559
Bsp143I GATC 7 cut(s) 279, 288, 336, 538, 687, 733, 755
Bsp1720I GCTNAGC 1 cut(s) 501
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 2 cut(s) 555, 784
BspLI GGNNCC 4 cut(s) 187, 403, 624, 730
BspPI GGATC 3 cut(s) 283, 287, 546
BspTI CTTAAG 1 cut(s) 356
BspTNI GGTCTC 2 cut(s) 357, 559
BsrDI GCAATG 2 cut(s) 557, 786
BsrFI RCCGGY 1 cut(s) 188
BsrI ACTGG 1 cut(s) 765
BssAI RCCGGY 1 cut(s) 188
BssMI GATC 7 cut(s) 279, 288, 336, 538, 687, 733, 755
Bst2UI CCWGG 3 cut(s) 293, 380, 444
BstAFI CTTAAG 1 cut(s) 356
BstAPI GCANNNNNTGC 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 5 cut(s) 55, 455, 501, 563, 792
BstF5I GGATG 2 cut(s) 502, 690
BstKTI GATC 7 cut(s) 282, 291, 339, 541, 690, 736, 758
BstMAI GTCTC 2 cut(s) 357, 559
BstMBI GATC 7 cut(s) 279, 288, 336, 538, 687, 733, 755
BstMWI GCNNNNNNNGC 3 cut(s) 172, 410, 425
BstNI CCWGG 3 cut(s) 293, 380, 444
BstSCI CCNGG 3 cut(s) 291, 378, 442
BstV1I GCAGC 3 cut(s) 281, 400, 403
BstX2I RGATCY 2 cut(s) 288, 538
BstYI RGATCY 2 cut(s) 288, 538
BsuRI GGCC 1 cut(s) 387
BtsCI GGATG 2 cut(s) 502, 690
BtsIMutI CAGTG 1 cut(s) 758
Cac8I GCNNGC 1 cut(s) 52
CaiI CAGNNNCTG 1 cut(s) 275
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 446
Csp6I GTAC 2 cut(s) 322, 517
CviAII CATG 5 cut(s) 26, 182, 473, 739, 745
CviQI GTAC 2 cut(s) 322, 517
DdeI CTNAG 5 cut(s) 55, 455, 501, 563, 792
DpnI GATC 7 cut(s) 281, 290, 338, 540, 689, 735, 757
DpnII GATC 7 cut(s) 279, 288, 336, 538, 687, 733, 755
EaeI YGGCCR 1 cut(s) 385
Eco31I GGTCTC 2 cut(s) 357, 559
Eco47I GGWCC 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 446
EcoRII CCWGG 3 cut(s) 291, 378, 442
FaeI CATG 5 cut(s) 29, 185, 476, 742, 748
FatI CATG 5 cut(s) 25, 181, 472, 738, 744
FbaI TGATCA 2 cut(s) 336, 687
Fnu4HI GCNGC 3 cut(s) 270, 414, 417
FokI GGATG 2 cut(s) 509, 697
Fsp4HI GCNGC 3 cut(s) 270, 414, 417
FspBI CTAG 3 cut(s) 260, 548, 753
GluI GCNGC 3 cut(s) 270, 414, 417
GsuI CTGGAG 1 cut(s) 782
HaeIII GGCC 1 cut(s) 387
HapII CCGG 1 cut(s) 189
Hin1II CATG 5 cut(s) 29, 185, 476, 742, 748
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 592
Hpy188I TCNGA 2 cut(s) 319, 733
Hpy188III TCNNGA 1 cut(s) 753
Hpy99I CGWCG 1 cut(s) 608
HpyAV CCTTC 2 cut(s) 459, 579
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 2 cut(s) 50, 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 172, 410, 425
HpyF3I CTNAG 5 cut(s) 55, 455, 501, 563, 792
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 5 cut(s) 29, 185, 476, 742, 748
Ksp22I TGATCA 2 cut(s) 336, 687
Kzo9I GATC 7 cut(s) 279, 288, 336, 538, 687, 733, 755
LmnI GCTCC 4 cut(s) 185, 197, 401, 763
Lsp1109I GCAGC 3 cut(s) 281, 400, 403
LweI GCATC 3 cut(s) 281, 429, 487
MaeI CTAG 3 cut(s) 260, 548, 753
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 4 cut(s) 191, 242, 250, 458
MalI GATC 7 cut(s) 281, 290, 338, 540, 689, 735, 757
MboI GATC 7 cut(s) 279, 288, 336, 538, 687, 733, 755
MboII GAAGA 2 cut(s) 172, 599
MflI RGATCY 2 cut(s) 288, 538
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 1 cut(s) 408
MluNI TGGCCA 1 cut(s) 387
MmeI TCCRAC 1 cut(s) 798
MnlI CCTC 9 cut(s) 28, 161, 244, 363, 529, 658, 661, 788, 791
Mox20I TGGCCA 1 cut(s) 387
MscI TGGCCA 1 cut(s) 387
MseI TTAA 2 cut(s) 357, 582
MslI CAYNNNNRTG 1 cut(s) 743
Msp20I TGGCCA 1 cut(s) 387
MspCI CTTAAG 1 cut(s) 356
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 3 cut(s) 293, 380, 444
MvaI CCWGG 3 cut(s) 293, 380, 444
MwoI GCNNNNNNNGC 3 cut(s) 172, 410, 425
NdeII GATC 7 cut(s) 279, 288, 336, 538, 687, 733, 755
NlaIII CATG 5 cut(s) 29, 185, 476, 742, 748
NlaIV GGNNCC 4 cut(s) 187, 403, 624, 730
NmuCI GTSAC 2 cut(s) 191, 242
PfeI GAWTC 1 cut(s) 138
PflMI CCANNNNNTGG 1 cut(s) 394
PkrI GCNGC 3 cut(s) 271, 415, 418
PpuMI RGGWCCY 1 cut(s) 446
Psp5II RGGWCCY 1 cut(s) 446
Psp6I CCWGG 3 cut(s) 291, 378, 442
PspGI CCWGG 3 cut(s) 291, 378, 442
PspN4I GGNNCC 4 cut(s) 187, 403, 624, 730
PspPI GGNCC 1 cut(s) 446
PspPPI RGGWCCY 1 cut(s) 446
PsrI GAACNNNNNNTAC 2 cut(s) 288, 320
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 2 cut(s) 288, 538
RsaI GTAC 2 cut(s) 323, 518
RsaNI GTAC 2 cut(s) 322, 517
RseI CAYNNNNRTG 1 cut(s) 743
SaqAI TTAA 2 cut(s) 357, 582
SatI GCNGC 3 cut(s) 270, 414, 417
Sau3AI GATC 7 cut(s) 279, 288, 336, 538, 687, 733, 755
Sau96I GGNCC 1 cut(s) 446
ScrFI CCNGG 3 cut(s) 293, 380, 444
SfaNI GCATC 3 cut(s) 281, 429, 487
SinI GGWCC 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 743
SmlI CTYRAG 2 cut(s) 356, 482
SmoI CTYRAG 2 cut(s) 356, 482
Sse9I AATT 1 cut(s) 408
SspI AATATT 1 cut(s) 800
SspMI CTAG 3 cut(s) 260, 548, 753
StyD4I CCNGG 3 cut(s) 291, 378, 442
TaiI ACGT 1 cut(s) 327
TasI AATT 1 cut(s) 408
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 2 cut(s) 357, 582
Tru9I TTAA 2 cut(s) 357, 582
TscAI CASTG 1 cut(s) 765
TseFI GTSAC 2 cut(s) 191, 242
TseI GCWGC 3 cut(s) 269, 413, 416
Tsp45I GTSAC 2 cut(s) 191, 242
TspDTI ATGAA 9 cut(s) 17, 42, 86, 170, 296, 600, 625, 723, 792
TspGWI ACGGA 3 cut(s) 92, 210, 630
TspRI CASTG 1 cut(s) 765
Van91I CCANNNNNTGG 1 cut(s) 394
Vha464I CTTAAG 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 446
XbaI TCTAGA 1 cut(s) 752
XcmI CCANNNNNNNNNTGG 2 cut(s) 152, 395
XspI CTAG 3 cut(s) 260, 548, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.